Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F50 I3 R1 143 109.6 3434427 98.5% 3382910 150.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,903,631 T→C Q24R (CAG→CGG)  bglB ← cryptic phospho‑beta‑glucosidase B

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,903,6310TC98.3% 427.8 / ‑1.4 115Q24R (CAG→CGG) bglBcryptic phospho‑beta‑glucosidase B
Reads supporting (aligned to +/- strand):  ref base T (2/0);  new base C (57/56);  total (59/56)
Fisher's exact test for biased strand distribution p-value = 4.96e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.72e-01

Only 100 of 115 total aligned reads displayed.

CAAATAACGCGATATCTTCCGGGTAACGGTGATAAAAATCGATGGCGACATCTTTGATATTCTCTTTCCCCAGGATGCGCGGTTCCATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCTGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGTTTCTGGAAATGCTTTCATAATTAACTCCTTTTATCGTTAGCGAATGATGGATAACAGCGGTTCACCTGCGCTTATCTGCGCCGTGCCGTGGGGT  >  NC_000913/3903485‑3903777
                                                                                                                                                   |                                                                                                                                                  
cAAATAACGCGATATCTTCCGGGTAACGGTGATAAAAATCGATGGCGACATCTTTGATATTCTCTTTCCCCAGGATGCGCGGTTCCATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGcc                                                                                                                                                 >  2:678474/1‑150 (MQ=255)
cAAATAACGCGATATCTTCCGGGTAACGGTGATAAAAATCGATGGCGACATCTTTGATATTCTCTTTCCCCAGGATGCGCGGTTCCATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCa                                                                                                                                                <  1:810760/151‑1 (MQ=255)
 aaaTAACGCGATATCTTCCGGGTAACGGTGATAAAAATCGATGGCGACATCTTTGATATTCTCTTTCCCCAGGATGCGCGGTTCCATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGcc                                                                                                                                                 >  1:1175834/1‑149 (MQ=255)
 aaaTAACGCGATATCTTCCGGGTAACGGTGATAAAAATCGATGGCGACATCTTTGATATTCTCTTTCCCCAGGATGCGCGGTTCCATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCa                                                                                                                                                <  1:693789/150‑1 (MQ=255)
 aaaTAACGCGATATCTTCCGGGTAACGGTGATAAAAATCGATGGCGACATCTTTGATATTCTCTTTCCCCAGGATGCGCGGTTCCATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAg                                                                                                                                               <  2:1266691/151‑1 (MQ=255)
  aaTAACGCGATATCTTCCGGGTAACGGTGATAAAAATCGATGGCGACATCTTTGATATTCTCTTTCCCCAGGATGCGCGGTTCCATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAgg                                                                                                                                              >  1:435997/1‑151 (MQ=255)
   aTAACGCGATATCTTCCGGGTAACGGTGATAAAAATCGATGGCGACATCTTTGATATTCTCTTTCCCCAGGATGCGCGGTTCCATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGc                                                                                                                                             >  1:1259181/1‑151 (MQ=255)
   aTAACGCGATATCTTCCGGGTAACGGTGATAAAAATCGATGGCGACATCTTTGATATTCTCTTTCCCCAGGATGCGCGGTTCCATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGc                                                                                                                                             <  1:1609957/151‑1 (MQ=255)
        gcgATATCTTCCGGGTAACGGTGATAAAAATCGATGGCGACATCTTTGATATTCTCTTTCCCCAGGATGCGCGGTTCCATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCtt                                                                                                                                        >  2:1409187/1‑151 (MQ=255)
          gATATCTTCCGGGTAACGGTGATAAAAATCGATGGCGACATCTTTGATATTCTCTTTCCCCAGGATGCGCGGTTCCATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTcc                                                                                                                                      >  2:1076839/1‑151 (MQ=255)
           atatCTTCCGGGTAACGGTGATAAAAATCGATGGCGACATCTTTGATATTCTCTTTCCCCAGGATGCGCGGTTCCATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTcc                                                                                                                                      >  1:1024186/1‑150 (MQ=255)
            tatCTTCCGGGTAACGGTGATAAAAATCGATGGCGACATCTTTGATATTCTCTTTCCCCAGGATGCGCGGTTCCATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCAc                                                                                                                                    >  2:668769/1‑151 (MQ=255)
