Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F50 I1 R1 141 76.7 2402765 98.4% 2364320 150.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,428,720 T→C intergenic (‑3/‑215) ytfB ← / → fklB OapA family protein/FKBP‑type peptidyl‑prolyl cis‑trans isomerase (rotamase)

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,428,7200TC100.0% 248.0 / NA 70intergenic (‑3/‑215)ytfB/fklBOapA family protein/FKBP‑type peptidyl‑prolyl cis‑trans isomerase (rotamase)
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (29/41);  total (29/41)

GGAAGCAGAAATCCGACCACCAATACAATGGCGGCAATAATGATCCCCCGACGATGCATCGGCGGCAGCGGGTCCATGAAGCGAAAATTGTCCGGCGCGTGCCAGACTTTCTCCAGGGTTGGTTTTAGTTCAAAGCGCCCGGGCATGGTTTCCTCCTGCTCCGCGTCTTGTTCCTCAATCATAGCCTATGAATAAGCTAACGCTATGATGTCCGTGGTAAACCCGCCTTTATTATATTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGC  >  NC_000913/4428572‑4428863
                                                                                                                                                    |                                                                                                                                               
ggAAGCAGAAATCCGACCACCAATACAATGGCGGCAATAATGATCCCCCGACGATGCATCGGCGGCAGCGGGTCCATGAAGCGAAAATTGTCCGGCGCGTGCCAGACTTTCTCCAGGGTTGGTTTTAGTTCAAAGCGCCCGGGCATGGctt                                                                                                                                               >  1:265135/1‑151 (MQ=255)
  aaGCAGAAATCCGACCACCAATACAATGGCGGCAATAATGATCCCCCGACGATGCATCGGCGGCAGCGGGTCCATGAAGCGAAAATTGTCCGGCGCGTGCCAGACTTTCTCCAGGGTTGGTTTTAGTTCAAAGCGCCCGGGCATGGCTtcc                                                                                                                                             >  2:13249/1‑151 (MQ=255)
   aGCAGAAATCCGACCACCAATACAATGGCGGCAATAATGATCCCCCGACGATGCATCGGCGGCAGCGGGTCCATGAAGCGAAAATTGTCCGGCGCGTGCCAGACTTTCTCCAGGGTTGGTTTTAGTTCAAAGCGCCCGGGCATGGCTtcct                                                                                                                                            <  1:933388/151‑1 (MQ=255)
     cAGAAATCCGACCACCAATACAATGGCGGCAATAATGATCCCCCGACGATGCATCGGCGGCAGCGGGTCCATGAAGCGAAAATTGTCCGGCGCGTGCCAGACTTTCTCCAGGGTTGGTTTTAGTTCAAAGCGCCCGGGCATGGCTtcctcc                                                                                                                                          >  1:1185820/1‑151 (MQ=255)
      aGAAATCC‑ACCACCAATACAATGGCGGCAATAATGATCCCCCGACGATGCATCGGCGGCAGCGGGTCCCTGAAACGAAAAATTTCCGGCGCGGGCCCGGCTTTTTCCCGGGGTGGGTTTTGGTTAAAACGCCCGGGCCAGGCTtcctcc                                                                                                                                          >  1:188056/1‑149 (MQ=255)
       gAAATCCGACCACCAATACAATGGCGGCAATAATGATCCCCCGACGATGCATCGGCGGCAGCGGGTCCATGAAGCGAAAATTGTCCGGCGCGTGCCAGACTTTCTCCAGGGTTGGTTTTAGTTCAAAGCGCCCGGGCATGGCTTcctcct                                                                                                                                         <  1:1017703/150‑1 (MQ=255)
       gAAATCCGACCACCAATACAATGGCGGCAATAATGATCCCCCGACGATGCATCGGCGGCAGCGGGTCCATGAAGCGAAAATTGTCCGGCGCGTGCCAGACTTTCTCCAGGGTTGGTTTTAGTTCAAAGCGCCCGGGCATGGCTTCCTCCTg                                                                                                                                        >  2:393382/1‑151 (MQ=255)
