Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F50 I2 R1	121	82.0	2593086	97.7%	2533445	150.3

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,903,235	C→T	A447V (GCC→GTC)	ygcE →	putative kinase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,903,235	0	C	T	98.7%	298.4 / NA	77	A447V (GCC→GTC)	ygcE	putative kinase
Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (38/38); minor base G (0/1); total (38/39)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CGGCACGACGTAACGCCATTAACGGTTGTGCAAGCCTGGGGGCAGCGATTAATACAGCGGTAGGTCTGGGGCTATACCCGGATTACGCAACGGCTGTCGATAACATGGTTCGCGTGAAAGATATCTTTATACCGATTGAGAGCAATGCCAAACGCTACGACGCGATGAATAAAGGCATTTTCAAAGACCTAACCAAACATACTGATGTGATCCTGAAAAAATCGTATGAAGTGATGCATGGGGAATTGGGGAATGTGGATTCGATCCAGAGCTGGTCGAATGCGTAAGTGAGGAA  >  NC_000913/2903088‑2903382

cGGCACGACGTAACGCCATTAACGGTTGTGCAAGCCTGGGGGCAGCGATTAATACAGCGGTAGGTCTGGGGCTATACCCGGATTACGCAACGGCTGTCGATAACATGGTTCGCGTGAAAGATATCTTTATACCGATTGAGAGCAATGTCaa                                                                                                                                                  <  1:467125/151‑1 (MQ=255)

 ggCACGACGTAACGCCATTAACGGTTGTGCAAGCCTGGGGGCAGCGATTAATACAGCGGTAGGTCTGGGGCTATACCCGGATTACGCAACGGCTGTCGATAACATGGTTCGCGTGAAAGATATCTTTATACCGATTGAGAGCAATGTCaaa                                                                                                                                                 <  2:537500/151‑1 (MQ=255)

  gCACGACGTAACGCCATTAACGGTTGTGCAAGCCTGGGGGCAGCGATTAATACAGCGGTAGGTCTGGGGCTATACCCGGATTACGCAACGGCTGTCGATAACATGGTTCGCGTGAAAGATATCTTTATACCGATTGAGAGCAATGTCAAAc                                                                                                                                                >  2:871886/1‑151 (MQ=255)

  gCACGACGTAACGCCATTAACGGTTGTGCAAGCCTGGGGGCAGCGATTAATACAGCGGTAGGTCTGGGGCTATACCCGGATTACGCAACGGCTGTCGATAACATGGTTCGCGTGAAAGATATCTTTATACCGATTGAGAGCAATGTCAAAc                                                                                                                                                <  2:1288244/151‑1 (MQ=255)

   cACGACGTAACGCCATTAACGGTTGTGCAAGCCTGGGGGCAGCGATTAATACAGCGGTAGGTCTGGGGCTATACCCGGATTACGCAACGGCTGTCGATAACATGGTTCGCGTGAAAGATATCTTTATACCGATTGAGAGCAATGTCAAACg                                                                                                                                               >  2:292968/1‑151 (MQ=255)

     cgacgTAACGCCATTAACGGTTGTGCAAGCCTGGGGGCAGCGATTAATACAGCGGTAGGTCTGGGGCTATACCCGGATTACGCAACGGCTGTCGATAACATGGTTCGCGTGAAAGATATCTTTATACCGATTGAGAGCAATGTCAAACGCt                                                                                                                                             <  2:1016027/151‑1 (MQ=255)

       acgTAACGCCATTAACGGTTGTGCAAGCCTGGGGGCAGCGATTAATACAGCGGTAGGTCTGGGGCTATACCCGGATTACGCAACGGCTGTCGATAACATGGTTCGCGTGAAAGATATCTTTATACCGATTGAGAGCAATGTCAAACGCTac                                                                                                                                           >  2:66913/1‑151 (MQ=255)

        cgTAACGCCATTAACGGTTGTGCAAGCCTGGGGGCAGCGATTAATACAGCGGTAGGTCTGGGGCTATACCCGGATTACGCAACGGCTGTCGATAACATGGTTCGCGTGAAAGATATCTTTATACCGATTGAGAGCAATGTCAAACGCTacg                                                                                                                                          <  2:1198350/151‑1 (MQ=255)

         gTAACGCCATTAACGGTTGTGCAAGCCTGGGGGCAGCGATTAATACAGCGGTAGGTCTGGGGCTATACCCGGATTACGCAACGGCTGTCGATAACATGGTTCGCGTGAAAGATATCTTTATACCGATTGAGAGCAATGTCAAACGCTacga                                                                                                                                         <  2:792777/151‑1 (MQ=255)

