Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F50 I2 R1 150 68.2 2132745 98.7% 2105019 150.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,142,200 C→T R723H (CGT→CAT)  rne ← endoribonuclease; RNA‑binding protein;RNA degradosome binding protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,142,2000CT100.0% 297.5 / NA 78R723H (CGT→CAT) rneendoribonuclease; RNA‑binding protein;RNA degradosome binding protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (34/44);  total (34/44)

CAGCGGGACTTTCACCAGTTCTGTGCGTGGAGCTGGCGCTTCCTGAACAATTGGTTCGGCAGCGACAGTTTCTTCAACCACCGGTGCGACTACCGCTTCTTCGGCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGACGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTGTTCGGTTTCCTGAACAGATTGCTCTTCAACATTCAGCGCCTTCGCTTCTTGTTGCGCCTGACGTTTATCATCATTACGGCGGCGGCTACGTTCACGACGCG  >  NC_000913/1142058‑1142344
                                                                                                                                              |                                                                                                                                                
cAGCGGGACTTTCACCAGTTCTGTGCGTGGAGCTGGCGCTTCCTGAACAATTGGTTCGGCAGCGACAGTTTCTTCAACCACCGGTGCGACTACCGCTTCTTCGGCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGttt                                                                                                                                           >  1:186936/1‑150 (MQ=255)
     ggACTTTCACCAGTTCTGTGCGTGGAGCTGGCGCTTCCTGAACAATTGGTTCGGCAGCGACAGTTTCTTCAACCACCGGTGCGACTACCGCTTCTTCGGCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTacgac                                                                                                                                      >  2:686871/1‑150 (MQ=255)
      gACTTTCACCAGTTCTGTGCGTGGAGCTGGCGCTTCCTGAACAATTGGTTCGGCAGCGACAGTTTCTTCAACCACCGGTGCGACTACCGCTTCTTCGGCTACGCTTGGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGAcgc                                                                                                                                    <  2:114946/151‑1 (MQ=255)
          ttCACCAGTTCTGTGCGTGGAGCTGGCGCTTCCTGAACAATTGGTTCGGCAGCGACAGTTTCTTCAACCACCGGTGCGACTACCGCTTCTTCGGCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGc                                                                                                                                 <  2:126623/150‑1 (MQ=255)
            cACCAGTTCTGTGCGTGGAGCTGGCGCTTCCTGAACAATTGGTTCGGCAGCGACAGTTTCTTCAACCACCGGTGCGACTACCGCTTCTTCGGCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTg                                                                                                                               <  1:731958/150‑1 (MQ=255)
               cAGTTCTGTGCGTGGAGCTGGCGCTTCCTAAACAATTGGTTCGGCAGCGACATTTTCTTCAACCACCGGTGCGACTCCGGCTTCTTCGGCTACGCTTTGCTCGTAACGCACTTTCTGATTGGGCGGATGCTGTTTACGCCGCGGCTGAAcc                                                                                                                           <  2:828409/151‑1 (MQ=255)
                   tCTGTGCGTGGAGCTGGCGCTTCCTGAACAATTGGTTCGGCAGCGACAGTTTCTTCAACCACCGGTGCGACTACCGCTTCTTCGGCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGa                                                                                                                        <  2:628769/150‑1 (MQ=255)
                      gtgCGTGGAGCTGGCGCTTCCTGAACAATTGGTTCGGCAGCGACAGTTTCTTCAACCACCGGTGCGACTACCGCTTCTTCGGCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGAc                                                                                                                       <  1:559238/148‑1 (MQ=255)
                      gtgCGTGGAGCTGGCGCTTCCTGAACAATTGGTTCGGCAGCGACAGTTTCTTCAACCACCGGTGCGACTACCGCTTCTTCGGCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACg                                                                                                                      <  2:869433/149‑1 (MQ=255)
                      gtgCGTGGAGCTGGCGCTTCCTGAACAATTGGTTCGGCAGCGACAGTTTCTTCAACCACCGGTGCGACTACCGCTTCTTCGGCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACg                                                                                                                      <  2:284857/149‑1 (MQ=255)
                         cGTGGAGCTGGCGCTTCCTGAACAATTGGTTCGGCAGCGACAGTTTCTTCAACCACCGGTGCGACTACCGCTTCTTCGGCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTacac                                                                                                                 >  2:283412/1‑151 (MQ=255)
                          gTGGAGCTGGCGCTTCCTGAACAATTGGTTCGGCAGCGACAGTTTCTTCAACCACCGGTGCGACTACCGCTTCTTCGGCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACg                                                                                                                <  2:588437/151‑1 (MQ=255)
