Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F50 I1 R1
|
144 |
141.8 |
4677362 |
93.6% |
4378010 |
150.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,302,141 |
T→C |
E313G (GAG→GGG) |
mdtO ← |
membrane translocase (MDR) of MdtNOP efflux pump, PET family |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,302,141 | 0 | T | C | 98.7%
| 543.4
/ ‑3.5
| 153 | E313G (GAG→GGG) | mdtO | membrane translocase (MDR) of MdtNOP efflux pump, PET family |
| Reads supporting (aligned to +/- strand): ref base T (1/1); new base C (63/88); total (64/89) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.71e-01 |
Only 100 of 155 total aligned reads displayed.
AAACAGGCGAGCAGCGTTTTTACCGCGTAGCGCATATAGTCTGGATTGGTAAAAGCATCGGCGGCCATTGATGGCGGTTTGGCTGCGGGCGTTGGCGGCGTATTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCTCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCGCCAGTCGCTTTGCCAGCACTGACCTTCAGCAACGGCATGCTGCAGCTTGTTGATTTCTGAAGCTAATTTTTGTCGGAATTCAATAATTGCCTGAGAATCA > NC_000913/4301994‑4302287
|
aaaCAGGCGAGCAGCGTTTTTACCGCGTAGCGCATATAGTCTGGATTGGTAAAAGCATCGGCGGCCATTGATGGCGGTTTGGCTGCGGGCGTTGGCGGCGTATTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTcccc > 2:67620/1‑150 (MQ=255)
aaaCAGGCGAGCAGCGTTTTTACCGCGTAGCGCATATAGTCTGGATTGGTAAAAGCATCGGCGGCCATTGATGGCGGTTTGGCTGCGGGCGTTGGCGGCGTATTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCa < 1:219642/151‑1 (MQ=255)
aaCAGGCGAGCAGCGTTTTTACCGCGTAGCGCATATAGTCTGGATTGGTAAAAGCATCGGCGGCCATTGATGGCGGTTTGGCTGCGGGCGTTGGCGGCGTATTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTcccc > 2:1138358/1‑149 (MQ=255)
aGGCGAGCAGCGTTTTTACCGCGTAGCGCATATAGTCTGGATTGGTAAAAGCATCGGCGGCCATTGATGGCGGTTTGGCTGCGGGCGTTGGCGGCGTATTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGtt < 4:586988/151‑1 (MQ=255)
ggCGAGCAGCGTTTTTACCGCGTAGCGCATATAGTCTGGATTGGTAAAAGCATCGGCGGCCATTGATGGCGGTTTGGCTGCGGGCGTTGGCGGCGTATTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTa < 2:299473/151‑1 (MQ=255)
ggCGAGCAGCGGTTTTACCGCGGAACGCATATAGTCTGGATTGGTAAAAGCATCGGCGGGCATTGATGGCGGTTTGGCTGCGGGCGTTGGCGGCGTATTCGGGTCCATCTGCCCCAGTTGTAGCAACGTCTGGCAGATATTCCCCAgg < 1:1258050/148‑1 (MQ=255)
cGAGCAGCGTTTTTACCGCGTAGCGCATATAGTCTGGATTGGTAAAAGCATCGGCGGCCATTGATGGCGGTTTGGCTGCGGGCGTTGGCGGCGTATTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTAc > 2:378714/1‑150 (MQ=255)
cagcGTTTTTACCGCGTAGCGCATATAGTCTGGATTGGTAAAAGCATCGGCGGCCATTGATGGCGGTTTGGCTGCGGGCGTTGGCGGCGTATTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTcc < 2:1622731/151‑1 (MQ=255)
agcGTTTTTACCGCGTAGCGCATATAGTCTGGATTGGTAAAAGCATCGGCGGCCATTGATGGCGGTTTGGCTGCGGGCGTTGGCGGCGTATTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTccc > 2:601039/1‑151 (MQ=255)
cGTTTTTACCGCGTAGCGCATATAGTCTGGATTGGTAAAAGCATCGGCGGCCATTGATGGCGGTTTGGCTGCGGGCGTTGGCGGCGTATTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGt < 2:1638330/151‑1 (MQ=255)
cGTTTTTACCGCGTAGCGCATATAGTCTGGATTGGTAAAAGCATCGGCGGCCATTGATGGCGGTTTGGCTGCGGGCGTTGGCGGCGTATTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGt > 1:793748/1‑151 (MQ=255)
