Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F50 I3 R1 160 117.2 4331776 85.4% 3699336 149.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,734,168 A→G R2R (CGT→CGC)  clpB ← protein disaggregation chaperone

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,734,1680AG100.0% 428.1 / NA 111R2R (CGT→CGC) clpBprotein disaggregation chaperone
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (52/59);  total (52/59)

Only 100 of 113 total aligned reads displayed.

ATGTTAATAAAGGACTAACCGAACCCCCTTCCTGATTCAGCAGGGCGCTCATTAAATGAAGTGGTTCGATAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCTTTAGGTTATATCAGCC  >  NC_000913/2734020‑2734313
                                                                                                                                                    |                                                                                                                                                 
aTGTTAATAAAGGACTAACCGAACCCCCTTCCTGATTCAGCAGGGCGCTCATTAAATGAAGTGGTTCGATAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCg                                                                                                                                                 <  4:513526/151‑1 (MQ=255)
  gTTAATAAAGGACTAACCGAACCCCCTTCCTGATTCAGCAGGGCGCTCATTAAATGAAGTGGTTCGATAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGgcgc                                                                                                                                                >  1:10126/1‑150 (MQ=255)
     aataaAGGACTAACCGAACCCCCTTCCTGATTCAGCAGGGCGCTCATTAAATGAAGTGGTTCGATAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATa                                                                                                                                             >  4:235752/1‑150 (MQ=255)
     aataaAGGACTAACCGAACCCCCTTCCTGATTCAGCAGGGCGCTCATTAAATGAAGTGGTTCGATAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATa                                                                                                                                             >  4:1068247/1‑150 (MQ=255)
      ataaAGGACTAACCGAACCCCCTTCCTGATTCAGCAGGGCGCTCATTAAATGAAGTGGTTCGATAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAAc                                                                                                                                           >  2:724492/1‑151 (MQ=255)
       taaAGGACTAACCGAACCCCCTTCCTGATTCAGCAGGGCGCTCATTAAATGAAGTGGTTCGATAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAAct                                                                                                                                          >  1:108986/1‑151 (MQ=255)
         aaGGACTAACCGAACCCCCTTCCTGATTCAGCAGGGCGCTCATTAAATGAAGTGGTTCGATAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAActcc                                                                                                                                        <  2:429199/151‑1 (MQ=255)
           ggACTAACCGAACCCCCTTCCTGATTCAGCAGGGCGCTCATTAAATGAAGTGGTTCGATAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAActcctc                                                                                                                                      <  4:665150/151‑1 (MQ=255)
            gACTAACCGAACCCCCTTCCTGATTCAGCAGGGCGCTCATTAAATGAAGTGGTTCGATAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACtcctcc                                                                                                                                     <  2:260068/151‑1 (MQ=255)
             aCTAACCGAACCCCCTTCCTGATTCAGCAGGGCGCTCATTAAATGAAGTGGTTCGATAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTccc                                                                                                                                    <  1:48028/151‑1 (MQ=255)
                aaCCGAACCCCCTTCCTGATTCAGCAGGGCGCTCATTAAATGAAGTGGTTCGATAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCAt                                                                                                                                  >  4:1382989/1‑150 (MQ=255)
                  ccGAACCCCCTTCCTGATTCAGCAGGGCGCTCATTAAATGAAGTGGTTCGATAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAAc                                                                                                                               <  1:164509/151‑1 (MQ=255)
                  ccGAACCCCCTTCCTGATTCAGCAGGGCGCTCATTAAATGAAGTGGTTCGATAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAAc                                                                                                                               <  2:1027910/151‑1 (MQ=255)
                    gAACCCCCTTCCTGATTCAGCAGGGCGCTCATTAAATGAAGTGGTTCGATAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACgg                                                                                                                             >  2:5960/1‑151 (MQ=255)
                    gAACCCCCTTCCTGATTCAGCAGGGCGCTCATTAAATGAAGTGGTTCGATAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACgg                                                                                                                             >  4:244205/1‑151 (MQ=255)
                    gAACCCCCTTCCTGATTCAGCAGGGCGCTCATTAAATGAAGTGGTTCGATAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACgg                                                                                                                             <  2:324855/151‑1 (MQ=255)
                     aaCCCCCTTCCTGATTCAGCAGGGCGCTCATTAAATGAAGTGGTTCGATAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACgg                                                                                                                             >  2:777258/1‑150 (MQ=255)
                     aaCCCCCTTCCTGATTCAGCAGGGCGCTCATTAAATGAAGTGGTTCGATAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGa                                                                                                                            <  2:809306/151‑1 (MQ=255)
                        ccccTTCCTGATTCAGCAGGGCGCTCATTAAATGAAGTGGTTCGATAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATc                                                                                                                          >  3:267755/1‑150 (MQ=255)
                          ccTTCCTGATTCAGCAGGGCGCTCATTAAATGAAGTGGTTCGATAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCaa                                                                                                                        >  2:580359/1‑150 (MQ=255)
                           cTTCCTGATTCAGCAGGGCGCTCATTAAATGAAGTGGTTCGATAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCaa                                                                                                                        >  4:155381/1‑149 (MQ=255)
                              ccTGATTCAGCAGGGCGCTCATTAAATGAAGTGGTTCGATAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTg                                                                                                                   <  4:1256287/151‑1 (MQ=255)
                                 gATTCAGCAGGGCGCTCATTAAATGAAGTGGTTCGATAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGc                                                                                                                  <  4:1566841/149‑1 (MQ=255)
                                 gATTCAGCAGGGCGCTCATTAAATGAAGTGGTTCGATAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCt                                                                                                                 <  4:66643/150‑1 (MQ=255)
                                   ttCAGCAGGGCGCTCATTAAATGAAGTGGTTCGATAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACt                                                                                                              >  4:1543004/1‑151 (MQ=255)
                                     cagcagGGCGCTCATTAAATGAAGTGGTTCGATAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTgg                                                                                                            <  4:1213021/151‑1 (MQ=255)
                                       gcagGGCGCTCATTAAATGAAGTGGTTCGATAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGgag                                                                                                          <  4:143712/151‑1 (MQ=255)
                                         agGGCGCTCATTAAATGAAGTGGTTCGATAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTgg                                                                                                            >  4:5880/1‑147 (MQ=255)