         aaTCCGACCACCAATACAATGGCGGCAATAATGATCCCCCGACGATGCATCGGCGGCAGCGGGTCCATGAAGCGAAAATTGTCCGGCGCGTGCCAGACTTTCTCCAGGGTTGGTTTTAGTTCAAAGCGCCCGGGCATGGCTTCCTCCTGCt                                                                                                                                      <  1:1123252/151‑1 (MQ=255)
               accaccAATACAATGGCGGCAATAATGATCCCCCGACGATGCATCGGCGGCAGCGGGTCCATGAAGCGAAAATTGTCCGGCGCGTGCCAGACTTTCTCCAGGGTTGGTTTTAGTTCAAAGCGCCCGGGCATGGCTTCCTCCTGCTCCGCGt                                                                                                                                <  1:1085127/151‑1 (MQ=255)
                    caATACAATGGCGGCAATAATGATCCCCCGACGATGCATCGGCGGCCGCGGGGCCCTGAAAGCAAAATTGTCCGGCGCGTGCCAGCCTTTTTCCAGGGGTGGTTTTAGGTCAAAGCGCCCGGGCATGGCCTCCCTCTGCTCAGCGTCTTg                                                                                                                            >  1:712111/1‑150 (MQ=255)
                      aTACAATGGCGGCAATAATGATCCCCCGACGATGCATCGGCGGCAGCGGGTCCATGAAGCGAAAATTGTCCGGCGCGTGCCAGACTTTCTCCAGGGTTGGTTTTAGTTCAAAGCGCCCGGGCATGGCTTCCTCCTGCTCCGCGTCTTGTTc                                                                                                                         <  2:899537/151‑1 (MQ=255)
                      aTACAATGGCGGCAATAATGATCCCCCGACGATGCATCGGCGGCAGCGGGTCCATGAAGCGAAAATTGTCCGGCGCGTGCCAGACTTTCTCCAGGGTTGGTTTTAGTTCAAAGCGCCCGGGCATGGCTTCCTCCTGCTCCGCGTCTTGTTc                                                                                                                         <  1:300447/151‑1 (MQ=255)
                        aCAATGGCGGCAATAATGATCCCCCGACGATGCATCGGCGGCAGCGGGTCCATGAAGCGAAAATTGTCCGGCGCGTGCCAGACTTTCTCCAGGGTTGGTTTTAGTTCAAAGCGCCCGGGCATGGCTTCCTCCTGCTCCGCGTCTTGTTcc                                                                                                                        <  1:1005423/150‑1 (MQ=255)
                        aCAATGGCGGCAATAATGATCCCCCGACGATGCATCGGCGGCAGCGGGTCCATGAAGCGAAAATTGTCCGGCGCGTGCCAGACTTTCTCCAGGGTTGGTTTTAGTTCAAAGCGCCCGGGCATGGCTTCCTCCTGCTCCGCGTCTTGTTCCt                                                                                                                       <  2:631780/151‑1 (MQ=255)
                         cAATGGCGGCAATAATGATCCCCCGACGATGCATCGGCGGCAGCGGGTCCATGAAGCGAAAATTGTCCGGCGCGTGCCAGACTTTCTCCAGGGTTGGTTTTAGTTCAAAGCGCCCGGGCATGGCTTCCTCCTGCTCCGCGTCTTGTTCCTc                                                                                                                      >  2:890712/1‑151 (MQ=255)
                              gcggcAATAATGATCCCCCGACGATGCATCGGCGGCAGCGGGTCCATGAAGCGAAAATTGTCCGGCGCGTGCCAGACTTTCTCCAGGGTTGGTTTTAGTTCAAAGCGCCCGGGCATGGCTTCCTCCTGCTCCGCGTCTTGTTCCTCAATc                                                                                                                  >  2:1150157/1‑150 (MQ=255)
                              gcggcAATAATGATCCCCCGACGATGCATCGGCGGCAGCGGGTCCATGAAGCGAAAATTGTCCGGCGCGTGCCAGACTTTCTCCAGGGTTGGTTTTAGTTCAAAGCGCCCGGGCATGGCTTCCTCCTGCTCCGCGTCTTGTTCCTCAATCa                                                                                                                 <  1:13249/151‑1 (MQ=255)
                                  cAATAATGATCCCCCGACGATGCATCGGCGGCAGCGGGTCCATGAAGCGAAAATTGTCCGGCGCGTGCCAGACTTTCTCCAGGGTTGGTTTTAGTTCAAAGCGCCCGGGCATGGCTTCCTCCTGCTCCGCGTCTTGTTCCTCAATCATAGc                                                                                                             <  2:360793/151‑1 (MQ=255)