gTTTTTACCGCGTAGCGCATATAGTCTGGATTGGTAAAAGCATCGGCGGCCATTGATGGCGGTTTGGCTGCGGGCGTTGGCGGCGTATTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTg < 1:200749/151‑1 (MQ=255)
gTTTTTACCGCGTAGCGCATATAGTCTGGATTGGTAAAAGCATCGGCGGCCATTGATGGCGGTTTGGCTGCGGGCGTTGGCGGCGTATTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTg > 2:1220019/1‑151 (MQ=255)
gTTTTTACCGCGTAGCGCATATAGTCTGGATTGGTAAAAGCATCGGCGGCCATTGATGGCGGTTTGGCTGCGGGCGTTGGCGGCGTATTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTg > 1:836927/1‑151 (MQ=255)
tttttACCGCGTAGCGCATATAGTCTGGATTGGTAAAAGCATCGGCGGCCATTGATGGCGGTTTGGCTGCGGGCGTTGGCGGCGTATTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTgc > 4:191161/1‑151 (MQ=255)
ttttACCGCGTAGCGCATATAGTCTGGATTGGTAAAAGCATCGGCGGCCATTGATGGCGGTTTGGCTGCGGGCGTTGGCGGCGTATTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCTCCAGGTTACATTCCCGTgcc > 1:1297710/1‑151 (MQ=255)
ttttACCGCGTAGCGCATATAGTCTGGATTGGTAAAAGCATCGGCGGCCATTGATGGCGGTTTGGCTGCGGGCGTTGGCGGCGTATTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTgcc > 2:739629/1‑151 (MQ=255)
ttttACCGCGTAGCGCATATACTCTGGATTGGTAAAAGCATCCGCGGCCATTGATGGCGGCTTGGCTGCGGGCGTTGGCGGCGCATTTGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTgcc > 1:979004/1‑151 (MQ=255)
ttACCGCGTAGCGCATATAGTCTGGATTGGTAAAAGCATCGGCGGCCATTGATGGCGGTTTGGCTGCGGGCGTTGGCGGCGTATTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTgccg < 4:437168/150‑1 (MQ=255)
tACCGCGTAGCGCATATAGTCTGGATTGGTAAAAGCATCGGCGGCCATTGATGGCGGTTTGGCTGCGGGCGTTGGCGGCGTATTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTgccgcc > 3:421449/1‑151 (MQ=255)
tACCGCGTAGCGCATATAGTCTGGATTGGTAAAAGCATCGGCGGCCATTGATGGCGGTTTGGCTGCGGGCGTTGGCGGCGTATTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTgccgc < 1:967498/150‑1 (MQ=255)
aCCGCGTAGCGCATATAGTCTGGATTGGTAAAAGCATCGGCGGCCATTGATGGCGGTTTGGCTGCGGGCGTTGGCGGCGTATTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTgccgcc > 1:1720457/1‑150 (MQ=255)
ccGCGTAGCGCATATAGTCTGGATTGGTAAAAGCATCGGCGGCCATTGATGGCGGTTTGGCTGCGGGCGTTGGCGGCGTATTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCa > 2:1311455/1‑150 (MQ=255)
ccGCGTAGCGCATATAGTCTGGATTGGTAAAAGCATCGGCGGCCATTGATGGCGGCTTCGCTGCAGGCGTTGGCGGCGCATTCGTGTCCATCTGACCCAGTTTTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCa > 1:507813/1‑150 (MQ=255)
cgcgTAGCGCATATAGTCTGGATTGGTAAAAGCATCGGCGGCCATTGATGGCGGTTTGGCTGCGGGCGTTGGCGGCGTATTCGGGTCCATCTGACCCCGTTGTAACAACGTCTGGCAGATATTCCCCAGCTTACATTCCCGTGCCGCCATc < 1:691307/151‑1 (MQ=255)
cgcgTAGCACATATAGTCTGGATTGGTAAAAGCATCGGCGGCCATGGATGGCGTTTTGGCTGCGGGCGGTGGCGGCGTATTCGGGGCCGTCTGGCCCAGTTGTAACAACGTCTGGCAGGTATTCCCGATGTTACATGCCCGTGCCGCGATc < 1:70089/151‑1 (MQ=255)
tAGCGCATATAGTCTGGATTGGTAAAAGCATCGGCGGCCATTGATGGCGGTTTGGCTGCGGGCGTTGGCGGCGTAATCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCtt > 2:1487536/1‑151 (MQ=255)