                                           ggCGCTCATTAAATGAAGTGGTTCGATAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTa                                                                                                      <  4:408847/151‑1 (MQ=255)
                                              gcTCATTAAATGAAGTGGTTCGATAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAAt                                                                                                   >  2:1648516/1‑151 (MQ=255)
                                              gcTCATTAAATGAAGTGGTTCGATAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAAt                                                                                                   >  4:758271/1‑151 (MQ=255)
                                                 cATTAAATGAAGTGGTTCGATAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAg                                                                                                <  4:1022072/151‑1 (MQ=255)
                                                   ttAAATGAAGTGGTTCGATGAATTGGTTGTCGTGCCCGAGTGCAAGTTATTAGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTGCCATATCGAATCAAAGTTGCTACTGTAGATTAAATGAg                                                                                                <  2:1258653/149‑1 (MQ=255)
                                                    tAAATGAAGTGGTTCGATAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTc                                                                                             >  2:1635984/1‑151 (MQ=255)
                                                      aaTGAAGTGGTTCGATAAATTGTTGGTCGGGCCCGAGTGCAAGTGATTGGGCACCGGCAAGACAAGGCTGGAATTTATAAGTAAGAGGAT‑CAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATc                                                                                          <  2:572145/151‑1 (MQ=255)
                                                      aaTGAAGTGGTTCGATAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCAt                                                                                           >  2:1283039/1‑151 (MQ=255)
                                                       aTGAAGTGGTTCGATAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATc                                                                                          >  2:1275700/1‑151 (MQ=255)
                                                        tGAAGTGGTTCGATAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATcc                                                                                         >  2:1485904/1‑151 (MQ=255)
                                                         gAAGTGGTTCGATAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATcc                                                                                         <  4:1148311/150‑1 (MQ=255)
                                                          aaGTGGTTCGATAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCt                                                                                       >  4:666310/1‑151 (MQ=255)
                                                            gTGGTTCGATAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCa                                                                                     <  4:1587265/151‑1 (MQ=255)
                                                             tGGTTCGATAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCa                                                                                     >  2:1310429/1‑150 (MQ=255)
                                                              ggTTCGATAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAat                                                                                   >  4:1067569/1‑151 (MQ=255)
                                                                   gATAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTc                                                                              <  2:294751/151‑1 (MQ=255)
                                                                   gATAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTc                                                                              <  3:463264/151‑1 (MQ=255)
                                                                     tAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCa                                                                             >  4:965798/1‑150 (MQ=255)
                                                                      aaaTTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAg                                                                           <  2:1041850/151‑1 (MQ=255)
                                                                       aaTTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAgg                                                                          >  4:1277676/1‑151 (MQ=255)
                                                                        aTTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGt                                                                         >  4:1360524/1‑151 (MQ=255)
                                                                        aTTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGt                                                                         <  4:268649/151‑1 (MQ=255)
                                                                           ggTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTa                                                                       <  3:330155/150‑1 (MQ=255)
                                                                           ggTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTa                                                                       <  1:263333/150‑1 (MQ=255)
                                                                           ggTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTAt                                                                      <  2:840698/151‑1 (MQ=255)
                                                                                  gTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGAcc                                                                 >  4:1646309/1‑149 (MQ=255)
                                                                                  gTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGAcc                                                                 >  2:492819/1‑149 (MQ=255)
                                                                                    gCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGAcc                                                                 >  3:356453/1‑147 (MQ=255)
                                                                                     cccGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGAtt                                                            >  4:1163569/1‑151 (MQ=255)
                                                                                      ccGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTa                                                           <  4:569635/151‑1 (MQ=255)
                                                                                       cGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTa                                                           >  2:874338/1‑150 (MQ=255)
                                                                                        gAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAAt                                                         >  2:1045729/1‑151 (MQ=255)
                                                                                             cAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTgaa                                                    <  4:1179441/151‑1 (MQ=255)
                                                                                              aaGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTgaa                                                    >  2:1477509/1‑150 (MQ=255)
                                                                                                gTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTgaaaag                                                 <  2:293832/151‑1 (MQ=255)
                                                                                                gTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTgaaaag                                                 <  2:1613170/151‑1 (MQ=255)
                                                                                                  gATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTgaaaagaa                                               <  4:324499/151‑1 (MQ=255)