                                      aatGATCCCCCGACGATGCATCGGCGGCAGCGGGTCCATGAAGCGAAAATTGTCCGGCGCGTGCCAGACTTTCTCCAGGGTTGGTTTTAGTTCAAAGCGCCCGGGCATGGCTTCCTCCTGCTCCGCGTCTTGTTCCTCAATCATAGCCTa                                                                                                          <  2:1121392/150‑1 (MQ=255)
                                      aatGATCCCCCGACGATGCATCGGCGGCAGCGGGTCCATGAAGCGAAAATTGTCCGGCGCGTGCCAGACTTTCTCCAGGGTTGGTTTTAGTTCAAAGCGCCCGGGCATGGCTTCCTCCTGCTCCGCGTCTTGTTCCTCAATCATAGCCTAt                                                                                                         <  1:1018292/151‑1 (MQ=255)
                                            cccccGACGATGCATCGGCGGCAGCGGGTCCATGAAGCGAAAATTGTCCGGCGCGTGCCAGACTTTCTCCAGGGTTGGTTTTAGTTCAAAGCGCCCGGGCATGGCTTCCTCCTGCTCCGCGTCTTGTTCCTCAATCATAGCCTATGAATa                                                                                                    >  1:123720/1‑150 (MQ=255)
                                            cccccGACGATGCATCGGCGGCAGCGGGTCCATGAAGCGAAAATTGTCCGGCGCGTGCCAGACTTTCTCCAGGGTTGGTTTTAGTTCAAAGCGCCCGGGCATGGCTTCCTCCTGCTCCGCGTCTTGTTCCTCAATCATAGCCTATGAATa                                                                                                    >  1:775607/1‑150 (MQ=255)
                                               ccGACGATGCATCGGCGGCAGCGGGTCCATGAAGCGAAAATTGTCCGGCGCGTGCCAGACTTTCTCCAGGGTTGGTTTTAGTTCAAAGCGCCCGGGCATGGCTTCCTCCTGCTCCGCGTCTTGTTCCTCAATCATAGCCTATGAATAAGCt                                                                                                <  2:227432/151‑1 (MQ=255)
                                                       gCATCGGCGGCAGCGGGTCCATGAAGCGAAAATTGTCCGGCGCGTGCCAGACTTTCTCCAGGGTTGGTTTTAGTTCAAAGCGCCCGGGCATGGCTTCCTCCTGCTCCGCGTCTTGTTCCTCAATCATAGCCTATGAATAAGCTAACGCTat                                                                                        <  2:185472/151‑1 (MQ=255)
                                                       gCATCGGCGGCAGCGGGTCCATGAAGCGAAAATTGTCCGGCGCGTGCCAGACTTTCTCCAGGGTTGGTTTTAGTTCAAAGCGCCCGGGCATGGCTTCCTCCTGCTCCGCGTCTTGTTCCTCAATCATAGCCTATGAATAAGCTAACGCTat                                                                                        >  2:1045093/1‑151 (MQ=255)
                                                        cATCGGCGGCAGCGGGTCCATGAAGCGAAAATTGTCCGGCGCGTGCCAGACTTTCTCCAGGGTTGGTTTTAGTTCAAAGCGCCCGGGCATGGCTTCCTCCTGCTCCGCGTCTTGTTCCTCAATCATAGCCTATGAATAAGCTAACGCTatg                                                                                       <  2:570692/151‑1 (MQ=255)
                                                         aTCGGCGGCAGCGGGTCCATGAAGCGAAAATTGTCCGGCGCGTGCCAGACTTTCTCCAGGGTTGGTTTTAATTCAAAGCGCCCGGGCATGGCCTCCTCCTGCTCCGCGTCTTGTTCCTCAATCATAGCCTATGAATAAGCTAACGCTat                                                                                        >  1:759653/1‑149 (MQ=255)
                                                           cggcggCAGCGGGTCCATGAAGCGAAAATTGTCCGGCGCGTGCCAGACTTTCTCCAGGGTTGGTTTTAGTTCAAAGCGCCCGGGCATGGCTTCCTCCTGCTCCGCGTCTTGTTCCTCAATCATAGCCTATGAATAAGCTAACGCTatgatg                                                                                    <  1:176978/151‑1 (MQ=255)
                                                            ggcggcAGCGGGTCCATGAAGCGAAAATTGTCCGGCGCGTGCCAGACTTTCTCCAGGGTTGGTTTTAGTTCAAAGCGCCCGGGCATGGCTTCCTCCTGCTCCGCGTCTTGTTCCTCAATCATAGCCTATGAATAAGCTAACGCTATGATGt                                                                                   >  2:445055/1‑151 (MQ=255)
