Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F50 I1 R1
|
144 |
141.8 |
4677362 |
93.6% |
4378010 |
150.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,308,664 |
C→T |
G269D (GGC→GAC) |
alsC ← |
D‑allose ABC transporter permease |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,308,664 | 0 | C | T | 99.2%
| 517.7
/ ‑4.9
| 132 | G269D (GGC→GAC) | alsC | D‑allose ABC transporter permease |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base T (68/63); total (68/64) |
| Fisher's exact test for biased strand distribution p-value = 4.85e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.13e-01 |
Only 100 of 136 total aligned reads displayed.
GACAGCCGCGATAATTAATCCGCCCATCACCACCAGTTGGTAATAGGTTTGTACCTGCAAAATATTCAGACCGTTGTTGATGG‑TGCCGATGATCAACCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGCCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCACCGAGTCGTGCAGTTGAGACGACGCCTGCCAGACCTGCACAAACACCGGAGATGATAAACACCACCAGGATGTGGAATTTCA > NC_000913/4308516‑4308811
|
gATAATTAATCCGCCCATCACCACCAGTTGGTAATAGGTTTGTACCTGCAAAATATTCAGACCGTTGTTGATGG‑TGCCGATGATCAACCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAatgatg > 1:514043/1‑151 (MQ=255)
aTAATTAATCCGCCCATCACCACCAGTTGGTAATAGGTTTGTACCTGCAAAATATTCAGACCGTTTTTGATGG‑TGCCGATGATCAACCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATgg < 1:1210552/151‑1 (MQ=255)
taattaatCCGCCCATCACCACCAGTTGGTAATAGGTTTGTACCTGCAAAATATTCAGACCGTTGTTGATGG‑TGCCGATGATCAACCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATgg > 2:1355070/1‑150 (MQ=255)
aattaacCCGCCCATCACCCCCAGTTGGTAATAGGTTTGTACCTGCAAAATATTCAGACCGTTTTTGATGG‑TGCCGATGATCAACCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAatga < 1:963199/146‑1 (MQ=255)
attaatCCGCCCATCACCACCAGTTGGTAATAGGTTTGTACCTGCAAAATATTCAGACCGTTGTTGATGG‑TGCCGATGATCAACCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGgcgc < 3:412962/151‑1 (MQ=255)
taatCCGCCCATCACCACCAGTTGGTAATAGGTTTGTACCTGCAAAATATTCAGACCGTTGTTGATGG‑TGCCGATGATCAACCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTg > 1:1073932/1‑151 (MQ=255)
atCCGCCCATCACCACCAGTTGGTAATAGGTTTGTACCTGCAAAATATTCAGACCGTTGTTGATGG‑TGCCGATGATCAACCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGc > 2:1165297/1‑151 (MQ=255)
tCCGCCCATCACCACCAGTTGGTAATAGGTTTGTACCTGCAAAATATTCAGACCGTTGTTGATGG‑TGCCGATGATCAACCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGc > 4:39945/1‑150 (MQ=255)
ccGCCCATCACCACCAGTTGGTAATAGGTTTGTCCCTGCAAAATATTCAGACCGTTGTTGAGGG‑TGCCGATGATCAACCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCaa < 2:832859/151‑1 (MQ=255)
ccGCCCACCCCCACCAGTTGGTAATAGGTTTGTACCTGCAAAATATTCAGACCGTTGTTGTTGG‑TGCCGATGATCACCCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTTGCat < 4:140695/151‑2 (MQ=255)
cATCACCACCAGTTGGTAATAGGTTTGTACCTGCAAAATATTCAGACCGTTGTTGATGG‑TGCCGATGATCAACCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGc > 1:845651/1‑150 (MQ=255)
aTCACCACCAGTTGGTAATAGGTTTGTACCTGCAAAATATTCAGACCGTTGTTGATGG‑TGCCGATGATCAACCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCAt > 3:124127/1‑151 (MQ=255)
tCACCACCAGTTGGTAATAGGTTTGTACCTGCAAAATATTCAGACCGTTGTTGATGG‑TGCCGATGATCAACCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCAt > 1:1002635/1‑150 (MQ=255)