                                                                                                    ttGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTgaaaagaaa                                              >  4:763087/1‑150 (MQ=255)
                                                                                                     tGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTgaaaagaaaa                                             <  1:113397/150‑1 (MQ=255)
                                                                                                      gggCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAAt                                            <  2:1156402/150‑1 (MQ=255)
                                                                                                      gggCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAAt                                            <  4:735581/150‑1 (MQ=255)
                                                                                                       ggCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCa                                          <  2:439769/151‑1 (MQ=255)
                                                                                                        gCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTgaaaagaaaa                                             >  1:424708/1‑147 (MQ=255)
                                                                                                        gCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTgaaaagaaaa                                             <  3:424726/147‑1 (MQ=255)
                                                                                                          aTCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCAcgc                                       >  4:1582272/1‑151 (MQ=255)
                                                                                                           tCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCAcgcg                                      >  1:447268/1‑151 (MQ=255)
                                                                                                            cGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCAcgcg                                      <  4:1487766/150‑1 (MQ=255)
                                                                                                            cGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCAcgca                                      <  2:235376/150‑2 (MQ=255)
                                                                                                            cGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGt                                     >  4:314875/1‑151 (MQ=255)
                                                                                                             ggCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGt                                     >  4:1318296/1‑150 (MQ=255)
                                                                                                             ggCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGt                                     >  4:871687/1‑150 (MQ=255)
                                                                                                                      aaGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCg                            <  4:1447014/150‑1 (MQ=255)
                                                                                                                      aaGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGt                           <  4:901572/151‑1 (MQ=255)
                                                                                                                      aaGCTGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGt                           >  2:1151805/1‑151 (MQ=255)
                                                                                                                          tGGAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGACAAGAAAATCACGCGTACCGGATCGTCTTg                       >  1:143768/1‑151 (MQ=255)
                                                                                                                           ggAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTg                       <  3:76138/150‑1 (MQ=255)
                                                                                                                           ggAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGa                      <  4:5971/151‑1 (MQ=255)
                                                                                                                           ggAATTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGa                      <  4:778280/151‑1 (MQ=255)
                                                                                                                             aaTTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGAtt                    >  4:381451/1‑151 (MQ=255)
                                                                                                                             aaTTTATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGAtt                    <  2:835735/151‑1 (MQ=255)
                                                                                                                               tttATTAGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCt                  >  4:195791/1‑151 (MQ=255)
                                                                                                                                  attaGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCttt                <  2:1541091/150‑1 (MQ=255)
                                                                                                                                  attaGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCttt                <  3:245211/150‑1 (MQ=255)
                                                                                                                                     aGTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCTTTAgg             <  4:581163/150‑1 (MQ=255)
                                                                                                                                      gTAAGACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCTTTAGGtt           <  4:1186874/151‑1 (MQ=255)
                                                                                                                                          gACGATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCTTTAGGTTatat       <  2:332833/151‑1 (MQ=255)
                                                                                                                                             gATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCTTTAGGTTATATCAg    <  1:180678/151‑1 (MQ=255)
                                                                                                                                             gATCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCTTTAGGTTATATCAg    <  2:1358828/151‑1 (MQ=255)
                                                                                                                                              aTCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCTTTAGGTTATATCAGc   >  3:29877/1‑151 (MQ=255)
                                                                                                                                               tCCAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCTTTAGGTTATATCAGcc  >  1:311193/1‑151 (MQ=255)
                                                                                                                                                ccAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCTTTAGGTTATATCAGcc  >  4:1434915/1‑150 (MQ=255)
                                                                                                                                                ccAGGCGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCTTTAGGTTATATCAGcc  >  2:64011/1‑150 (MQ=255)
                                                                                                                                                    |                                                                                                                                                 
ATGTTAATAAAGGACTAACCGAACCCCCTTCCTGATTCAGCAGGGCGCTCATTAAATGAAGTGGTTCGATAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCTTTAGGTTATATCAGCC  >  NC_000913/2734020‑2734313

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A