               cTTCCGGGTAACGGTGATAAAAATCGATGGCGACATCTTTGATATTCTCTTTCCCCAGGATGCGCGGTTCCATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTg                                                                                                                                 >  1:1473873/1‑151 (MQ=255)
                 tCCGGGTAACGGTGATAAAAATCGATGGCGACATCTTTGATATTCTCTTTCCCCAGGATGCGCGGTTCCATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTg                                                                                                                                 <  2:340563/149‑1 (MQ=255)
                  ccGGGTAACGGTGATAAAAATCGATGGCGACATCTTTGATATTCTCTTTCCCCAGGATGCGCGGTTCCATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGAtt                                                                                                                              <  2:69897/151‑1 (MQ=255)
                  ccGGGTAACGGTGATAAAAATCGATGGCGACATCTTTGATATTCTCTTTCCCCAGGATGCGCGGTTCCATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGAt                                                                                                                               <  1:1282704/150‑1 (MQ=255)
                    gggTAACGGTGATAAAAATCGATGGCGACATCTTTGATATTCTCTTTCCCCAGGATGCGCGGTTCCATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTgg                                                                                                                            <  2:625700/151‑1 (MQ=255)
                      gTAACGGTGATAAAAATCGATGGCGACATCTTTGATATTCTCTTTCCCCAGGATGCGCGGTTCCATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGc                                                                                                                           >  2:581887/1‑150 (MQ=255)
                       tAACGGTGATAAAAATCGATGGCGACATCTTTGATATTCTCTTTCCCCAGGATGCGCGGTTCCATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGc                                                                                                                           >  1:1685368/1‑149 (MQ=255)
                       tAACGGTGATAAAAATCGATGGCGACATCTTTGATATTCTCTTTCCCCAGGATGCGCGGTTCCATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCC‑TTGCCATCCTTCCCG‑CAGGCCCCTTCCACCTTAtttg                                                                                                                            >  2:938047/1‑145 (MQ=255)
                          cGGTGATAAAAATCGATGGCGACATCTTTGATATTCTCTTTCCCCAGGATGCGCGGTTCCATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTg                                                                                                                      <  1:777937/151‑1 (MQ=255)
                          cGGTGATAAAAATCGATGGCGACATCTTTGATATTCTCTTTCCCCAGGATGCGCGGTTCCATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTg                                                                                                                      <  1:1163290/151‑1 (MQ=255)
                            gTGATAAAAATCGATGGCGACATCTTTGATATTCTCTTTCCCCAGGATGCGCGGTTCCATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGtt                                                                                                                    <  2:131830/151‑1 (MQ=255)
                            gTGATAAAAATCGATGGCGACATCTTTGATATTCTCTTTCCCCAGGATGCGCGGTTCCATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGtt                                                                                                                    <  1:1158930/151‑1 (MQ=255)
                             tGATAAAAATCGATGGCGACATCTTTGATATTCTCTTTCCCCAGGATGCGCGGTTCCATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTg                                                                                                                   >  1:656971/1‑151 (MQ=255)
                              gATAAAAATCGATGGCGACATCTTTGATATTCTCTTTCCCCAGGATGCGCGGTTCCATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTg                                                                                                                   <  2:905989/150‑1 (MQ=255)
                               aTAAAAATCGATGGCGACATCTTTGATATTCTCTTTCCCCAGGATGCGCGGTTCCATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTgcg                                                                                                                 >  2:1665468/1‑151 (MQ=255)
                                  aaaaTCGATGGCGACATCTTTGATATTCTCTTTCCCCAGGATGCGCGGTTCCATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGcc                                                                                                               >  2:696447/1‑150 (MQ=255)
                                   aaaTCGATGGCGACATCTTTGATATTCTCTTTCCCCAGGATGCGCGGTTCCATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCAc                                                                                                             >  2:1552306/1‑151 (MQ=255)
                                   aaaTCGATGGCGACATCTTTGATATTCTCTTTCCCCAGGATGCGCGGTTCCATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCAc                                                                                                             >  1:703369/1‑151 (MQ=255)