caccacCAGTTGGTAATAGGTTTGTACCTGCAAAATATTCAGACCGTTGTTGATGG‑TGCCGATGATCAACCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCAt > 3:591114/1‑149 (MQ=255)
caccacCAGTTGGTAATAGGTTTGTACCTGCAAAATATTCAGACCGTTGTTGATGG‑TGCCGATGATCAACCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCAt < 1:242844/149‑1 (MQ=255)
accaccAGTTGGTAATAGGTTTGTACCTGCAAAATATTCAGACCGTTGTTGATGG‑TGCCGATGATCAACCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAgg > 3:128868/1‑151 (MQ=255)
accaccAGTTGGTAATAGGTTTGTACCTGCAAAATATTCAGACCGTTGTTGATGG‑TGCCGATGATCAACCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAgg > 1:511806/1‑151 (MQ=255)
ccaccaGTTGGTAATAGGTTTGTACCTGCAAAATATTCAGACCGTTGTTGATGG‑TGCCGATGATCAACCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAgg < 2:127571/150‑1 (MQ=255)
caccaGTTGGTAATAGGTTTGTACCTGCAAAATATTCAGACCGTTGTTGATGG‑TGCCGATGATCAACCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGtt > 2:1375179/1‑151 (MQ=255)
ccaGTTGGTAATAGGTTTGTACCTGCAAAATATTCAGACCGTTGTTGATGG‑TGCCGATGATCAACCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGttt < 4:12236/150‑1 (MQ=255)
gtgggTAATAGGTTTGAACCTGAAAAATATCCAGACCGTTGTTGATGG‑GGCCGATGATCAACCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCa < 1:897093/146‑1 (MQ=255)
aaTAGGTTTGTCCCTGCAAAATATTCAGACCGTTGTTGATGG‑TGCCGATGATAAACCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCaaa < 1:507096/145‑1 (MQ=255)
aaTAGGTTTGTACCTGAAAAATTTTCAGACC‑TTTTTTATGGTTGCGGATAATCAACCCGCCAATCTCCACAGAGAAAATGCGCCCCTTCCCGCCGAAGAAACTGCTGCCGCCACTGATGGCGCTGGCAATGGCATAGGTTTCaaatc < 4:492175/147‑3 (MQ=255)
tAGGTTTGTACCTGCAAAATATTCAGACCGTTGTTGATGG‑TGCCGATGATCAACCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATa < 2:1668038/150‑1 (MQ=255)
aGGTTTGTACCTGCAAAATATTCAGACCGTTGTTGATGG‑TGCCGATGATCAACCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATAcc < 2:810457/151‑1 (MQ=255)
ggTTTGTACCTGCAAAATATTCAGACCGTTGTTGATGG‑TGCCGATGACCAACCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCg < 2:1171678/151‑1 (MQ=255)
tttGTACCTGCAAAATATTCAGACCGTTGTTGATGG‑TGCCGATGATCAACCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCgg < 2:957454/150‑1 (MQ=255)
tGTACCTGCAAAATATTCAGACCGTTGTTGATGG‑TGCCGATGATCAACCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCa > 2:1614513/1‑150 (MQ=255)
gTACCTGCAAAATATTCAGACCGTTGTTCAGGG‑TGCCGATGATCAACCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCaa < 2:1292458/150‑1 (MQ=255)
aCCTGCAAAATATTCAGACCGTTGTTGATGG‑TGCCGATGATCAACCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGc > 2:1163012/1‑150 (MQ=255)
aCCTGCAAAATATTCAGACCGTTGTTGATGG‑TGCCGATGATCAACCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGGTTCAAAACCCATACCGGCAAGCg > 1:915253/1‑151 (MQ=255)
cTGCAAAATATTCAGACCGTTGTTGATGG‑TGCCGATGATCAACCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGt > 2:1576125/1‑151 (MQ=255)
tGCAAAATATTCAGACCGTTGTTGATGG‑TGCCGATGATCAACCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGtt > 1:580045/1‑151 (MQ=255)
aaaaTATTCAGACCGTTTTTGATGT‑TGCCGATGATCAACCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCt < 1:1591656/150‑1 (MQ=255)