                            ggAGCTGGCGCTTCCTGAACAATTGGTTCGGCAGCGACAGTTTCTTCAACCACCGGTGCGACTACCGCTTCTTCGGCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGtt                                                                                                              >  2:1054725/1‑151 (MQ=255)
                             gAGCTGGCGCTTCCTGAACAATTGGTTCGGCAGCGACAGTTTCTTCAACCACCGGTGCGACTACCGCTTCTTCGGCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGttc                                                                                                             >  2:989161/1‑151 (MQ=255)
                             gAGCTGGCGCTTCCTGAACAATTGGTTCGGCAGCGACAGTTTCTTCAACCACCGGTGCGACTACCGCTTCTTCGGCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGttc                                                                                                             >  2:161550/1‑151 (MQ=255)
                               gCTGGCGCTTCCTGAACAATTGGTTCGGCAGCGACAGTTTCTTCAACCACCGGTGCGACTACCGCTTCTTCGGCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGttctt                                                                                                           <  2:173496/151‑1 (MQ=255)
                                cTGGCGCTTCCTGAACAATTGGTTCGGCAGCGACAGTTTCTTCAACCACCGGTGCGACTACCGCTTCTTCGGCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGttcttc                                                                                                          >  1:334544/1‑151 (MQ=255)
                                 tGGCGCTTCCTGAACAATTGGTTCGGCAGCGACAGTTTCTTCAACCACCGGTGCGACTACCGCTTCTTCGGCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTcc                                                                                                         >  2:372784/1‑151 (MQ=255)
                                  ggCGCTTCCTGAACAATTGGTTCGGCAGCGACAGTTTCTTCAACCACCGGTGCGACTACCGCTTCTTCGGCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCt                                                                                                        <  2:893411/151‑1 (MQ=255)
                                    cgcTTCCTGAACAATTGGTTCGGCAGCGACAGTTTCTTCAACCACCGGTGCGACTACCGCTTCTTCGGCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTGt                                                                                                      <  2:514721/151‑1 (MQ=255)
                                     gcTTCCTGAACAATTGGTTCGGCAGCGACAGTTTCTTCAACCACCGGTGCGACTACCGCTTCTTCGGCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTGtt                                                                                                     <  1:262117/151‑1 (MQ=255)
                                       ttCCTGAACAATTGGTTCGGCAGCGACAGTTTCTTCAACCACCGGTGCGACTACCGCTTCTTCGGCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTGTTCg                                                                                                   >  1:539440/1‑151 (MQ=255)
                                       ttCCTGAACAATTGGTTCGGCAGCGACAGTTTCTTCAACCACCGGTGCGACTACCGCTTCTTCGGCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTGTTCg                                                                                                   >  1:914091/1‑151 (MQ=255)
                                        tCCTGAACAATTGGTTCGGCAGCGACAGTTTCTTCAACCACCGGTGCGACTACCGCTTCTTCGGCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTGTTc                                                                                                    <  2:1060747/149‑1 (MQ=255)
                                          cTGAACAATTGGTTCGGCAGCGACAGTTTCTTCAACCACCGGTGCGACTACCGCTTCTTCGGCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTGTTCGGtt                                                                                                >  1:655038/1‑151 (MQ=255)
                                           tGAACAATTGGTTCGGCAGCGACAGTTTCTTCAACCACCGGTGCGACTACCGCTTCTTCGGCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTGTTCGGttt                                                                                               >  2:479866/1‑151 (MQ=255)
                                            gAACAATTGGTTCGGCAGCGACAGTTTCTTCAACCACCGGTGCGACTACCGCTTCTTCGGCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTGTTCGGtt                                                                                                <  2:67868/149‑1 (MQ=255)
                                             aaCAATTGGTTCGGCAGCGACAGTTTCTTCAACCACCGGTGCGACTACCGCTTCTTCGGCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTGTTCGGTTTcc                                                                                             <  2:143615/151‑1 (MQ=255)
                                              aCAATTGGTTCGGCAGCGACAGTTTCTTCAACCACCGGTGCGACTACCGCTTCTTCGGCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTGTTCGGTTTCCt                                                                                            <  1:69686/151‑1 (MQ=255)
                                               cAATTGGTTCGGCAGCGACAGTTTCTTCAACCACCGGTGCGACTACCGCTTCTTCGGCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTGTTCGGTTTCCTg                                                                                           >  2:185187/1‑151 (MQ=255)