                                       cGATGGCGACATCTTTGATATTCTCTTTCCCCAGGATGCGCGGTTCCATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCa                                                                                                         <  2:1670369/151‑1 (MQ=255)
                                           ggCGACATCTTTGATATTCTCTTTCCCCAGGATGCGCGGTTCCATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCaa                                                                                                        >  2:47178/1‑148 (MQ=255)
                                            gCGACATCTTTGATATTCTCTTTCCCCAGGATGCGCGGTTCCATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGaa                                                                                                    <  1:563547/151‑1 (MQ=255)
                                             cGACATCTTTGATATTCTCTTTCCCCAGGATGCGCGGTTCCATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGaa                                                                                                    >  1:877567/1‑150 (MQ=255)
                                               aCATCTTTGATATTCTCTTTCCCCAGGATGCGCGGTTCCATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATg                                                                                                 <  1:1409095/151‑1 (MQ=255)
                                                cATCTTTGATATTCTCTTTCCCCAGGATGCGCGGTTCCATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGt                                                                                                >  2:1255421/1‑151 (MQ=255)
                                                cATCTTTGATATTCTCTTTCCCCAGGATGCGCGGTTCCATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGt                                                                                                <  1:1608779/151‑1 (MQ=255)
                                                 aTCTTTGATATTCTCTTTCCCCAGGATGCGCGGTTCCATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGtt                                                                                               >  1:26394/1‑151 (MQ=255)
                                                   cTTTGATATTCTCTTTCCCCAGGATGCGCGGTTCCATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGTTTc                                                                                             >  1:180579/1‑151 (MQ=255)
                                                     ttGATATTCTCTTTCCCCAGGATGCGCGGTTCCATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGttt                                                                                              <  2:1460399/148‑1 (MQ=255)
                                                     ttGATATTCTCTTTCCCCAGGATGCGCGGTTCCATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGttt                                                                                              <  2:913243/148‑1 (MQ=255)
                                                       gATATTCTCTTTCCCCAGGATGCGCGGTTCCATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCGCCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGTTTCTgg                                                                                          <  1:366088/150‑1 (MQ=255)
                                                       gATATTCTCTTTCCCCAGGATGCGCGGTTCCATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGTTTCTGGa                                                                                         <  2:1425258/151‑1 (MQ=255)
                                                        atatTCTCTTTCCCCAGGATGCGCGGTTCCATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTTCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCGCCCCAAAGAAATGTTTCTGGaa                                                                                        <  1:476778/151‑1 (MQ=255)
                                                        atatTCTCTTTCCCCAGGATGCGCGGTTCCATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGTTTCTGGaa                                                                                        <  2:656692/151‑1 (MQ=255)
                                                         tatTCTCTTTCCCCAGGATGCGCGGTTCCATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGTTTCTGGaa                                                                                        >  2:424414/1‑150 (MQ=255)
                                                            tctcTTTCCCCAGGATGCGCGGTTCCATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGTTTCTGGAAATGc                                                                                    >  1:183647/1‑151 (MQ=255)
                                                               ctTTCCCCAGGATGCGCGGTTCCATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGTTTCTGGAAATGCt                                                                                   <  1:1185997/149‑1 (MQ=255)
                                                                  tCCCCAGGATGCGCGGTTCCATTTTTCCCATTACGCCATGGGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGTTTCTGGAAATGCTTTc                                                                                >  2:1264682/1‑149 (MQ=255)