aaaaTATTCAGACCGTTGTTGATGG‑TGCCGATGATCAACCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTg > 3:67806/1‑151 (MQ=255)
aaTATTCAGACCGTTGTTGATGG‑TGCCGATGATCAACCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCg > 2:793664/1‑151 (MQ=255)
atTCAGACCGTTGTTGATGG‑TGCCGATGATCAACCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGc > 2:213069/1‑150 (MQ=255)
ttCAGACCGTTGTTGGTGG‑TGCCGATGATCACCCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCa < 1:494004/150‑1 (MQ=255)
ttCAGACCGTTGTTGATGG‑TGCCGATGATCAACCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCa < 4:107955/150‑1 (MQ=255)
cAGACCGTTGTTGATGG‑TGCCGATGATCAACCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCAcc < 3:15460/150‑1 (MQ=255)
aGACCGTTGTTGATGG‑TGCCGATGATCAACCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCACCg > 2:1416333/1‑150 (MQ=255)
gACCGTTGTTGATGG‑TGCCGATGATCAACCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCACCg > 1:749864/1‑149 (MQ=255)
gACCGTTGTTGATGG‑TGCCGATGATCAACCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCACCg > 2:1548394/1‑149 (MQ=255)
gACCGTTGTTGATGG‑GGCCGATGATCAACCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCACCGa < 1:1405543/150‑1 (MQ=255)
ccGTTGTTGATGG‑TGCCGATGATCAACCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCACCGAGTc > 2:912684/1‑151 (MQ=255)
ccGTTGTTGATGG‑TGCCGATGATCAACCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCACCGAGTc < 4:388069/151‑1 (MQ=255)
ccGTTGTTGATGG‑TGCCGATGATCAACCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCACCGAGTc < 3:275291/151‑1 (MQ=255)
gttcATGG‑TGCGAAGGATCAACCCGCCAAACGCCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCACCGAGTCGTGc < 1:1572463/150‑1 (MQ=255)
tgATGG‑TGCCGATGATCAACCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCACCGAGTCGTGCAg < 2:1285545/150‑1 (MQ=255)
tgATGG‑TGCCGATGATCAACCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCACCGAGTCGTGCAGt > 1:210931/1‑151 (MQ=255)
gg‑TGCCGATGATCAACCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCACCGAGTCGTGCAGTTg > 2:1639370/1‑149 (MQ=255)
g‑TGCCGATGATCAACCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCACCGAGTCGTGCAGTTgaga < 3:84105/151‑1 (MQ=255)
cGATGATCAACCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCACCGAGTCGTGCAGTTGAgacgac > 2:1250116/1‑151 (MQ=255)
gatgatCAACCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCACCGAGTCGTGCAGTTGAGacgacg > 2:122937/1‑151 (MQ=255)
tgatCAACCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCACCGAGTCGTGCAGTTGAGACGACGcc > 2:141950/1‑151 (MQ=255)
tgatCAACCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCACCGAGTCGTGCAGTTGAGACGACGc < 3:39946/150‑1 (MQ=255)
gatCAACCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCACCGAGTCGTGCAGTTGAGACGACGCCt < 1:1165162/151‑1 (MQ=255)
tCAGCCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCACCGAGTCGTGCAGTTGAGACGACGc < 1:325262/147‑1 (MQ=255)
cAACCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCAGCAAGCGGTTCTGCGGCACCGAGTCGTGCAGTTGAGACGACGCCTGcc > 1:1630958/1‑151 (MQ=255)
aaCCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCACCGAGTCGTGCAGTTGAGACGACGCCTGcct < 1:680517/151‑2 (MQ=255)
aaCCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCACCGAGTCGTGCAGTTGAGACGACGCCTGcc > 2:685167/1‑150 (MQ=255)
cccGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCACCGAGTCGTGCAGTTGAGACGACGCCTGCCAg < 1:1002534/150‑1 (MQ=255)
cccGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCACCGAGTCGTGCAGTTGAGACGACGCCTGCCAGa < 3:230466/151‑1 (MQ=255)
ccGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCACCGAGTCGTGCAGTTGAGACGACGCCTGCCAGAc > 2:457156/1‑151 (MQ=255)
cGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCACCGAGTCGTGCAGTTGAGACGACGCCTGCCAGAcc < 2:944288/151‑1 (MQ=255)
cAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCACCGAGTCGTGCAGTTGAGACGACGCCTGCCAGACCTGc > 1:1073883/1‑151 (MQ=255)
aaTCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCACCGAGTCGTGCAGTTGAGACGACGCCTGCCAGACCTGc > 3:294326/1‑150 (MQ=255)
tCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCACCGAGTCGTGCAGTTGAGACGACGCCTGCCAGACCTGcac > 2:249615/1‑150 (MQ=255)
tCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCACCGAGTCGTGCAGTTGAGACGACGCCTGCCAGACCTGcac > 2:1279794/1‑150 (MQ=255)
tCACCACAGAGAAAATGCGACCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGAGGTTCTGCGGCACCGAGTCGTGCAGTTGAGACGACGCCTGCCAGACCTGcac > 1:1002684/1‑150 (MQ=255)
caccacAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCACCGAGTCGTGCAGTTGAGACGACGCCTGCCAGACCTGcaca > 1:891645/1‑150 (MQ=255)
ccacAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCACCGAGTCGTGCAGTTGAGACGACGCCTGCCAGACCTGCACaaa < 2:1364006/150‑1 (MQ=255)
ccacAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCACCGAGTCGTGCAGTTGAGACGACGCCTGCCAGACCTGCACAAac < 2:883446/151‑1 (MQ=255)
ccacAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCACCGAGTCGTGCAGTTGAGACGACGCCTGCCAGACCTGCACAAac > 2:1102223/1‑151 (MQ=255)
cacaGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCACCGAGTCGTGCAGTTGAGACGACGCCTGCCAGACCTGCACaaa > 4:124181/1‑149 (MQ=255)
caGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCACCGAGTCGTGCAGTTGAGACGACGCCTGCCAGACCTGCACAAACAcc > 2:574385/1‑151 (MQ=255)
agagAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCACCGAGTCGTGCAGTTGAGACGACGCCTGCCAGACCTGCACAAACACCg < 1:688654/151‑1 (MQ=255)
gagaAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCACCGAGTCGTGCAGTTGAGACGACGCCTGCCAGACCTGCACAAACACCg < 1:1040360/150‑1 (MQ=255)
aaaTGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCACCGAGTCGTGCAGTTGAGACGACGCCTGCCAGACCTGCACAAACACCGgaga < 2:646719/150‑1 (MQ=255)
aaaTGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCACCGAGTCGTGCAGTTGAGACGACGCCTGCCAGACCTGCACAAACACCGGAgat < 1:307560/151‑1 (MQ=255)
tGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCACCGAGTCGTGCAGTTGAGACGACGCCTGCCAGACCTGCACAAACACCGGAgatgat > 1:813644/1‑151 (MQ=255)
tGCGCCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCACCGAGTCGTGCAGTTGAGACGACGCCTGCCAGACCTGCACAAACACCGGAgatgat > 4:346577/1‑151 (MQ=255)
tgcCCCTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCATTGGCATAGGTTTCAAAACCCATACCGGAAACCGGTTCGGCGGCACCGAGTCGTCCGGTTGGGACACCCCCGGCCAGACCGGCACAAACACCGACgatgaaa > 1:1266089/2‑148 (MQ=255)