           aaCGCCATTAACGGTTGTGCAAGCCTGGGGGCAGCGATTAATACAGCGGTAGGTCTGGGGCTATACCCGGATTACGCAACGGCTGTCGATAACATGGTTCGCGTGAAAGATATCTTTATACCGATTGAGAGCAATGTCAAACGCTacgacg                                                                                                                                       <  1:507231/151‑1 (MQ=255)

           aaCGCCATTAACGGTTGTGCAAGCCTGGGGGCAGCGATTAATACAGCGGTAGGTCTGGGGCTATACCCGGATTACGCAACGGCTGTCGATAACATGGTTCGCGTGAAAGATATCTTTATACCGATTGAGAGCAATGTCAAACGCTacgac                                                                                                                                        <  2:799736/150‑1 (MQ=255)

            aCGCCATTAACGGTTGTGCAAGCCTGGGGGCAGCGATTAATACAGCGGTAGGTCTGGGGCTATACCCGGATTACGCAACGGCTGTCGATAACATGGTTCGCGTGAAAGATATCTTTATACCGATTGAGAGCAATGTCAAACGCTACGAcgc                                                                                                                                      <  1:1253761/151‑1 (MQ=255)

                cATTAACGGTTGTGCAAGCCTGGGGGCAGCGATTAATACAGCGGTAGGTCTGGGGCTATACCCGGATTACGCAACGGCTGTCGATAACATGGTTCGCGTGAAAGATATCTTTATACCGATTGAGAGCAATGTCAAACGCTACGACGCGATg                                                                                                                                  <  1:1234333/151‑1 (MQ=255)

                cATTAACGGTTGTGCAAGCCTGGGGGCAGCGATTAATACAGCGGTAGGTCTGGGGCTATACCCGGATTACGCAACGGCTGTCGATAACATGGTTCGCGTGAAAGATATCTTTATACCGATTGAGAGCAATGTCAAACGCTACGACGCGATg                                                                                                                                  >  1:891289/1‑151 (MQ=255)

                 aTTAACGGTTGTGCAAGCCTGGGGGCAGCGATTAATACAGCGGTAGGTCTGGGGCTATACCCGGATTACGCAACGGCTGTCGATAACATGGTTCGCGTGAAAGATATCTTTATACCGATTGAGAGCAATGTCAAACGCTACGACGCGATGa                                                                                                                                 <  1:64943/151‑1 (MQ=255)

                   tAACGGTTGTGCAAGCCTGGGGGCAGCGATTAATACAGCGGTAGGTCTGGGGCTATACCCGGATTACGCAACGGCTGTCGATAACATGGTTCGCGTGAAAGATATCTTTATACCGATTGAGAGCAATGTCAAACGCTACGACGCGATGaa                                                                                                                                <  2:1224567/150‑1 (MQ=255)

                    aaCGGTTGTGCAAGCCTGGGGGCAGCGATTAATACAGCGGTAGGTCTGGGGCTATACCCGGATTACGCAACGGCTGTCGATAACATGGTTCGCGTGAAAGATATCTTTATACCGATTGAGAGCAATGTCAAACGCTACGACGCGATGAAt                                                                                                                               >  1:528436/1‑150 (MQ=255)

                    aaCGGTTGTGCAAGCCTGGGGGCAGCGATTAATACAGCGGTAGGTCTGGGGCTATACCCGGATTACGCAACGGCTGTCGATAACATGGTTCGCGTGAAAGATATCTTTATACCGATTGAGAGCAATGTCAAACGCTACGACGCGATGAATa                                                                                                                              <  2:233271/151‑1 (MQ=255)

                     aCGGTTGTGCAAGCCTGGGGGCAGCGATTAATACAGCGGTAGGTCTGGGGCTATACCCGGATTACGCAACGGCTGTCGATAACATGGTTCGCGTGAAAGATATCTTTATACCGATTGAGAGCAATGTCAAACGCTACGACGCGATGAATaa                                                                                                                             <  2:186336/151‑1 (MQ=255)

                        gTTGTGCAAGCCTGGGGGCAGCGATTAATACAGCGGTAGGTCTGGGGCTATACCCGGATTACGCAACGGCTGTCGATAACATGGTTCGCGTGAAAGATATCTTTATACCGATTGAGAGCAATGTCAAACGCTACGACGCGATGAATAAAgg                                                                                                                          <  1:206809/151‑1 (MQ=255)

                             gCAAGCCTGGGGGCAGCGATTAATACAGCGGTAGGTCTGGGGCTATACCCGGATTACGCAACGGCTGTCGATAACATGGTTCGCGTGAAAGATATCTTTATACCGATTGAGAGCAATGTCAAACGCTACGACGCGATGAATAAAGGCAttt                                                                                                                     >  1:521591/1‑151 (MQ=255)