                                                aaTTGGTTCGGCAGCGACAGTTTCTTCAACCACCGGTGCGACTACCGCTTCTTCGGCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTGTTCGGTTTCCTg                                                                                           >  2:1034630/1‑150 (MQ=255)
                                                aaTTGGTTCGGCAGCGACAGTTTCTTCAACCACCGGTGCGACTACCGCTTCTTCGGCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTGTTCGGTTTCCTGa                                                                                          <  1:82395/151‑1 (MQ=255)
                                                   tGGTTCGGCAGCGACAGTTTCTTCAACCACCGGTGCGACTACCGCTTCTTCGGCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTGTTCGGTTTCCTGAAc                                                                                        >  2:461647/1‑150 (MQ=255)
                                                   tGGTTCGGCAGCGACAGTTTCTTCAACCACCGGTGCGACTACCGCTTCTTCGGCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTGTTCGGTTTCCTGAAc                                                                                        >  2:924612/1‑150 (MQ=255)
                                                    ggTTCGGCAGCGACAGTTTCTTCAACCACCGGTGCGACTACCGCTTCTTCGGCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTGTTCGGTTTCCTGAACAg                                                                                      <  2:978344/151‑1 (MQ=255)
                                                     gTTCGGCAGCGACAGTTTCTTCAACCACCGGTGCGACTACCGCTTCTTCGGCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTGTTCGGTTTCCTGAAc                                                                                        >  1:397317/1‑148 (MQ=255)
                                                     gTTCGGCAGCGACAGTTTCTTCAACCACCGGTGCGACTACCGCTTCTTCGGCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTGTTCGGTTTCCTGAACAGa                                                                                     <  1:243621/151‑1 (MQ=255)
                                                       tCGGCAGCGACAGTTTCTTCAACCACCGGTGCGACTACCGCTTCTTCGGCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTGTTCGGTTTCCTGAACAGAt                                                                                    <  1:869515/150‑1 (MQ=255)
                                                        cGGCAGCGACAGTTTCTTCAACCACCGGTGCGACTACCGCTTCTTCGGCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTGTTCGGTTTCCTGAACAGAtt                                                                                   >  2:79316/1‑150 (MQ=255)
                                                          gCAGCGACAGTTTCTTCAACCACCGGTGCGACTACCGCTTCTTCGGCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTGTTCGGTTTCCTGAACAGATTGct                                                                                <  1:479260/151‑1 (MQ=255)
                                                          gCAGCGACAGTTTCTTCAACCACCGGTGCGACTACCGCTTCTTCGGCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTGTTCGGTTTCCTGAACAGATTGct                                                                                <  2:925086/151‑1 (MQ=255)
                                                                  aGTTTCTTCAACCACCGGTGCGACTACCGCTTCTTCGGCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTGTTCGGTTTCCTGAACAGATTGCTCTTCAAc                                                                         >  1:359352/1‑150 (MQ=255)
                                                                    tttCTTCAACCACCGGTGCGACTACCGCTTCTTCGGCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTGTTCGGTTTCCTGAACAGATTGCTCTTCAACAtt                                                                      >  2:518166/1‑151 (MQ=255)
                                                                     ttcttcAACCACCGGTGCGACTACCGCTTCTTCGGCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTTTTCGGTTTCCTGAACAGATTGCTCTTCAACagt                                                                      <  1:224104/150‑3 (MQ=255)
                                                                       cttcAACCACCGGTGCGACTACCGCTTCTTCGGCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTGTTCGGTTTCCTGAACAGATTGCTCTTCAACATTc                                                                     >  1:352571/1‑149 (MQ=255)
                                                                         tcAACCACCGTTGCGACTACCGCTTCTTCGGCTACGCTTTGCTCGTAACGCCCTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTGTCCGTTTTCCTGAACAGATTGCTCTTCAACAt                                                                       <  2:944535/145‑1 (MQ=255)
                                                                           aaCCACCGGTGCGACTACCGCTTCTTCGGCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTGTTCGGTTTCCTGAACAGATTGCTCTTCAACATTCAGCGcc                                                               >  2:259395/1‑151 (MQ=255)