                                                                gcAGCGGGTCCATGAAGCGAAAATTGTCCGGCGCGTGCCAGACTTTCTCCAGGGTTGGTTTTAGTTCAAAGCGCCCGGGCATGGCTTCCTCCTGCTCCGCGTCTTGTTCCTCAATCATAGCCTATGAATAAGCTAACGCTATGATGTCCGt                                                                               <  1:887232/151‑1 (MQ=255)
                                                                    cGGGTCCATGAAGCGAAAATTGTCCGGCGCGTGCCAGACTTTCTCCAGGGTTGGTTTTAGTTCAAAGCGCCCGGGCATGGCTTCCTCCTGCTCCGCGTCTTGTTCCTCAATCATAGCCTATGAATAAGCTAACGCTatgatg                                                                                    <  2:156122/142‑1 (MQ=255)
                                                                    cGGGTCCATGAAGCGAAAATTGTCCGGCGCGTGCCAGACTTTCTCCAGGGTTGGTTTTAGTTCAAAGCGCCCGGGCATGGCTTCCTCCTGCTCCGCGTCTTGTTCCTCAATCATAGCCTATGAATAAGCTAACGCTatgatg                                                                                    >  1:156120/1‑142 (MQ=255)
                                                                    cGGGTCCATGAAGCGAAAATTGTCCGGCGCGTGCCAGACTTTCTCCAGGGTTGGTTTTAGTTCAAAGCGCCCGGGCATGGCTTCCTCCTGCTCCGCGTCTTGTTCCTCAATCATAGCCTATGAATAAGCTAACGCTATGATGTCCGTGGt                                                                            >  1:135010/1‑150 (MQ=255)
                                                                       gTCCATGAAGCGAAAATTGTCCGGCGCGTGCCAGACTTTCTCCAGGGTTGGTTTTAGTTCAAAGCGCCCGGGCATGGCTTCCTCCTGCTCCGCGTCTTGTTCCTCAATCATAGCCTATGAATAAGCTAACGCTATGATGTCCGTGGTAAAc                                                                        >  1:234154/1‑151 (MQ=255)
                                                                        tCCATGAAGCGAAAATTGTCCGGCGCGTGCCAGACTTTCTCCAGGGTTGGTTTTAGTTCAAAGCGCCCGGGCATGGCTTCCTCCTGCTCCGCGTCTTGTTCCTCAATCATAGCCTATGAATAAGCTAACGCTATGATGTCCGTGGTAAAcc                                                                       >  1:151634/1‑151 (MQ=255)
                                                                         ccATGAAGCGAAAATTGTCCGGCGCGTGCCAGACTTTCTCCAGGGTTGGTTTTAGTTCAAAGCGCCCGGGCATGGCTTCCTCCTGCTCCGCGTCTTGTTCCTCAATCATAGCCTATGAATAAGCTAACGCTATGATGTCCGTGGTAAAccc                                                                      <  1:300503/151‑1 (MQ=255)
                                                                          cATGAAGCGAAAATTGTCCGGCGCGTGCCAGACTTTCTCCAGGGTTGGTTTTAGTTCAAAGCGCCCGGGCATGGCTTCCTCCTGCTCCGCGTCTTGTTCCTCAATCATAGCCTATGAATAAGCTAACGCTATGATGTCCGTGGTAAACCCg                                                                     <  2:403914/151‑1 (MQ=255)
                                                                          cATGAAGCGAAAATTGTCCGGCGCGTGCCAGACTTTCTCCAGGGTTGGTTTTAGTTCAAAGCGCCCGGGCATGGCTTCCTCCTGCTCCGCGTCTTGTTCCTCAATCATAGCCTATGAATAAGCTAACGCTATGATGTCCGTGGTAAACCCg                                                                     <  2:188058/151‑1 (MQ=255)
                                                                             gAAGCGAAAATTGTCCGGCGCGTGCCAGACTTTCTCCAGGGTTGGTTTTAGTTCAAAGCGCCCGGGCATGGCTTCCTCCTGCTCCGCGTCTTGTTCCTCAATCATAGCCTATGAATAAGCTAACGCTATGATGTCCGTGGTAAACCCGCCt                                                                  <  2:293685/151‑1 (MQ=255)
                                                                                   aaaaTTGTCCGGCGCGTGCCAGATTTTCTCCAGGGTTGGTTTTAGTTCAAAGCGCCCGGGCATGGCTTCCTCCTGCTCCGCGTCTTGTTCCTCAATCATAGCCTATGAATAAGCTAACGCTCTGATGTCCGTGGTAAACCCGCCTttatt                                                             <  2:322118/150‑1 (MQ=255)