                               aaGCCTGGGGGCAGCGATTAATACAGCGGTAGGTCTGGGGCTATACCCGGATTACGCAACGGCTGTCGATAACATGGTTCGCGTGAAAGATATCTTTATACCGATTGAGAGCAATGTCAAACGCTACGACGCGATGAATAAAGGCATTTTc                                                                                                                   <  2:1290666/151‑1 (MQ=255)

                               aaGCCTGGGGGCAGCGATTAATACAGCGGTAGGTCTGGGGCTATACCCGGATTACGCAACGGCTGTCGATAACATGGTTCGCGTGAAAGATATCTTTATACCGATTGAGAGCAATGTCAAACGCTACGACGCGATGAATAAAGGCATTTTc                                                                                                                   <  2:71005/151‑1 (MQ=255)

                                aGCCTGGGGGCAGCGATTAATACAGCGGTAGGTCTGGGGCTATACCCGGATTACGCAACGGCTGTCGATAACATGGTTCGCGTGAAAGATATCTTTATACCGATTGAGAGCAATGTCAAACGCTACGACGCGATGAATAAAGGCATTTTCa                                                                                                                  <  1:364580/151‑1 (MQ=255)

                                   cTGGTGGCAGCGATTAATACAGCGGTAGGTCTGGGTCTAAACCCGTATTTCGCACCGGCTGTCGATAGCATGGTTCGCGTGAAAGATATCTATATACCGATTGAGAGCAATGGCAAACGCTCCGACGGGATGAATAAAGGCagtgt                                                                                                                    <  1:34983/146‑5 (MQ=255)

                                   cTGGGGGCAGCGATTAATACAGCGGTAGGTCTGGGGCTATACCCGGATTACGCAACGGCTGTCGATAACATGGTTCGCGTGAAAGATATCTTTATACCGATTGAGAGCAATGTCAAACGCTACGACGCGATGAATAAAGGCATTTTCa                                                                                                                  >  1:929810/1‑148 (MQ=255)

                                        ggCAGCGATTAATACAGCGGTAGGTCTGGGGCTATACCCGGATTACGCAACGGCTGTCGATAACATGGTTCGCGTGAAAGATATCTTTATACCGATTGAGAGCAATGTCAAACGCTACGACGCGATGAATAAAGGCATTTTCAAAGACCt                                                                                                           >  2:11786/1‑150 (MQ=255)

                                        ggCAGCGATTAATACAGCGGTAGGTCTGGGGCTATACCCGGATTACGCAACGGCTGTCGATAACATGGTTCGCGTGAAAGATATCTTTATACCGATTGAGAGCAATGTCAAACGCTACGACGCGATGAATAAAGGCATTTTCAAAGACCTa                                                                                                          <  1:1115627/151‑1 (MQ=255)

                                              gATTAATACAGCGGTAGGTCTGGGGCTATACCCGGATTACGCAACGGCTGTCGATAACATGGTTCGCGTGAAAGATATCTTTATACCGATTGAGAGCAATGTCAAACGCTACGACGCGATGAATAAAGGCATTTTCAAAGACCTAACCaa                                                                                                     >  2:509522/1‑150 (MQ=255)

                                               aTTAATACAGCGGTAGGTCTGGGGCTATACCCGGATTACGCAACGGCTGTCGATAACATGGTTCGCGTGAAAGATATCTTTATACCGATTGAGAGCAATGTCAAACGCTACGACGCGATGAATAAAGGCATTTTCAAAGACCTAACCAAAc                                                                                                   <  1:423179/151‑1 (MQ=255)

                                                     aCAGCGGTAGGTCTGGGGCTATACCCGGATTACGCAACGGCTGTCGATAACATGGTTCGCGTGAAAGATATCTTTATACCGATTGAGAGCAATGTCAAACGCTACGACGCGATGAATAAAGGCATTTTCAAAGACCTAACCAAACATACTg                                                                                             <  2:1023032/151‑1 (MQ=255)

                                                          ggtcggtcTGGGGCTATACCCGGATTACGCAAAGGCTGTCGATAACATGGTTCGCGTGAAAGATATCTTTATACCGATTGAGAGCAATGTCAAACGCTACGACGCGATGAATAAAGGCATTTTCAAAGACCTAACCCAACATACt                                                                                              >  1:175835/1‑145 (MQ=255)

                                                          ggTAGGTCTGGGGCAATACCCGGATTACGCAACGTCTGTCGATAACATGGTTCGCGTGAAAGATATCTTTAGACCGATTGAGAGCAATGTCAAACGCTACGACGCGATGAATAAAGGCATTTTCAAAGACCTAACCAAACATACt                                                                                              <  2:175836/145‑1 (MQ=255)

