Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F50 I3 R1
|
143 |
109.6 |
3434427 |
98.5% |
3382910 |
150.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,625,906 |
T→C |
intergenic (+43/‑6) |
serB → / → radA |
3‑phosphoserine phosphatase/DNA repair protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,625,906 | 0 | T | C | 99.1%
| 373.5
/ ‑4.1
| 105 | intergenic (+43/‑6) | serB/radA | 3‑phosphoserine phosphatase/DNA repair protein |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (57/47); total (57/48) |
| Fisher's exact test for biased strand distribution p-value = 4.57e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.92e-01 |
Only 100 of 105 total aligned reads displayed.
CCATGCCAAGCCAAAAGTGAATGAAAAGGCGGAAGTCACCATCCGTCACGCTGACCTGATGGGGGTATTCTGCATCCTCTCAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGCAGGGGCAGTGCAGTGCCTGTCATGCCTGGAACACCATCACCGAGGTGCGTCTTGCTGCGTCGCCAATGGTGGCGCGT > NC_000913/4625761‑4626052
|
ccATGCCAAGCCAAAAGTGAATGAAAAGGCGGAAGTCACCATCCGTCACGCTGACCTGATGGGGGTATTCTGCATCCTCTCAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACAcc > 2:1003178/1‑151 (MQ=255)
cATGCCAAGCCAAAAGTGAATGAAAAGGCGGAAGTCACCATCCGTCACGCTGACCTGATGGGGGTATTCTGCATCCTCTCAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCg > 2:638076/1‑151 (MQ=255)
aTGCCAAGCCAAAAGTGAATGAAAAGGCGGAAGTCACCATCCGTCACGCTGACCTGATGGGGGTATTCTGCATCCTCTCAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGt > 2:1542115/1‑151 (MQ=255)
aTGCCAAGCCAAAAGTGAATGAAAAGGCGGAAGTCACCATCCGTCACGCTGACCTGATGGGGGTATTCTGCATCCTCTCAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGt < 1:114542/151‑1 (MQ=255)
gccaagccaaAAGTGAATGAAAAGGCGGAAGTCACCATCCGTCACGCTGACCTGATGGGGGTATTCTGCATCCTCTCAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTgg < 1:1711251/151‑1 (MQ=255)
caagccaaAAGTGAATGAAAAGGCGGAAGTCACCATCCGTCACGCTGACCTGATGGGGGTATTCTGCATCCTCTCAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGc > 1:275111/1‑150 (MQ=255)
caagccaaAAGTGAATGAAAAGGCGGAAGTCACCATCCGTCACGCTGACCTGATGGGGGTATTCTGCATCCTCTCAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGc > 2:1048315/1‑150 (MQ=255)
caagccaaAAGTGAATGAAAAGCCGGAAGTCACCATCCGTCACGCTGACCTGATGGGGGTATTCTGCATCCTCTCAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCa < 2:276997/151‑1 (MQ=255)
aagccaaAAGTGAATGAAAAGGCGGAAGTCACCATCCGTCACGCTGACCTGATGGGGGTATTCTGCATCCTCTCAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCa > 2:1165148/1‑150 (MQ=255)
agccaaAAGTGAATGAAAAGGCGGAAGTCACCATCCGTCACGCTGACCTGATGGGGGTATTCTGCATCCTCTCAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCaaa < 2:141687/151‑1 (MQ=255)
agccaaAAGTGAATGAAAAGGCGGAAGTCACCATCCGTCACGCTGACCTGATGGGGGTATTCTGCATCCTCTCAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCaa > 1:292520/1‑150 (MQ=255)
aaaGTGAATGAAAAGGCGGAAGTCACCATCCGTCACGCTGACCTGATGGGGGTATTCTGCATCCTCTCAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTc < 2:38817/151‑1 (MQ=255)
gTGAATGAAAAGGCGGAAGTCACCATCCGTCACGCTGACCTGATGGGGGTATTCTGCATCCTCTCAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCaa < 2:373990/151‑1 (MQ=255)
gaatgaaAAGGCGGAAGTCACCATCCGTCACGCTGACCTGATGGGGGAATTCTGCATCCTCTCAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCa > 1:540324/1‑148 (MQ=255)
aatgaaAAGGCGGAAGTCACCATCCGTCACGCTGACCTGATGGGGGTATTCTGCATCCTCTCAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCaaaa > 1:656563/1‑150 (MQ=255)
gaaAAGGCGGAAGTCACCATCCGTCACGCTGACCTGATGGGGGTATTCTGCATCCTCTCAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAAcgcg > 2:1500537/1‑151 (MQ=255)
gaaAAGGCGGAAGTCACCATCCGTCACGCTGACCTGATGGGGGTATTCTGCATCCTCTCAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAAcgc < 1:1382843/150‑1 (MQ=255)