                                                                                ccGGTGCGACTACCGCTTCTTCGGCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTGTTCGGTTTCCTGAACAGATTGCTCTTCAACATTCAGCGCCTTCGc                                                          <  2:595454/151‑1 (MQ=255)
                                                                                     gCGACTACCGCTTCTTCGGCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTGTTCGGTTTCCTGAACAGATTGCTCTTCAACATTCAGCGCCTTCGcttctt                                                     <  1:331725/151‑1 (MQ=255)
                                                                                     gCGACTACCGCTTCTTCGGCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTGTTCGGTTTCCTGAACAGATTGCTCTTCAACATTCAGCGCCTTCGcttct                                                      <  2:263960/150‑1 (MQ=255)
                                                                                      cGACTACCGCTTCTTCGGCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTGTTCGGTTTCCTGAACAGATTGCTCTTCAACATTCAGCGCCTTCGCTTCttg                                                    <  1:461658/151‑1 (MQ=255)
                                                                                       gACTACCGCTTCTTCGGCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTGTTCGGTTTCCTGAACAGATTGCTCTTCAACATTCAGCGCCTTCGCTTCttgt                                                   <  1:989666/151‑1 (MQ=255)
                                                                                          tACCGCTTCTTCGGCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTGTTCGGTTTCCTGAACAGATTGCTCTTCAACATTCAGCGCCTTCGCTTCTTGTTgc                                                >  1:78564/1‑151 (MQ=255)
                                                                                           aCCGCTTCTTCGGCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTGTTCGGTTTCCTGAACAGATTGCTCTTCAACATTCAGCGCCTTCGCTTCTTGTTgc                                                <  2:29379/150‑1 (MQ=255)
                                                                                           aCCGCTTCTTCGGCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTGTTCGGTTTCCTGAACAGATTGCTCTTCAACATTCAGCGCCTTCGCTTCTTGTTgc                                                <  1:664991/150‑1 (MQ=255)
                                                                                           aCCGCTTCTTCGGCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTGTTCGGTTTCCTGAACAGATTGCTCTTCAACATTCAGCGCCTTCGCTGCttgttg                                                 <  1:531438/149‑1 (MQ=255)
                                                                                                 tcttcGGCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTGTTCGGTTTCCTGAACAGATTGCTCTTCAACATTCAGCGCCTTCGCTTCTTGTTGCGCCTGAc                                         >  1:930523/1‑151 (MQ=255)
                                                                                                 tcttcGGCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTGTTCGGTTTCCTGAACAGATTGCTCTTCAACATTCAGCGCCTTCGCTTCTTGTTGCGCCTGAc                                         >  2:638885/1‑151 (MQ=255)
                                                                                                    tcGGCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTGTTCGGTTTCCTGAACAGATTGCTCTTCAACATTCAGCGCCTTCGCTTCTTGTTGCGCCTGAc                                         <  2:1018157/148‑1 (MQ=255)
                                                                                                     cGGCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTGTTCGGTTTCCTGAACAGATTGCTCTTCAACATTCAGCGCCTTCGCTTCTTGTTGCGCCTGACGttt                                     <  1:293175/151‑1 (MQ=255)
                                                                                                      ggCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTGTTCGGTTTCCTGAACAGATTGCTCTTCAACATTCAGCGCCTTCGCTTCTTGTTGCGCCTGACGTTTa                                    <  2:545831/151‑1 (MQ=255)
                                                                                                       gCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTGTTCGGTTTCCTGAACAGATTGCTCTTCAACAGTCAGCGCCTTCGCTTCTTGTTGCGCCTGACGTTTat                                   <  2:175382/151‑1 (MQ=255)
                                                                                                          aCGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTGTTCGGTTTCCTGAACAGATTGCTCTTCAACATTCAGCGCCTTCGCTTCTTGTTGCGCCTGACGTTTatc                                  <  1:399595/149‑1 (MQ=255)
                                                                                                           cGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTGTTCGGTTTCCTGAACAGATTGCTCTTCAACATTCAGCGCCTTCGCTTCTTGTTGCGCCTGACGTTTatcatc                               >  1:677435/1‑151 (MQ=255)
