Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F50 I2 R1
|
193 |
39.9 |
1341687 |
91.8% |
1231668 |
149.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,836,534 |
(C)6→7 |
pseudogene (110/132 nt) |
yicT → |
pseudogene |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,836,528 | 1 | . | C | 100.0%
| 104.8
/ NA
| 29 | pseudogene (104/132 nt) | yicT | pseudogene |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (11/18); total (11/18) |
GCTCAATATTCAATCGGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑‑CCCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGACTATTCTATTTCTTTAACCGCTGGCGAAAAAAACTG > NC_000913/3836378‑3836649
|
gCTCAATATTCAATCGGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTg > 1:629869/1‑151 (MQ=255)
atatTCAATCGGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑‑ccccc > 1:418594/1‑151 (MQ=255)
tatTCAATCGGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑‑cccccc > 2:173781/1‑151 (MQ=255)
tCAATCGGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑‑ccccccctg > 2:373823/1‑148 (MQ=255)
tCAATCGGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑‑ccccccctg > 2:355558/1‑148 (MQ=255)
aaTCGGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGCTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑‑ccccccctgc > 2:137880/1‑146 (MQ=255)
ggCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGC‑CCCCCCTGCTGAct > 2:21160/1‑151 (MQ=255)
ggCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGC‑CCCCCCTGCTGAct > 2:159401/1‑151 (MQ=255)
ggAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGC‑CCCCCCTGCTGACTCTCAGcc < 2:594972/151‑1 (MQ=255)
aaTACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGC‑CCCCCCTGCTGACTCTCAGCCa > 1:245214/1‑150 (MQ=255)
tGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGC‑CCCCCCTGCTGACTCTCAGCCAACTGTAt > 2:447303/1‑151 (MQ=255)
ggTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGC‑CCCCCCTGCTGACTCTCAGCCAACTGTATc < 2:566780/151‑1 (MQ=255)
aaGGTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGC‑CCCCCCTGCTGACTCTCAGCCAACTGTATCGc < 1:110143/148‑1 (MQ=255)
tgtgATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGCCCCCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGt > 2:14086/1‑151 (MQ=255)
agggACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGC‑CCCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTg < 1:651473/145‑1 (MQ=255)
gAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGC‑CCCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGtttt > 2:492544/1‑151 (MQ=255)
gAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGC‑CCCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGttt < 2:489679/150‑1 (MQ=255)
gAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGC‑CCCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGttt < 1:232036/150‑1 (MQ=255)
gaagaaTCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGC‑CCCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGccc < 2:315400/151‑1 (MQ=255)
aTCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGC‑CCCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGaa < 1:159398/151‑1 (MQ=255)
aTCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGC‑CCCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGa > 2:185757/1‑150 (MQ=255)
gCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGC‑CCCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACAcc < 1:461855/151‑1 (MQ=255)
ccTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGC‑CCCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACAccc < 1:257605/151‑1 (MQ=255)
cGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGC‑CCCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCtttt < 2:228570/150‑1 (MQ=255)
ggTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGC‑CCCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCtttttt < 2:159866/151‑1 (MQ=255)
ggTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGC‑CCCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCttttt < 1:335051/150‑1 (MQ=255)
ttctGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGC‑CCCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACg > 1:228314/1‑151 (MQ=255)
aaCGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGC‑CCCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGActattctatt > 2:321001/1‑151 (MQ=255)
cGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGC‑CCCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGACTATTCTATTTc < 2:350732/151‑1 (MQ=255)
tCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGC‑CCCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGACTATTCTATTTCttt < 1:492542/150‑1 (MQ=255)
ccGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGC‑CCCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGACTATTCTATTTCTTTa < 1:330652/150‑1 (MQ=255)
atatTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGC‑CCCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGACTATTCTATTTCTTTAACCGCt < 1:379192/151‑1 (MQ=255)
tCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGC‑CCCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGACTATTCTATTTCTTTAACCGCTGGc < 2:245215/150‑1 (MQ=255)
aCGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGC‑CCCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGACTATTCTATTTCTTTAACCGCTGGCGa > 1:386433/1‑150 (MQ=255)
aTGCGCCGTGTTTATTTGCAGGTGATTTGC‑CCCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGACTATTCTATTTCTTTAACCGCTGGCGAAAAAAACTg > 1:210655/1‑151 (MQ=255)
|
GCTCAATATTCAATCGGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑‑CCCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGACTATTCTATTTCTTTAACCGCTGGCGAAAAAAACTG > NC_000913/3836378‑3836649
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