atatAGTCTGGATTGGTAAAAGCATCGGCGGCCATTGATGGCGGTTTGGCTGCGGGCGTTGGCGGCGTATTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCttcacttt > 1:740142/1‑151 (MQ=255)
gTCTGGATTGGTAAAAGCATCGGCGGCCATTGATGGCGGTTTGGCTGCGGGCGTTGGCGGCGTATTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTg > 1:1049662/1‑151 (MQ=255)
gTCTGGATTGGTAAAAGCATCGGCGGCCATTGATGGCGGTTTGGCTGCGGGCGTTGGCGGCGTATTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTg > 3:78995/1‑151 (MQ=255)
gTCTGGATTGGTAAAAGCATCGGCGGCCATTGATGGCGGTTTGGCTGCGGGCGTTGGCGGCGTATTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTg < 1:997921/151‑1 (MQ=255)
cTGGATTGGTAAAAGCATCGGCGGCCATTGATGGCGGTTTGGCTGCGGGCGTTGGCGGCGTATTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGAt > 2:389701/1‑151 (MQ=255)
ggATTGGTAAAAGCATCGGCGGCCATTGATGGCGGTTTGGCTGCGGGCGTTGGCGGCGTATTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGAt < 4:34353/149‑1 (MQ=255)
gATTGGTAAAAGCATCGGCGGCCATTGATGGCGGTTTGGCTGCGGGCGTTGGCGGCGTATTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATcc > 2:136980/1‑150 (MQ=255)
gATTGGTAAAAGCATCGGCGGCCATTGATGGCGGTTTGGCTGCGGGCGTTGGCGGCGTATTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCg < 4:296878/151‑1 (MQ=255)
gATTGGTAAAAGCATCGGCGGCCATTGATGGCGGTTTGGCTGCGGGCGTTGGCGGCGTATTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCg < 1:372187/151‑1 (MQ=255)
gATTGGTAAAAGCATCGGCGGCCATTGATGGCGGTTTGGCTGCGGGCGTTGGCGGCGTATTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCg < 4:20789/151‑1 (MQ=255)
tGGTAAAAGCATCGGCGGCCATTGATGGCGGTTTGGCTGCGGGCGTTGGCGGCGTATTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCGcc < 2:385683/150‑1 (MQ=255)
ggTAAAAGCATCGGCGGCCATTGATGGCGGTTTGGCTGCGGGCGTTGGCGGCGTATTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCGcc > 2:767541/1‑149 (MQ=255)
ggTAAAAGCATCGGCGGCCATTGATGGCGGTTTGGCTGCGGGCGTTGGCGGCGTATTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCGCCa < 1:468469/150‑1 (MQ=255)
ggTAAAAGCATCGGCGGCCATTGATGGCGGTTTGGCTGCGGGCGTTGGCGGCGTATTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCGCCAg < 2:1478834/151‑1 (MQ=255)
aaaaGCATCGGCGGCCATTGATGGCGGTTTGGCTGCGGGCGTTGGCGGCGTATTCGGGTCCATCTGACCCAGGTGGAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCAACGCTTCACGTTCAATGAGCCGCCAGTCg > 1:430619/1‑151 (MQ=255)
aTCGGCGGCCATTGATGGCGGTTTGGCTGCGGGCGTTGGCGGCGTATTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCGCCAGTCGCTTTGc < 2:133459/151‑1 (MQ=255)
cggcggCCATTGATGGCGGTTTGGCTGCGGGCGTTGGCGGCGTATTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCGCCAGTCGCTTTGCCa < 2:105465/151‑1 (MQ=255)
cggcggCCATTGATGGCGGTTTGGCTGCGGGCGTTGGCGGCGTATTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCGCCAGTCGCTTTGCCa < 2:1737728/151‑1 (MQ=255)
ggcggcCATTGATGGCGGTTTGGCTGCGGGCGTTGGCGGCGTATTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCGCCAGTCGCTTTGcc > 2:1292292/1‑149 (MQ=255)
aTTGATGGCGGTTTGGCTGCGGGCGTTGGGGGCGTATTAGGGTCCATATGACCCAGTTGTAACAACGTCTGGGAGATATTCCCCAGGGTAAATTCCCGGGCCGCCATCGGTTCACTTTCCATGAGCCGCCAGGCGCTTTGCCAGCACTGa > 1:81068/1‑150 (MQ=255)