                                                                   ccccAGGATGCGCGGTTCCATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGTTTCTGGAAATGCTTTCAt                                                                              >  1:993584/1‑150 (MQ=255)
                                                                   ccccAGGATGCGCGGTTCCATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGTTTCTGGAAATGCTTTCATa                                                                             <  2:352781/151‑1 (MQ=255)
                                                                    cccAGGATGCGCGGTTCCATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCCGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACACCAAAGAAATGTTTCTGGAAATGCTTTCATa                                                                             >  2:1384299/1‑150 (MQ=255)
                                                                    cccAGGATGCGCGGTTCCATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGTTTCTGGAAATGCTTTCATa                                                                             >  1:1081271/1‑150 (MQ=255)
                                                                     ccAGGATGCGCGGTTCCATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGTTTCTGGAAATGCTTTCATAAt                                                                           <  1:445528/151‑1 (MQ=255)
                                                                          aTGCGCGGTTCCATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGTTTCTGGAAATGCTTTCATAATTAACt                                                                      <  2:1319493/151‑1 (MQ=255)
                                                                          aTGCGCGGTTCCATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGTTTCTGGAAATGCTTTCATAATTAACt                                                                      >  1:1496408/1‑151 (MQ=255)
                                                                               cgGTTCCATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGTTTCTGGAAATGCTTTCATAATTAACTCCttt                                                                 >  2:584756/1‑151 (MQ=255)
                                                                               cgGTTCCATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGTTTCTGGAAATGCTTTCATAATTAACTCCttt                                                                 <  1:678416/151‑1 (MQ=255)
                                                                                    ccATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGTTTCTGGAAATGCTTTCATAATTAACTCCTTTTATCg                                                            >  2:203665/1‑151 (MQ=255)
                                                                                    ccATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGTTTCTGGAAATGCTTTCATAATTAACTCCTTTTATCg                                                            <  2:1018386/151‑1 (MQ=255)
                                                                                    ccATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGTTTCTGGAAATGCTTTCATAATTAACTCCTTTTATCg                                                            >  1:1112262/1‑151 (MQ=255)
                                                                                     cATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGTTTCTGGAAATGCTTTCATAATTAACTCCTTTTATCGt                                                           >  2:832697/1‑151 (MQ=255)
                                                                                     cATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGTTTCTGGAAATGCTTTCATAATTAACTCCTTTTATCGt                                                           >  1:1502126/1‑151 (MQ=255)
                                                                                      aTTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGTTTCTGGAAATGCTTTCATAATTAACTCCTTTTATCGtt                                                          >  1:514269/1‑151 (MQ=255)
                                                                                       tttttCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGTTTCTGGAAATGCTTTCATAATTAACTCCTTTTATCGtt                                                          >  2:1396963/1‑150 (MQ=255)
                                                                                          ttCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGTTTCTGGAAATGCTTTCATAATTAACTCCTTTTATCGTTAGc                                                       <  2:1318105/150‑1 (MQ=255)
                                                                                            cccATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGTTTCTGGAAATGCTTTCATAATTAACTCCTTTTATCGTTAGCGaa                                                    <  1:64859/151‑1 (MQ=255)
