Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F50 I1 R1
|
144 |
141.8 |
4677362 |
93.6% |
4378010 |
150.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,478,921 |
Δ1 bp |
intergenic (+32/+113) |
rraB → / ← yjgM |
protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,478,920 | 0 | C | . | 99.3%
| 710.7
/ ‑1.5
| 145 | intergenic (+31/+114) | rraB/yjgM | protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base . (67/77); total (68/77) |
| Fisher's exact test for biased strand distribution p-value = 4.69e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.33e-01 |
Only 100 of 148 total aligned reads displayed.
TGGCAGAGAAATTTGACGTTGAGTACGACGGATGGGGCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTTCCTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATC > NC_000913/4478771‑4479066
|
ggCAGAGAAATTTGACGTTGAGTACGACGGATGGGGCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTTc < 1:1626340/149‑1 (MQ=255)
agagAAATTTGACGTTGAGTACGACGGATGGGGCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCaa < 2:346904/151‑1 (MQ=255)
aaTTTGACGTTGAGTACGACGGATGGGGCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTgg > 1:1073357/1‑151 (MQ=255)
ttGACGTTGAGTACGACGGATGGGGCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTg > 1:151330/1‑150 (MQ=255)
gACGTTGAGTACGACGGATGGGGCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCCCTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGaa < 2:1395185/150‑1 (MQ=255)
gACGTTGAGTACGACGGATGGGGCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAAt > 3:112691/1‑151 (MQ=255)
aCGTTGAGTACGACGGATGGGGCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAAtt < 3:496208/151‑1 (MQ=255)
cGTTGAGTACGACGGATGGGGCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAAttt > 1:757995/1‑151 (MQ=255)
cGTTGAGTACGACGGATGGGGCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAAttt < 3:176812/151‑1 (MQ=255)
ttGAGTACGACGGATGGGGCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGt > 2:730590/1‑151 (MQ=255)
gAGTACGACGGATGGGGCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAg < 2:1183624/151‑1 (MQ=255)
tACGACGGATGGGGCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGccc > 2:1211959/1‑151 (MQ=255)
cgacgGATGGGGCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCgg > 1:776741/1‑151 (MQ=255)
cgacgGATGGGGCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCgg > 1:860226/1‑151 (MQ=255)
cgGATGGGGCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGAt < 2:1335315/150‑1 (MQ=255)
cgGATGGGGCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGAt > 2:1075711/1‑150 (MQ=255)
cgGATGGGGCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATa < 2:78965/151‑1 (MQ=255)
ggATGGGGCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATa > 3:404616/1‑150 (MQ=255)
aTGGGGCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAgg < 2:1284785/151‑1 (MQ=255)
ggggCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCa < 1:1111264/151‑1 (MQ=255)
gggCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCAt < 1:1076302/151‑1 (MQ=255)
cACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCa < 1:1565888/151‑1 (MQ=255)
acttacttTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCAt > 2:1321851/1‑151 (MQ=255)
acttacttTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCAt < 2:322444/151‑1 (MQ=255)
tacttTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTc > 1:823657/1‑151 (MQ=255)
cttTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGt < 2:1421480/148‑1 (MQ=255)
cttTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTcac > 2:40316/1‑151 (MQ=255)
ttGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTcaca < 4:404596/150‑1 (MQ=255)
ttGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTcac < 2:762246/149‑1 (MQ=255)
ttGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTcac < 2:1718627/149‑1 (MQ=255)
ttGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACAt > 3:520395/1‑151 (MQ=255)
tGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATc > 2:564841/1‑151 (MQ=255)
aaGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCg > 1:785972/1‑151 (MQ=255)
gATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGc > 2:1520838/1‑151 (MQ=255)
ccTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAACGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCAt > 1:1447381/1‑150 (MQ=255)
aaCGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATaaa < 2:1433799/150‑1 (MQ=255)
aaCGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATaaa < 1:268956/150‑1 (MQ=255)
aaCGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATaa < 1:1328158/149‑1 (MQ=255)
aCGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAACa < 1:515102/151‑1 (MQ=255)
cGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTg > 1:1159437/1‑107 (MQ=255)
cGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTg < 2:1159572/107‑1 (MQ=255)
cGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAac < 4:593066/151‑1 (MQ=255)
gAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAacg > 4:113300/1‑151 (MQ=255)
aGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAacgta < 2:1716676/151‑1 (MQ=255)
ggCGACGATGAAGATTTTGTCGATGAAGACGTTGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCTGCATAAACAAAacgtacgt < 1:961215/150‑1 (MQ=255)
cgacgaTGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACgttgt > 2:941228/1‑151 (MQ=255)
cgacgaTGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGACCAGGTAGTTCCTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACgttg > 1:816051/1‑151 (MQ=255)
ccacgaTGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAGCCTGGTGAAGTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACgttg < 1:1710160/148‑1 (MQ=255)
gacgaTGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACgttgtt < 2:190384/151‑1 (MQ=255)
cgaTGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTa > 1:1383347/1‑150 (MQ=255)
cgaTGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTa > 2:1385933/1‑150 (MQ=255)
gAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGtt < 1:1047088/151‑1 (MQ=255)
aaGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTc > 2:1374965/1‑151 (MQ=255)
aGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCg < 2:672379/151‑1 (MQ=255)
ttttGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGaa < 3:315669/150‑1 (MQ=255)
tttGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAAt < 3:349712/150‑1 (MQ=255)
ttGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATg < 4:249224/150‑1 (MQ=255)
gTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGccc > 3:475176/1‑151 (MQ=255)
cGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCcg < 1:1034970/150‑1 (MQ=255)
gATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCcgcg > 2:1146917/1‑151 (MQ=255)
gATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCcgcg > 1:1414352/1‑151 (MQ=255)
gATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCcgcg > 1:1716283/1‑151 (MQ=255)
gATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCcgcg > 2:775968/1‑151 (MQ=255)
gAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGt < 2:1528674/151‑1 (MQ=255)
aaGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGtt < 4:243799/151‑1 (MQ=255)
aaGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGtt > 1:996315/1‑151 (MQ=255)
gACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTg > 2:1093498/1‑150 (MQ=255)
gACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTg > 3:175644/1‑150 (MQ=255)
gATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAaca < 2:573410/151‑1 (MQ=255)
gATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAac > 1:750892/1‑150 (MQ=255)
aTGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAacac < 2:1654777/151‑1 (MQ=255)
aCGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACAcgcg < 2:1322783/151‑1 (MQ=255)
cGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCgg < 1:603227/151‑1 (MQ=255)
gAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGc < 1:1022758/151‑1 (MQ=255)
gTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCAt > 2:1101693/1‑151 (MQ=255)
cGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCAtttt > 1:924047/1‑151 (MQ=255)
accACTAATTAAGCGTAGCGCATCAGGACCAGGTAGTT‑CTGCAACCTGGTGAATTCGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCAtttt > 1:1165166/2‑150 (MQ=255)
ccACTAAGTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCAttt < 4:584829/148‑1 (MQ=255)
cACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCAttttttt < 2:758100/151‑1 (MQ=255)
aCTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCAttttttt > 4:308394/1‑150 (MQ=255)
aCTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCAttttttt > 1:119934/1‑150 (MQ=255)
aCTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTa < 3:204806/151‑1 (MQ=255)
cTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAGCCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTa < 2:1022547/150‑1 (MQ=255)
aaTTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTag > 3:368975/1‑149 (MQ=255)
aTTAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGt < 3:191346/151‑1 (MQ=255)
ttAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGtt > 2:654500/1‑151 (MQ=255)
ttAAGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGtt > 1:588113/1‑151 (MQ=255)
aGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTcgc < 1:1211816/151‑1 (MQ=255)
aGCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTcgc > 1:511646/1‑151 (MQ=255)
gCGTAGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTcgcg > 3:304590/1‑151 (MQ=255)
aGCGCATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAAc > 2:1732466/1‑151 (MQ=255)
cgcATCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACAt < 4:404728/151‑1 (MQ=255)
aTCAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGACCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGCTGAACACGCGAGACTTTTTTTAGAGTTCGCGCAACATCCg > 1:114205/1‑151 (MQ=255)
cAGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGc < 2:396827/150‑1 (MQ=255)
aGGCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCAc > 1:1730750/1‑151 (MQ=255)
gCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACtt < 1:1305696/151‑1 (MQ=255)
gCCCAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACtt < 2:1696560/151‑1 (MQ=255)
ccAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTca < 1:652146/151‑1 (MQ=255)
cAGGTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTcac > 2:790839/1‑151 (MQ=255)
gTAGTT‑CTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAAt > 2:828285/1‑151 (MQ=255)
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TGGCAGAGAAATTTGACGTTGAGTACGACGGATGGGGCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTTCCTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATC > NC_000913/4478771‑4479066
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