                                                                                                           cGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTGTTCGGTTTCCTGAACAGATTGCTCTTCAACATTCAGCGCCTTCGCTTCTTGTTGCGCCTGACGTTTatcatc                               <  2:314488/151‑1 (MQ=255)
                                                                                                                    cGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTGTTCGGTTTCCTGAACAGATTGCTCTTCAACATTCAGCGCCTTCGCTTCTTGTTGCGCCTGACGTTTATCATCATTAcggcg                      >  1:18911/1‑151 (MQ=255)
                                                                                                                    cGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTGTTCGGTTTCCTGAACAGATTGCTCTTCAACATTCAGCGCCTTCGCTTCTTGTTGCGCCTGACGTTTATCATCATTAcggc                       <  2:547938/150‑1 (MQ=255)
                                                                                                                    cGTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTGTTCGGTTTCCTGAACAGATTGCTCTTCAACATTCAGCGCCTTCGCTTCTTGTTGCGCCTGACGTTTATCATCATTAcggc                       <  1:757275/150‑1 (MQ=255)
                                                                                                                     gTAACGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTGTTCGGTTTCCTGAACAGATTGCTCTTCAACATTCAGCGCCTTCGCTTCTTGTTGCGCCTGACGTTTATCATCATTAcggcgg                     >  2:16572/1‑151 (MQ=255)
                                                                                                                      tAACGCACGTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTGTTCGGTTTCCTGAACAGATTGCTCTTCAACATTCAGCGCCTTCGCTTCTTGTTGCGCCTGACGTTTATCATCATTAcggcggc                    >  2:715190/1‑151 (MQ=255)
                                                                                                                        aCGCACTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTGTTCGGTTTCCTGAACAGATTGCTCTTCAACATTCAGCGCCTTCGCTTCTTGTTGCGCCTGACGTTTATCATCATTAcggcggcgg                  >  1:140637/1‑151 (MQ=255)
                                                                                                                             cTTTCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTGTTCGGTTTCCTGAACAGATTGCTCTTCAACATTCAGCGCCTTCGCTTCTTGTTGCGCCTGACGTTTATCATCATTACGGCGGCGGCTAc              <  1:877377/150‑1 (MQ=255)
                                                                                                                               ttCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTGTTCGGTTTCCTGAACAGATTGCTCTTCAACAtt                                                                      <  2:27312/92‑1 (MQ=255)
                                                                                                                               ttCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTGTTCGGTTTCCTGAACAGATTGCTCTTCAACAtt                                                                      >  1:27312/1‑92 (MQ=255)
                                                                                                                                tCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTGTTCGGTTTCCTGAACAGATTGCTCTTCAACATTCAGCGCCTTCGCTTCTTGTTGCGCCTGACGTTTATCATCATTACGGCGGCGGCTACg             >  2:184672/1‑148 (MQ=255)
                                                                                                                                tCTGATTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTGTTCGGTTTCCTGAACAGATTGCTCTTCAACATTCAGCGCCTTCGCTTCTTGTTGCGCCTGACGTTTATCATCATTACGGCGGCGGCTACg             <  2:489566/148‑1 (MQ=255)
                                                                                                                                    aTTGAGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTGTTCGGTTTCCTGAACAGATTGCTCTTCAACATTCAGCGCCTTCGCTTCTTGTTGCGCCTGACGTTTATCATCATTACGGCGGCGGCTACGTTCacg       >  2:410982/1‑150 (MQ=255)
                                                                                                                                        aGCTGATGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTGTTCGGTTTCCTGAACAGATTGCTCTTCAACATTCAGCGCCTTCGCTTCTTGTTGCGCCTGACGTTTATCATCATTACGGCGGCGGCTACGTTCACGAagcg  >  2:394088/1‑151 (MQ=255)
                                                                                                                                              |                                                                                                                                                
CAGCGGGACTTTCACCAGTTCTGTGCGTGGAGCTGGCGCTTCCTGAACAATTGGTTCGGCAGCGACAGTTTCTTCAACCACCGGTGCGACTACCGCTTCTTCGGCTACGCTTTGCTCGTAACGCACTTTCTGATTGAGCTGACGCTGTTTACGACGCGGCTGAACCGGACGTACACGTTCTTCCTGTTCGGTTTCCTGAACAGATTGCTCTTCAACATTCAGCGCCTTCGCTTCTTGTTGCGCCTGACGTTTATCATCATTACGGCGGCGGCTACGTTCACGACGCG  >  NC_000913/1142058‑1142344

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A