                                                                                            cccATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGTTTCTGGAAATGCTTTCATAATTAACTCCTTTTATCGTTAGCGa                                                     >  2:640276/1‑150 (MQ=255)
                                                                                              cATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGTTTCTGGAAATGCTTTCATAATTAACTCCTTTTATCGTTAGCGAatg                                                  >  2:861929/1‑151 (MQ=255)
                                                                                               aTTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGTTTCTGGAAATGCTTTCATAATTAACTCCTTTTATCGTTAGCGAatga                                                 <  2:389583/151‑1 (MQ=255)
                                                                                                 tACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGTTTCTGGAAATGCTTTCATAATTAACTCCTTTTATCGTTAGCGAatgatg                                               >  2:1274095/1‑151 (MQ=255)
                                                                                                      cATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGTTTCTGGAAATGCTTTCATAATTAACTCCTTTTATCGTTAGCGAATGATGGATaa                                          <  2:1218571/151‑1 (MQ=255)
                                                                                                      cATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGTTTCTGGAAATGCTTTCATAATTAACTCCTTTTATCGTTAGCGAATGATGGATa                                           >  1:1616735/1‑150 (MQ=255)
                                                                                                      cATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGTTTCTGGAAATGCTTTCATAATTAACTCCTTTTATCGTTAGCGAATGATGGATa                                           >  1:1345474/1‑150 (MQ=255)
                                                                                                        tGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGTTTCTGGAAATGCTTTCATAATTAACTCCTTTTATCGTTAGCGAATGATGGATAAc                                         >  2:1677874/1‑150 (MQ=255)
                                                                                                        tGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGTTTCTGGAAATGCTTTCATAATTAACTCCTTTTATCGTTAGCGAATGATGGATAAc                                         >  2:244967/1‑150 (MQ=255)
                                                                                                        tGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGTTTCTGGAAATGCTTTCATAATTAACTCCTTTTATCGTTAGCGAATGATGGATAAc                                         >  1:913277/1‑150 (MQ=255)
                                                                                                          aGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGTTTCTGGAAATGCTTTCATAATTAACTCCTTTTATCGTTAGCGAATGATGGATAACAGc                                      <  2:1166706/151‑1 (MQ=255)
                                                                                                           ggCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGTTTCTGGAAATGCTTTCATAATTAACTCCTTTTATCGTTAGCGAATGATGGATAACAGCg                                     <  1:1076753/151‑1 (MQ=255)
                                                                                                             cTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGTTTCTGGAAATGCTTTCATAATTAACTCCTTTTATCGTTAGCGAATGATGGATAACAGCGGt                                   >  1:463299/1‑151 (MQ=255)
                                                                                                              tGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGTTTCTGGAAATGCTTTCATAATTAACTCCTTTTATCGTTAGCGAATGATGGATAACAGCGGtt                                  >  1:798868/1‑151 (MQ=255)
                                                                                                               gTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGTTTCTGGAAATGCTTTCATAATTAACTCCTTTTATCGTTAGCGAATGATGGATAACAGCGGt                                   <  1:1589220/149‑1 (MQ=255)
                                                                                                               gTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGTTTCTGGAAATGCTTTCATAATTAACTCCTTTTATCGTTAGCGAATGATGGATAACAGCGGTTc                                 <  1:1552210/151‑1 (MQ=255)
                                                                                                                tAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGTTTCTGGAAATGCTTTCATAATTAACTCCTTTTATCGTTAGCGAATGATGGATAACAGCGGTTc                                 >  2:508735/1‑150 (MQ=255)
                                                                                                                 aaaTCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGTTTCTGGAAATGCTTTCATAATTAACTCCTTTTATCGTTAGCGAATGATGGATAACAGCGGTTCa                                <  1:1380920/150‑1 (MQ=255)