aaaaGGCGGAAGTCACCATCCGTCACGCTGACCTGATGGGGGTATTCTGCATCCTCTCAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACgcgc < 2:1264744/151‑1 (MQ=255)
aaaaGGCGGAAGTCACCATCCGTCACGCTGACCTGATGGGGGTATTCTGCATCCTCTCAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACgcgc > 2:619816/1‑151 (MQ=255)
ggCGGAAGTCACCATCCGTCACGCTGACCTGATGGGGGTATTCTGCATCCTCTCAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCttt < 1:748717/151‑1 (MQ=255)
gCGGAAGTCACCATCCGTCACGCTGACCTGATGGGGGTATTCTGCATCCTCTCAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCtttg < 2:1340350/151‑1 (MQ=255)
cGGAAGTCACCATCCGTCACGCTGACCTGATGGGGGTATTCTGCATCCTCTCAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCtttgt > 1:1342204/1‑151 (MQ=255)
cGGAAGTCACCATCCGTCACGCTGACCTGATGGGGGTATTCTGCATCCTCTCAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCtttgt > 1:277620/1‑151 (MQ=255)
ggAAGTCACCATCCGTCACGCTGACCTGATGGGGGTATTCTGCATCCTCTCAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCtttgtt < 2:221892/151‑1 (MQ=255)
ggAAGTCACCATCCGTCACGCTGACCTGATGGGGGTATTCTGCATCCTCTCAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCtttgt < 1:1252292/150‑1 (MQ=255)
gTCACCATCCGTCACGCTGACCTGATGGGGGTATTCTGCATCCTCTCAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTttgtttgt > 1:420336/1‑150 (MQ=255)
gTCACCATCCGTCACGCTGACCTGATGGGGGTATTCTGCATCCTCTCAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTttgtttgt > 2:309081/1‑150 (MQ=255)
cACCATCCGTCACGCTGACCTGATGGGGGTATTCTGCATCCTCTCAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTaat > 2:223460/1‑151 (MQ=255)
aCCATCCGTCACGCTGACCTGATGGGGGTATTCTGCATCCTCTCAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTaatg > 2:811290/1‑151 (MQ=255)
aCCATCCGTCACGCTGACCTGATGGGGGTATTCTGCATCCTCTCAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTaatg < 2:1476501/151‑1 (MQ=255)
ccGTCACGCTGACCTGATGGGGGTATTCTGCATCCTCTCAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGACACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTaatgaatg < 1:572656/150‑1 (MQ=255)
cGTCACGCTGACCTGATGGGGGTATTCTGCATCCTCTCAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCg > 1:725024/1‑151 (MQ=255)
cACGCTGACCTGATGGGGGTATTCTGCATCCTCTCAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCgggg > 2:1546984/1‑151 (MQ=255)
cACGCTGACCTGATGGGGGTATTCTGCATCCTCTCAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCgggg < 1:370620/151‑1 (MQ=255)
aCGCTGACCTGATGGGGGTATTCTGCATCCTCTCAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGc < 1:1128327/151‑1 (MQ=255)
gCTGACCTGATGGGGGTATTCTGCATCCTCTCAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCg > 1:780567/1‑151 (MQ=255)
gACCTGATGGGGGTATTCTGCATCCTCTCAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGa < 1:630269/149‑1 (MQ=255)
gACCTGATGGGGGTATTCTGCATCCTCTCAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGAtt < 1:91392/151‑1 (MQ=255)
cTGATGGGGGTATTCTGCATCCTCTCAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATc > 2:1149914/1‑151 (MQ=255)
tGATGGGGGTATTCTGCATCCTCTCAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATcc > 1:1281698/1‑151 (MQ=255)
tGATGGGGGTATTCTGCATCCTCTCAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATcc > 1:456404/1‑151 (MQ=255)
gATGGGGGTATTCTGCATCCTCTCAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATcca < 1:941613/151‑2 (MQ=255)
tGGGGGTATTCTGCATCCTCTCAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCcgcg > 2:630835/1‑151 (MQ=255)
ggggTATTCTGCATCCTCTCAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCt < 2:1189914/151‑1 (MQ=255)
gggTATTCTGCATCCTCTCAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTg < 1:982265/151‑1 (MQ=255)
ggTATTCTGCATCCTCTCAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTgg > 2:1615065/1‑151 (MQ=255)
gTATTCTGCATCCTCTCAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGc < 1:1500438/151‑1 (MQ=255)
gTATTCTGCATCCTCTCAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGc > 2:1388567/1‑151 (MQ=255)
cTGCATCCTCTCAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGCAgggg > 2:612889/1‑151 (MQ=255)
tGCATCCTCTCAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGCAGGGgc > 2:1629736/1‑151 (MQ=255)
gCATCCTCTCAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGCAggg < 1:892916/148‑1 (MQ=255)
gCATCCTCTCAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGCAGGGgc > 2:1546194/1‑150 (MQ=255)
cATCCTCTCAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGCAGGGgcag < 2:725529/151‑1 (MQ=255)
cATCCTCTCAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGCAGGGgc > 2:342743/1‑149 (MQ=255)
cATCCTCTCAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGCAGGGgc > 1:1287846/1‑149 (MQ=255)
aTCCTCTCAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGCAGGGgcagt > 1:978081/1‑151 (MQ=255)
aTCCTCTCAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGCAGGGgcagt < 2:1334972/151‑1 (MQ=255)
tCCTCTCAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGCAGGGgcagtg > 1:1329158/1‑151 (MQ=255)
tctcAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGCAGGGgcagtgc > 2:456529/1‑149 (MQ=255)
aGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGCAGGGGCAGTGCAGTGcc > 2:1207699/1‑151 (MQ=255)
aGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGCAGGGGCAGTGCAGTGcc > 1:106908/1‑151 (MQ=255)
cAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGCAGGGGCAGTGCAGTGCCTGt > 2:1210229/1‑151 (MQ=255)
aGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGCAGGGGCAGTGCAGTGCCTGt < 1:1048236/150‑1 (MQ=255)
ccTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGCAGGGGCAGTGCAGTGCCTGTCAt < 2:846496/151‑1 (MQ=255)
tGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGCAGGGGCAGTGCAGTGCCTGTCATGc > 1:983714/1‑151 (MQ=255)
gAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGCAGGGGCAGTGCAGTGCCTGTCAt < 2:823/148‑1 (MQ=255)
gAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGCAGGGGCAGTGCAGTGCCTGTCATg < 1:1313474/149‑1 (MQ=255)
tCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGCAGGGGCAGTGCAGTGCCTGTCATGCCTgg > 1:1429200/1‑151 (MQ=255)
aGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGCAGGGGCAGTGCAGTGCCTGTCATGCCTGGa > 1:1245536/1‑150 (MQ=255)
aGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGCAGGGGCAGTGCAGTGCCTGTCATGCCTGGa > 1:914456/1‑150 (MQ=255)
gAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGCAGGGGCAGTGCAGTGCCTGTCATGCCTGGAac < 1:983754/151‑1 (MQ=255)
aGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGCAGGGGCAGTGCAGTGCCTGTCATGCCTGGAacac > 2:868089/1‑151 (MQ=255)
aaTTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGCAGGGGCAGTGCAGTGCCTGTCATGCCTGGAACACCa < 1:1003103/150‑1 (MQ=255)
aaTTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGCAGGGGCAGTGCAGTGCCTGTCATGCCTGGAACACCa < 1:706360/150‑1 (MQ=255)
tGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGCAGGGGCAGTGCAGTGCCTGTCATGCCTGGAACACCATCa < 1:1223465/150‑1 (MQ=255)
gCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGCAGGGGCAGTGCAGTGCCTGTCATGCCTGGAACACCATCAcc > 1:552549/1‑151 (MQ=255)
gCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGCAGGGGCAGTGCAGTGCCTGTCATGCCTGGAACACCATCAcc < 1:261250/151‑1 (MQ=255)
cTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGCAGGGGCAGTGCAGTGCCTGTCATGCCTGGAACACCATCACCg > 2:1551087/1‑151 (MQ=255)
cgcccgccATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGCAGGGGCAGTGCAGTGCCTGTCATGCCTGGAACACCATCACCg < 2:656622/149‑1 (MQ=255)
cgcccgccATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGCAGGGGCAGTGCAGTGCCTGTCATGCCTGGAACACCATCACCg > 1:150989/1‑149 (MQ=255)
cgcccgccATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGCAGGGGCAGTGCAGTGCCTGTCATGCCTGGAACACCATCACCGa < 1:638018/150‑1 (MQ=255)
cccgccATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGCAGGGGCAGTGCAGTGCCTGTCATGCCTGGAACACCATCACCGAgg > 2:1566797/1‑150 (MQ=255)
ccgccATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGCAGGGGCAGTGCAGTGCCTGTCATGCCTGGAACACCATCACCGAGGTg > 2:1683666/1‑151 (MQ=255)
cgccATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGCAGGGGCAGTGCAGTGCCTGTCATGCCTGGAACACCATCACCGAGGTGc < 2:1311055/151‑1 (MQ=255)
gccATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGCAGGGGCAGTGCAGTGCCTGTCATGCCTGGAACACCATCACCGAGGTGCg > 2:165577/1‑151 (MQ=255)
gccATCCTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGCAGGGGCAGTGCAGTGCCTGTCATGCCTGGAACACCATCACCGAGGTGCg < 1:1338580/151‑1 (MQ=255)
ccTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGCAGGGGCAGTGCAGTGCCTGTCATGCCTGGAACACCATCACCGAGGTGCGTCTtg < 2:820606/151‑1 (MQ=255)
cTGCGGGCGGCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGCAGGGGCAGTGCAGTGCCTGTCATGCCTGGAACACCATCACCGAGGTGCGTCTtgc > 2:1679646/1‑151 (MQ=255)
gcgggcggCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAATGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGCAGGGGCAGTGCAGTGCCTGTCATGCCTGGAACACCATCACCGAGGTGCGTCTtgctg > 2:1299224/1‑151 (MQ=255)
gcgggcggCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGCAGGGGCAGTGCAGTGCCTGTCATGCCTGGAACACCATCACCGAGGTGCGTCTtgctg < 1:1042918/151‑1 (MQ=255)
gcgggcggCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGCAGGCGCAGTGCAGTGCATGTCATGCCTGGAACACCATCACCGAGGAGCGTCTtgctg > 1:97867/1‑151 (MQ=255)
cgggcggCACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGCAGGGGCAGTGCAGTGCCTGTCATGCCTGGAACACCATCACCGAGGTGCGTCTtgctg > 1:369726/1‑150 (MQ=255)
ggcggcACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGCAGGGGCAGTGCAGTGCCTGTCATGCCTGGAACACCATCACCGAGGTGCGTCTTGCTGCGt < 2:1310209/151‑1 (MQ=255)
ggcggcACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGGTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGCAGGGGCAGTGCAGTGCCTGTCATGCCTGGAACACCATCACCGAGGTGCGTCTTGCTGCGt < 1:975601/151‑1 (MQ=255)
gcggcACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGCAGGGGCAGTGCAGTGCCTGTCATGCCTGGAACACCATCACCGAGGTGCGTCTTGCTGCGTc < 1:1701697/151‑1 (MQ=255)
gcggcACAGCATTAACGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGCAGGGGCAGTGCAGTGCCTGTCATGCCTGGAACACCATCACCGAGGTGCGTCTTGCTGCGTc < 1:1396568/151‑1 (MQ=255)
aaCGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGCAGGGGCAGTGCAGTGCCTGTCATGCCTGGAACACCATCACCGAGGTGCGTCTTGCTGCGTCGCCAATGGTGgc < 2:1654641/150‑1 (MQ=255)
cGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGCAGGGGCAGTGCAGTGCCTGTCATGCCTGGAACACCATCACCGAGGTGCGTCTTGCTGCGTCGCCAATGGTGGcgcg > 1:1605853/1‑151 (MQ=255)
cGAGGCACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGCAGGGGCAGTGCAGTGCCTGTCATGCCTGGAACACCATCACCGAGGTGCGTCTTGCTGCGTCGCCAATGGTGGcgcg > 2:1403428/1‑151 (MQ=255)
aGGCACACCGTGGGAAAAGCTCCAAATCGCGCCTTTGTTTGTAATGAATGCGGGGCAGATTATCCGCGCTGGCAGGGGCAGTGCAGTGCCTGTCATGCCTGGAACACCATCACCGAGGTGCGTCTTGCTGCGTCGCCAATGGTGGCGCGt < 2:74623/150‑1 (MQ=255)
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CCATGCCAAGCCAAAAGTGAATGAAAAGGCGGAAGTCACCATCCGTCACGCTGACCTGATGGGGGTATTCTGCATCCTCTCAGGCAGCCTGAATCAGAAGTAATTGCTCGCCCGCCATCCTGCGGGCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGCAGGGGCAGTGCAGTGCCTGTCATGCCTGGAACACCATCACCGAGGTGCGTCTTGCTGCGTCGCCAATGGTGGCGCGT > NC_000913/4625761‑4626052
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