ccccGTGCCGCCGAAGAAACTGGTGTCGCCTATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCACCGGGTCGTGCAGTTGATACGACGCCTGCCAGACCTGCACAAACACCGGAGATGATaaa < 1:1691176/150‑1 (MQ=255)
cccTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCACCGAGTCGTGCAGTTGAGACGACGCCTGCCAGACCTGCACAAACACCGGAGATGATAAac > 1:1097264/1‑150 (MQ=255)
ccTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCACCGAGTCGTGCAGTTGAGACGACGCCTGCCAGACCTGCACAAACACCGGAGATGATAAacac > 2:852673/1‑151 (MQ=255)
ccTTGCCGCCGAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCACCGAGTCGTGCAGTTGAGACGACGCCTGCCAGACCTGCACAAACACCGGAGATGATAAacac > 2:1525202/1‑151 (MQ=255)
ccgccgAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCACCGAGTCGTGCAGTTGAGACGACGCCTGCCAGACCTGCACAAACACCGGAGATGATAAACaccacc > 3:422675/1‑150 (MQ=255)
ccgccgAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCACCGAGTCGTGCAGTTGAGACGACGCCTGCCAGACCTGCACAAACACCGGAGATGATAAACAccacca < 3:83840/151‑1 (MQ=255)
ccgccgAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCACCGAGTCGTGCAGTTGAGACGACGCCTGCCAGACCTGCACAAACACCGGAGATGATAAACAccacca < 2:1737359/151‑1 (MQ=255)
cgccgAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCACCGAGTCGTGCAGTTGAGACGACGCCTGCCAGACCTGCACAAACACCGGAGATGATAAACACCACCAg < 4:520264/151‑1 (MQ=255)
cgccgAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCACCGAGTCGTGCAGTTGAGACGACGCCTGCCAGACCTGCACAAACACCGGAGATGATAAACACCACCAg < 1:29596/151‑1 (MQ=255)
tgaagaaACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCACCGAGTCGTGCAGTTGAGACGACGCCTGCCAGACCTGCACAAACACCGGAGATGATAAACACCACCAGGAt > 1:1102562/2‑151 (MQ=255)
cgAAGAAACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCACCGAGTCGTGCAGTTGAGACGACGCCTGCCAGACCTGCACAAACACCGGAGATGATAAACACCACCAGGa > 2:614812/1‑150 (MQ=255)
gaagaaACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCACCGAGTCGTGCAGTTGAGACGACGCCTGCCAGACCTGCACAAACACCGGAGATGATAAACACCACCAGGAtg < 2:500868/151‑1 (MQ=255)
aagaaACTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCACCGAGTCGTGCAGTTGAGACGACGCCTGCCAGACCTGCACAAACACCGGAGATGATAAACACCACCAGGAt > 1:535626/1‑149 (MQ=255)
aaaCTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCACCGAGTCGTGCAGTTGAGACGACGCCTGCCAGACCTGCACAAACACCGGAGATGATAAACACCACCAGGATGTgg < 1:1735849/150‑1 (MQ=255)
cTGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCACCGAGTCGTGCAGTTGAGACGACGCCTGCCAGACCTGCACAAACACCGGAGATGATAAACACCACCAGGATGTGGAAtt > 2:1480247/1‑151 (MQ=255)
tGGTGTCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCACCGAGTCGTGCAGTTGAGACGACGCCTGCCAGACCTGCACAAACACCGGAGATGATAAACACCACCAGGATGTGGAAttt > 2:1674266/1‑151 (MQ=255)
gtgtCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCACCGAGTCGTGCAGTTGAGACGACGCCTGCCAGACCTGCACAAACACCGGAGATGATAAACACCACCAGGATGTGGAATTTCa < 1:1697035/151‑1 (MQ=255)
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GACAGCCGCGATAATTAATCCGCCCATCACCACCAGTTGGTAATAGGTTTGTACCTGCAAAATATTCAGACCGTTGTTGATGG‑TGCCGATGATCAACCCGCCAATCACCACAGAGAAAATGCGCCCCTTGCCGCCGAAGAAACTGGTGCCGCCAATGATGGCGCTGGCAATGGCATAGGTTTCAAAACCCATACCGGCAAGCGGTTCTGCGGCACCGAGTCGTGCAGTTGAGACGACGCCTGCCAGACCTGCACAAACACCGGAGATGATAAACACCACCAGGATGTGGAATTTCA > NC_000913/4308516‑4308811
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