                                                                                   aaaaTTGTCCGGCGCGTGCCAGACTTTCTCCAGGGTTGGTTTTAGTTCAAAGCGCCCGGGCATGGCTTCCTCCTGCTCCGCGTCTTGTTCCTCAATCATAGCCTATGAATAAGCTAACGCTATGATGTCCGTGGTAAACCCGCCTttat                                                              <  1:937293/149‑1 (MQ=255)
                                                                                    aaaTTGTCCGGCGCGTGCCAGACTTTCTCCAGGGTTGGTTTTAGTTCAAAGCGCCCGGGCATGGCTTCCTCCTGCTCCGCGTCTTGTTCCTCAATCATAGCCTATGAATAAGCTAACGCTATGATGTCCGTGGTAAGCCCGCCTTtattat                                                           <  1:855195/151‑1 (MQ=255)
                                                                                      aTTGTCCGGCGCGTGCCAGACTTTCTCCAGGGTTGGTTTTAGTTCAAAGCGCCCGGGCATGGCTTCCTCCTGCTCCGCGTCTTGTTCCTCAATCATAGCCTATGAATAAGCTAACGCTATGATGTCCGTGGTAAACCCGCCTTTATTatat                                                         <  1:561786/151‑1 (MQ=255)
                                                                                        tGTCCGGCGCGTGCCAGACTTTCTCCAGGGTTGGTTTTAGTTCAAAGCGCCCGGGCATGGCTTCCTCCTGCTCCGCGTCTTGTTCCTCAATCATAGCCTATGAATAAGCTAACGCTATGATGTCCGTGGTAAACCCGCCTTTATTATAtt                                                        <  2:866488/150‑1 (MQ=255)
                                                                                         gTCCGGCGCGTGCCAGACTTTCTCCAGGGTTGGTTTTAGTTCAAAGCGCCGGGGCATGGCTTCCTCCTGCTCCGCGTTTTGTTCCTCAATCATAGCCTATGAATAAGCTAACGCTATGATGTCCGTGGTAAACCCGCCTTTATTatat                                                         <  1:911262/148‑1 (MQ=255)
                                                                                         gTCCGGCGCGTGCCAGACTTTCTCCAGGGTTGGTTTTAGTTCAAAGCGCCCGGGCATGGCTTCCTCCTGCTCCGCGTCTTGTTCCTCAATCATAGCCTATGAATAAGCTAACGCTATGATGTCCGTGGTAAACCCGCCTTTATTATAtt                                                        <  2:522513/149‑1 (MQ=255)
                                                                                         gTCCGGCGCGTGCCAGACTTTCTCCAGGGTTGGTTTTAGTTCAAAGCGCCCGGGCATGGCTTCCTCCTGCTCCGCGTCTTGTTCCTCAATCATAGCCTATGAATAAGCTAACGCTATGATGTCCGTGGTAAACCCGCCTTTATTATATTc                                                       >  1:826104/1‑150 (MQ=255)
                                                                                                      cAGACTTTCTCCAGGGTTGGTTTTAGTTCAAAGCGCCCGGGCATGGCTTCCTCCTGCTCCGCGTCTTGTTCCTCAATCATAGCCTATGAATAAGCTAACGCTATGATGTCCGTGGTAAACCCGCCTTTATTATATTCATACGGGATATTGc                                         <  2:196723/151‑1 (MQ=255)
                                                                                                           tttCTCCAGGGTTGGTTTTAGTTCAAAGCGCCCGGGCATGGCTTCCTCCTGCTCCGCGTCTTGTTCCTCAATCATAGCCTATGAATAAGCTAACGCTATGATGTCCGTGGTAAACCCGCCTTTATTATATTCATACGGGATATTGCTATTg                                    >  2:437887/1‑151 (MQ=255)
                                                                                                            ttCTCCAGGGTTGGTTTTAGTTCAAAGCGCCCGGGCATGGCTTCCTCCTGCTCCGCGTCTTGTTCCTCAATCATAGCCTATGAATAAGCTAACGCTATGATGTCCGTGGTAAACCCGCCTTTATTATATTCATACGGGATATTGCTATTGt                                   >  2:186609/1‑151 (MQ=255)
                                                                                                                ccAGGGTTGGTTTTAGTTCAAAGCGCCCGGGCATGGCTTCCTCCTGCTCCGCGTCTTGTTCCTCAATCATAGCCTATGAATAAGCTAACGCTATGATGTCCGTGTTAAACCCGCCTTTATTATATTCATACGGGATATTGCTATTGtt                                  <  1:692832/148‑1 (MQ=255)