                                                                                                                        aGGTCGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGTTTCTGGAAATGCTTTCATAATTAACTCCTTTTATCGTTAGCGAATGATGGATAACAGCGGTTCACCTGCGCt                        <  1:584699/151‑1 (MQ=255)
                                                                                                                            cGAGATCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGTTTCTGGAAATGCTTTCATAATTAACTCCTTTTATCGTTAGCGAATGATGGATAACAGCGGTTCACCTGCGCTTAt                     <  2:1556116/150‑1 (MQ=255)
                                                                                                                                aTCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGTTTCTGGAAATGCTTTCATAATTAACTCCTTTTATCGTTAGCGAATGATGGATAACAGCGGTTCACCTGCGCTTATCTgcg                <  1:1563464/151‑1 (MQ=255)
                                                                                                                                 tCCCTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGTTTCTGGAAATGCTTTCATAATTAACTCCTTTTATCGTTAGCGAATGATGGATAACAGCGGTTCACCTGCGCTTATCTgcgc               >  1:676672/1‑151 (MQ=255)
                                                                                                                                   ccTTTGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGTTTCTGGAAATGCTTTCATAATTAACTCCTTTTATCGTTAGCGAATGATGGATAACAGCGGTTCACCTGCGCTTATCTGCgccg             <  2:1260577/151‑1 (MQ=255)
                                                                                                                                     tttGCCAT‑CTTCCTGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGTTTCTGGAAATGCTTTCATAATTAACTCCTTTTATCGTTAGCGAATGATGGATAACAGCGGTTCACCTGCGCTTATCTGCgccgtg           >  1:1148589/1‑151 (MQ=255)
                                                                                                                                     tttGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGTTTCTGGAAATGCTTTCATAATTAACTCCTTTTATCGTTAGCGAATGATGGATAACAGCGGTTCACCTGCGCTTATCTGCgccgtg           >  2:1152544/1‑151 (MQ=255)
                                                                                                                                      ttGCCAT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGTTTCTGGAAATGCTTTCATAATTAACTCCTTTTATCGTTAGCGAATGATGGATAACAGCGGTTCACCTGCGCTTATCTGCgccgtg           >  2:479405/1‑150 (MQ=255)
                                                                                                                                           aT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGTTTCTGGAAATGCTTTCATAATTAACTCCTTTTATCGTTAGCGAATGATGGATAACAGCGGTTCACCTGCGCTTATCTGCGccgtgccgtg      <  2:801341/150‑1 (MQ=255)
                                                                                                                                           aT‑CTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGTTTCTGGAAATGCTTTCATAATTAACTCCTTTTATCGTTAGCGAATGATGGATAACAGCGGTTCACCTGCGCTTATCTGCGCCGTGCCGTgg     >  2:1253237/1‑151 (MQ=255)
                                                                                                                                              cTTCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGTTTCTGGAAATGCTTTCATAATTAACTCCTTTTATCGTTAGCGAATGATGGATAACAGCGGTTCACCTGCGCTTATCTGCGCCGTGCCGTgggg   >  2:460575/1‑151 (MQ=255)
                                                                                                                                               ttCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGTTTCTGGAAATGCTTTCATAATTAACTCCTTTTATCGTTAGCGAATGATGGATAACAGCGGTTCACCTGCGCTTATCTGCGCCGTGCCGTGGGGt  >  2:1599444/1‑151 (MQ=255)
                                                                                                                                                tCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGTTTCTGGAAATGCTTTCATAATTAACTCCTTTTATCGTTAGCGAATGATGGATAACAGCGGTTCCCCTGCGCTTATCTGCGCCGTGCCGTggg    <  2:1008778/148‑1 (MQ=255)
                                                                                                                                                tCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGTTTCTGGAAATGCTTTCATAATTAACTCCTTTTATCGTTAGCGAATGATGGATAACAGCGGTTCACCTGCGCTTATCTGCGCCGTGCCGTgggg   <  1:1235376/149‑1 (MQ=255)
                                                                                                                                                tCCCGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGTTTCTGGAAATGCTTTCATAATTAACTCCTTTTATCGTTAGCGAATGATGGATAACAGCGGTTCACCTGCGCTTATCTGCGCCGTGCCGTGGGGt  <  2:877635/150‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                  
CAAATAACGCGATATCTTCCGGGTAACGGTGATAAAAATCGATGGCGACATCTTTGATATTCTCTTTCCCCAGGATGCGCGGTTCCATTTTTCCCATTACGCCATGAGGCTGTAAATCTGAGGTCGAGATCCCTTTGCCAT‑CTTCCTGCCAGGCACCTTCCACCTGATTGGCAGCTGTTGCGCCACCCCAAAGAAATGTTTCTGGAAATGCTTTCATAATTAACTCCTTTTATCGTTAGCGAATGATGGATAACAGCGGTTCACCTGCGCTTATCTGCGCCGTGCCGTGGGGT  >  NC_000913/3903485‑3903777

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A