gATGGCGGTTTGGCTGCGGGCGTTGGCGGCGTATTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCGCCAGTCGCTTTGCCAGCACTGACCtt < 1:1294342/151‑1 (MQ=255)
aTGGCGGTTTGGCTGCGGGCGTTGGCGGCGTATTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCGCTTTCACTGATCCGCCAGTCGCTTTGCCAGCACTGACCTTc < 2:672967/151‑1 (MQ=255)
cGGTTTGGCTGCGGGCGTTGGCGGCGTATTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCGCCAGTCGCTTTGCCAGCACTGACCTTCAGc > 1:596804/1‑150 (MQ=255)
ggTTTGGCTGCGGGCGTTGGCGGCGTATTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCGCCAGTCGCTTTGCCAGCACTGACCTTCAGCa > 1:474355/1‑150 (MQ=255)
gTTTGGCTGCGGGCGTTGGCGGCGTATTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCGCCAGTCGCTTTGCCAGCACTGACCTTCAGCAAc < 2:168147/151‑1 (MQ=255)
ggCTGCGGGCGTTGGCGGCGTATTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCGCCAGTCGCTTTGCCAGCACTGACCTTCAGCAACGGc < 3:356507/150‑1 (MQ=255)
gctgctGGCGTGGGCGGCGTATTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGAGCCGCCAGGCGCTTTGCCAGCACTGCCCTTCAGCAACgg < 1:1109450/148‑1 (MQ=255)
gCTGCGGGCGTTGGCGGCGTATTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCGCCAGTCGCTTTGCCAGCACTGACCTTCAGCAACGGCAt > 3:42043/1‑151 (MQ=255)
tGCGGGCGTTGGCGGCGTATTCGGGTCCATCTGACACAGTTGTAACAACGTCTGGCAGATAGTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCGCCAGTCGCTTTGCCAGCACTGACCTTCAGCAACGGCAtgc > 4:256673/1‑151 (MQ=255)
gCGGGCGTTGGCGGCGTATTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCGCCAGTCGCTTTGCCAGCACTGACCTTCAGCAACGGCAtg < 3:183229/149‑1 (MQ=255)
ggCGTTGGCGGCGTATTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCGCCAGTCGCTTTGCCAGCACTGACCTTCAGCAACGGCATGCTGCa < 1:1150763/151‑1 (MQ=255)
gTTGGCGGCGTATTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCGCCAGTCGCTTTGCCAGCACTGACCTTCAGCAACGGCATGCTGCAGCt > 4:386490/1‑151 (MQ=255)
gTTGGCGGCGTATTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCGCCAGTCGCTTTGCCAGCACTGACCTTCAGCAACGGCATGCTGCAGCt < 1:629387/151‑1 (MQ=255)
gTTGGCGGCGTATTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCGCCAGTCGCTTTGCCAGCACTGACCTTCAGCAACGGCATGCTGCAGCt > 1:377774/1‑151 (MQ=255)
ggcggcGTATTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCGCCAGTCGCTTTGCCAGCACTGACCTTCAGCAACGGCATGCTGCAGCttgt > 2:77952/1‑151 (MQ=255)
ggcggcGTATTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCGCCAGTCGCTTTGCCAGCACTGACCTTCAGCAACGGCATGCTGCAGCttg < 1:1267561/150‑1 (MQ=255)
ggcgTATTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCGCCAGTCGCTTTGCCAGCACTGACCTTCAGCAACGGCATGCTGCAGCttgttg > 1:28116/1‑150 (MQ=255)
ggcgTATTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCGCCAGTCGCTTTGCCAGCACTGACCTTCAGCAACGGCATGCTGCAGCTTGTTGa < 1:1328581/151‑1 (MQ=255)
cgTATTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCGCCAGTCGCTTTGCCAGCACTGACCTTCAGCAACGGCATGCTGCAGCTTGTTGAt < 1:833519/150‑1 (MQ=255)
tATTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCGCCAGTCGCTTTGCCAGCACTGACCTTCAGCAACGGCATGCTGCAGCTTGTTGATTTc > 2:1119488/1‑151 (MQ=255)
aTTCGGGTTCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCGCCAGTCGCTTTGCCAGCACTGACCTTCAGCAACGGCATGCTGCAGCTTGTTGATTTCt < 2:619327/151‑1 (MQ=255)
aTTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCGCCAGTCGCTTTGCCAGCACTGACCTTCAGCAACGGCATGCTGCAGCTTGTTGATTTCt > 2:1200354/1‑151 (MQ=255)
aTTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCGCCAGTCGCTTTGCCAGCACTGACCTTCAGCAACGGCATGCTGCAGCTTGTTGATTTCt > 1:1516096/1‑151 (MQ=255)
aTTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCGCCAGTCGCTTTGCCAGCACTGACCTTCAGCAACGGCATGCTGCAGCTTGTTGATTTCt > 1:1428620/1‑151 (MQ=255)
tCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCGCCAGTCGCTTTGCCAGCACTGACCTTCAGCAACGGCATGCTGCAGCTTGTTGATTTCTg < 3:257821/150‑1 (MQ=255)
cGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCGCCAGTCGCTTTGCCAGCACTGACCTTCAGCAACGGCATGCTGCAGCTTGTTGATTTCTGaa < 1:165335/151‑1 (MQ=255)
ccATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCGCCAGTCGCTTTGCCAGCACTGACCTTCAGCAACGGCATGCTGCAGCTTGTTGATTTCTGAAGCTaa < 2:396220/151‑1 (MQ=255)
tGACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCGCCAGTCGCTTTGCCAGCACTGACCTTCAGCAACGGCATGCTGCAGCTTGTTGATTTCTGAAGCTAAttttt > 2:86482/1‑151 (MQ=255)
gACCCAGTTGTAACAACGTCTTGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCGCCAGTCGCTTTGCCAGCACTGACCTTCAGCAACGGCATGCTGCAGCTTGTTGATTTCTGACGCTAAtt < 1:1353012/147‑1 (MQ=255)
gACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCGCCAGTCGCTTTGCCAGCACTGACCTTCAGCAACGGCATGCTGCAGCTTGTTGATTTCTGAAGCTAAttttt < 2:1393198/150‑1 (MQ=255)
gACCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCGCCAGTCGCTTTGCCAGCACTGACCTTCAGCAACGGCATGCTGCAGCTTGTTGATTTCTGAAGCTAAtttt < 1:1033688/149‑1 (MQ=255)
aCCCAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCGCCAGTCGCTTTGCCAGCACTGACCTTCAGCAACGGCATGCTGCAGCTTGTTGATTTCTGAAGCTAATTTTTGt < 1:811844/151‑1 (MQ=255)
cccAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCGCCAGTCGCTTTGCCAGCACTGACCTTCAGCAACGGCATGCTGCAGCTTGTTGATTTCTGAAGCTAATTTTTGTc > 1:1342974/1‑151 (MQ=255)
ccAGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCGCCAGTCGCTTTGCCAGCACTGACCTTCAGCAACGGCATGCTGCAGCTTGTTGATTTCTGAAGCTAATTTTTGTCg < 3:3333/151‑1 (MQ=255)
aGTTGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCGCCAGTCGCTTTGCCAGCACTGACCTTCAGCAACGGCATGCTGCAGCTTGTTGATTTCTGAAGCTAATTTTTGTCGGa < 1:259176/151‑1 (MQ=255)
ttGTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCGCCAGTCGCTTTGCCAGCACTGACCTTCAGCAACGGCATGCTGCAGCTTGTTGATTTCTGAAGCTAATTTTTGTCGGAAt > 1:1651067/1‑151 (MQ=255)
gTAACAACGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCGCCAGTCGCTTTGCCAGCACTGACCTTCAGCAACGGCATGCTGCAGCTTGTTGATTTCTGAAGCTAATTTTTGTCGGAAtt < 2:1049790/150‑1 (MQ=255)
aacaccGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCGCCAGTCGCTTTGCCAGCACTGACCTTCAGCAACGGCATGCTGCAGCTTGTTGATTTCTGAAGCTAATTTTTGTCGGAATTCaa < 1:1147695/151‑1 (MQ=255)
aacaacGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCGCCAGTCGCTTTGCCAGCACTGACCTTCAGCAACGGCATGCTGCAGCTTGTTGATTTCTGAAGCTAATTTTTGTCGGAATTCaa < 2:740251/151‑1 (MQ=255)
aacaacGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCGCCAGTCGCTTTGCCAGCACTGACCTTCAGCAACGGCATGCTGCAGCTTGTTGATTTCTGAAGCTAATTTTTGTCGGAATTCaa < 1:547063/151‑1 (MQ=255)
aacaacGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCGCCAGTCGCTTTGCCAGCACTGACCTTCAGCAACGGCATGCTGCAGCTTGTTGATTTCTGAAGCTAATTTTTGTCGGAATTCa < 1:1517692/150‑1 (MQ=255)
acGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCGCCAGTCGCTTTGCCAGCACTGACCTTCAGCAACGGCATGCTGCAGCTTGTTGATTTCTGAAGCTAATTTTTGTCGGAATTCaataat < 1:1449030/151‑1 (MQ=255)
acGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCGCCAGTCGCTTTGCCAGCACTGACCTTCAGCAACGGCATGCTGCAGCTTGTTGATTTCTGAAGCTAATTTTTGTCGGAATTCaataat < 2:503491/151‑1 (MQ=255)
cGTCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCGCCAGTCGCTTTGCCAGCACTGACCTTCAGCAACGGCATGCTGCAGCTTGTTGATTTCTGAAGCTAATTTTTGTCGGAATTCAATAAtt < 1:777880/151‑1 (MQ=255)
tCTGGCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCGCCAGTCGCTTTGCCAGCACTGACCTTCAGCAACGGCATGCTGCAGCTTGTTGATTTCTGAAGCTAATTTTTGTCGGAATTCAATAATTGc > 1:185792/1‑151 (MQ=255)
ggCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCGCCAGTCGCTTTGCCAGCACTGACCTTCAGCAACGGCATGCTGCAGCTTGTTGATTTCTGAAGCTAATTTTTGTCGGAATTCAATAATTGc < 1:1114001/148‑1 (MQ=255)
gCAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCGCCAGTCGCTTTGCCAGCACTGACCTTCAGCAACGGCATGCTGCAGCTTGTTGATTTCTGAAGCTAATTTTTGTCGGAATTCAATAATTGCCTga < 1:176189/151‑1 (MQ=255)
cAGATATTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCGCCAGTCGCTTTGCCAGCACTGACCTTCAGCAACGGCATGCTGCAGCTTGTTGATTTCTGAAGCTAATTTTTGTCGGAATTCAATAATTGCCTgag < 2:461939/151‑1 (MQ=255)
gATATTCCCCAGGTTACATTCCGGTGCCGCCATCGCTTCACTTTCACTGATCCGCCAGTCGCTTTGCCAGCACTGACCTTCAGCAACGGCATGCTGCAGCTTGTTGATTTCTGAAGCTAATTTTTGTCGGAATTCAATAATTGCCTgaga < 4:570030/150‑1 (MQ=255)
atTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCGCCAGTCGCTTTGCCAGCACTGACCTTCAGCAACGGCATGCTGCAGCTTGTTGATTTCTGAAGCTAATTTTTGTCGGAATTCAATAATTGCCTGAGAATc > 2:87986/1‑150 (MQ=255)
atTCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCGCCAGTCGCTTTGCCAGCACTGACCTTCAGCAACGGCATGCTGCAGCTTGTTGATTTCTGAAGCTAATTTTTGTCGGAATTCAATAATTGCCTGAGAATCa < 2:661435/151‑1 (MQ=255)
atTCCCCAGGGTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCGCCAGTCGCTTTGCCAGCACTGACCTTCAGCAACGGCATGCTGCAGCTTGTTGATTTCTGAAGCTAATTTTTGTCGGAATTCAATAATTGCATGAGAATc > 2:835576/1‑150 (MQ=255)
ttCCCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCGCCAGTCGCTTTGCCAGCACTGACCTTCAGCAACGGCATGCTGCAGCTTGTTGATTTCTGAAGCTAATTTTTGTCGGAATTCAATAATTGCCTGAGAATc > 2:57307/1‑149 (MQ=255)
|
AAACAGGCGAGCAGCGTTTTTACCGCGTAGCGCATATAGTCTGGATTGGTAAAAGCATCGGCGGCCATTGATGGCGGTTTGGCTGCGGGCGTTGGCGGCGTATTCGGGTCCATCTGACCCAGTTGTAACAACGTCTGGCAGATATTCTCCAGGTTACATTCCCGTGCCGCCATCGCTTCACTTTCACTGATCCGCCAGTCGCTTTGCCAGCACTGACCTTCAGCAACGGCATGCTGCAGCTTGTTGATTTCTGAAGCTAATTTTTGTCGGAATTCAATAATTGCCTGAGAATCA > NC_000913/4301994‑4302287
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