                                                                                                                  aGGGTTGGTTTTAGTTCAAAGCGCCCGGGCATGGCTTCCTCCTGCTCCGCGTCTTGTTCCTCAATCATAGCCTATGAATAAGCTAACGCTATGATGTCCGTGGTAAACCCGCCTTTATTATATTCATACGGGATATTGCTATTGTTTCttt                             >  2:389063/1‑151 (MQ=255)
                                                                                                                     gttggttTTAGTTCAAAGCGCCCGGGCATGGCTTCCTCCTGCTCCGCGTCTTGTTCCTCAATCATAGCCTATGAATAAGCTAACGCTATGATGTCCGTGGTAAACCCGCCTTTATTATATTCATACGGGATATTGCTATTGTTTCTTTTTc                          >  1:832726/1‑151 (MQ=255)
                                                                                                                      ttgtttTTAGTTCAAAGCGCCCGGGAATGGCTCCCTCTTGCTCCGCGTTTTGTTCCTAAATCATAGCCTATGAATAAGCTAACGTTTTGATGTCCGTGGTAAACCCGCCTTTATTATATTCATACGGGATATTGCTATTGTTTCttttt                           <  2:770281/149‑1 (MQ=255)
                                                                                                                       tggttTTAGTTCAAAGCGCCCGGGCATGGCTTCCTCCTGCTCCGCGTTTTGTTCCTCAATCATAGCCTATGAATAAGCTAACGCTATGATGTCCGTGGTAAACCCGCCTTTATTATATTCATACGGGATATTGCTATTGTTTCTTTTTcc                         <  2:1061687/150‑1 (MQ=255)
                                                                                                                        ggttTTAGTTCAAAGCGCCCGGGCATGGCTTCCTCCTGCTCCGCGTCTTGTTCCTCAATCATAGCCTATGAATAAGCTAACGCTATGATGTCCGTGGTAAACCCGCCTTTATTATATTCATACGGGATATTGCTATTGTTTCTTTTTccc                        <  2:267014/150‑1 (MQ=255)
                                                                                                                         gttTTAGTTCAAAGCGCCCGGGCATGGCTTCCTCCTGCTCCGCGTCTTGTTCCTCAATCATAGCCTATGAATAAGCTAACGCTATGATGTCCGTGGTAAACCCGCCTTTATTATATTCATACGGGATATTGCTATTGTTTCTTTTTCCCTg                      >  1:24554/1‑151 (MQ=255)
                                                                                                                          ttttAGTTCAAAGCGCCCGGGCATGGCTTCCTCCTGCTCCGCGTCTTGTTCCTCAATCATAGCCTATGAATAAGCTAACGCTATGATGTCCGTGGTAAACCCGCCTTTATTATATTCATACGGGATATTGCTATTGTTTCTTTTTCCCTgg                     >  1:582983/1‑151 (MQ=255)
                                                                                                                           tttAGTTCAAGGCGCCCGGGCATGGCTTCCTCCTGCTCCGCGTCTTGTTCCTCAATCATAGCCTATGAATAAGCTAACGCTATGATGTCCGTGGTAAACCCGCCTTTATTATATTCATACGGGATATTGCTATTGTTTCTTTTTCCCTgg                     <  1:770195/150‑1 (MQ=255)
                                                                                                                           tttAGTTCAAAGCGCCCGGGCATGGCTTCCTCCTGCTCCGCGTCTTGTTCCTCAATCATAGCCTATGAATAAGCTAACGCTATGATGTCCGTGGTAAACCCGCCTTTATTATATTCATACGGGATATTGCTATTGTTTCTTTTTCCCTggg                    >  1:220031/1‑151 (MQ=255)
                                                                                                                             tAGTTCAAAGCGCCCGGGCATGGCTTCCTCCTGCTCCGCGTCTTGTTCCTCAATCATAGCCTATGAATAAGCTAACGCTATGATGTCCGTGGTAAACCCGCCTTTATTATATTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGAt                  >  2:384687/1‑151 (MQ=255)
                                                                                                                                ttCAAAGCGCCCGGGCATGGCTTCCTCCTGCTCCGCGTGTTGTTCCTCAATCATAGCCTATGAATAGGCTAACCCTATGATGTCCTTGTTAAACCCGCCTTTATTATATTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGAttt                <  1:1145386/150‑1 (MQ=255)
                                                                                                                                 tCAAAGCGCCCGGGCATGGCTTCCTCCTGCTCCGCGTCTTGTTCCTCAATCATAGCCTATGAATAAGCTAACGCTATGATGTCCGTGGTAAACCCGCCTTTATTATATTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGt              >  1:831055/1‑151 (MQ=255)
                                                                                                                                   aaaGCTCCCGGGCATGGCTTCCTCCTGCTCCGCGTCTTGTTCCTCAATCATAGCCTATGAATAAGCTAACGCTATGATGTCCGTGGTAAACCCGCCTTTATTATATTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGt              <  1:139875/149‑1 (MQ=255)
                                                                                                                                    aaGCGCCCGGGCATGGCTTCCTCCTGCTCCGCGTCTTGTTCCTCAATCATAGCCTATGAATAAGCTAACGCTATGATGTCCGTGGTAAACCCGCCTTTATTATATTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGtcat           >  2:658161/1‑151 (MQ=255)
                                                                                                                                        gcCCGGGCATGGCTTCCTCCTGCTCCGCGTCTTGTTCCTCAATCATAGCCTATGAATAAGCTAACGCTATGATGTCCGTGGTAAACCCGCCTTTATTATATTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCAtt       >  2:830555/1‑151 (MQ=255)
                                                                                                                                         cccGGGCATGGCTTCCTCCTGCTCCGCGTCTTGTTCCTCAATCATAGCCTATGAATAAGCTAACGCTATGATGTCCGTGGTAAACCCGCCTTTATTATATTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCAtt       <  2:1106171/150‑1 (MQ=255)
                                                                                                                                          ccGGGCATGGCTTCCTCCTGCTCCGCGTCTTGTTCCTCAATCATAGCCTATGAATAAGCTAACGCTATGATGTCCGTGGTAAACCCGCCTTTATTATATTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCAtt       <  2:1175617/149‑1 (MQ=255)
                                                                                                                                          ccGGGCATGGCTTCCTCCTGCTCCGCGTCTTGTTCCTCAATCATAGCCTATGAATAAGCTAACGCTATGATGTCCGTGGTAAACCCGCCTTTATTATATTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTcc     >  1:694431/1‑151 (MQ=255)
                                                                                                                                            gggCATGGCTTCCTCCTGCTCCGCGTCTTGTTCCTCAATCATAGCCTATGAATAAGCTAACGCTATGATGTCCGTGGTAAACCCGCCTTTATTATATTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCcg   <  2:977596/151‑1 (MQ=255)
                                                                                                                                             ggCATGGCTTCCTCCTGCTCCGCGTCTTGTTCCTCAATCATAGCTTATGAATAAGCTAACGCTATGATGTCCGTGTTAACTCCGCCTTTATTATATTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCcgc  <  1:625032/151‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                               
GGAAGCAGAAATCCGACCACCAATACAATGGCGGCAATAATGATCCCCCGACGATGCATCGGCGGCAGCGGGTCCATGAAGCGAAAATTGTCCGGCGCGTGCCAGACTTTCTCCAGGGTTGGTTTTAGTTCAAAGCGCCCGGGCATGGTTTCCTCCTGCTCCGCGTCTTGTTCCTCAATCATAGCCTATGAATAAGCTAACGCTATGATGTCCGTGGTAAACCCGCCTTTATTATATTCATACGGGATATTGCTATTGTTTCTTTTTCCCTGGGATTTGTCATCATTCCCGC  >  NC_000913/4428572‑4428863

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A