                                                               gTCTGGGGCTATACCCGGATTACGCAACGGCTGTCGATAACATGGTTCGCGTGAAAGATATCTTTATACCGATTGAGAGCAATGTCAAACGCTACGACGCGATGAATAAAGGCATTTTCAAAGACCTAACCAAACATACTGATGTGATCCt                                                                                   <  2:1247809/151‑1 (MQ=255)

                                                                  tGGGGCTATACCCGGATTACGCAACGGCTGTCGATAACATGGTTCGCGTGAAAGATATCTTTATACCGATTGAGAGCAATGTCAAACGCTACGACGCGATGAATAAAGGCATTTTCAAAGACCTAACCAAACATACTGATGTGATCCTGa                                                                                 >  1:1224431/1‑150 (MQ=255)

                                                                   ggggCTATACCCGGATTACGCAACGGCTGTCGATAACATGGTTCGCGTGAAAGATATCTTTATACCGATTGAGAGCAATGTCAAACGCTACGACGCGATGAATAAAGGCATTTTCAAAGACCTAACCAAACATACTGATGTGATCCTGaaa                                                                               <  1:847574/151‑1 (MQ=255)

                                                                   ggggCTATACCCGGATTACGCAACGGCTGTCGATAACATGGTTCGCGTGAAAGATATCTTTATACCGATTGAGAGCAATGTCAAACGCTACGACGCGATGAATAAAGGCATTTTCAAAGACCTAACCAAACATACTGATGTGATCCTGaa                                                                                >  1:370457/1‑150 (MQ=255)

                                                                            cccGGATTACGCAACGGCTGTCGATAACATGGTTCGCGTGAAAGATATCTTTATACCGATTGAGAGCAATGTCAAACGCTACGACGCGATGAATAAAGGCATTTTCAAAGACCTAACCAAACATACTGATGTGATCCTGAAAAAATCGTa                                                                       <  2:917539/150‑1 (MQ=255)

                                                                               ggATTACGCAACGGCTGTCGATAACATGGTTCGCGTGAAAGATATCTTTATACCGATTGAGAGCAATGTCAAACGCTACGACGCGATGAATAAAGGCATTTTCAAAGACCTAACCAAACATACTGATGTGATCCTGAAAAAATCGTATGaa                                                                   <  2:697288/151‑1 (MQ=255)

                                                                               ggATTACGCAACGGCTGTCGATAACATGGTTCGCGTGAAAGATATCTTTATACCGATTGAGAGCAATGTCAAACGCTACGACGCGATGAATAAAGGCATTTTCAAAGACCTAACCAAACATACTGATGTGATCCTGAAAAAATCGTATGa                                                                    >  1:583565/1‑150 (MQ=255)

                                                                                   tACGCAACGGCTGTCGATAACATGGTTCGCGTGAAAGATATCTTTATACCGATTGAGAGCAATGTCAAACGCTACGACGCGATGAATAAAGGCATTTTCAAAGACCTAACCAAACATACTGATGTGATCCTGAAAAAATCGTATGAAGTg                                                                >  1:432926/1‑150 (MQ=255)

                                                                                    aCGCAACGGCTGTCGATAACATGGTTCGCGTGAAAGATATCTTTATACCGATTGAGAGCAATGTCAAACGCTACGACGCGATGAATAAAGGCATTTTCAAAGACCTAACCAAACATACTGATGTGATCCTGAAAAAATCGTATGAAGTGa                                                               >  1:53264/1‑150 (MQ=255)

                                                                                    aCGCAACGGCTGTCGATAACATGGTTCGCGTGAAAGATATCTTTATACCGATTGAGAGCAATGTCAAACGCTACGACGCGATGAATAAAGGCATTTTCAAAGACCTAACCAAACATACTGATGTGATCCTGAAAAAATCGTATGAAGTGAt                                                              >  2:158453/1‑151 (MQ=255)

                                                                                     cGCAACGGCTGTCGATAACATGGTTCGCGTGAAAGATATCTTTATACCGATTGAGAGCAATGTCAAACGCTACGACGCGATGAATAAAGGCATTTTCAAAGACCTAACCAAACATACTGATGTGATCCTGAAAAAATCGTATGAAGTGAt                                                              <  1:685853/150‑1 (MQ=255)

                                                                                     cGCAACGGCTGTCGATAACATGGTTCGCGTGAAAGATATCTTTATACCGATTGAGAGCAATGTCAAACGCTACGACGCGATGAATAAAGGCATTTTCAAAGACCTAACCAAACATACTGATGTGATCCTGAAAAAATCGTATGAAGTGATg                                                             >  2:417108/1‑151 (MQ=255)

                                                                                     cGCAACGGCTGTCGATAACATGGTTCGCGTGAAAGATATCTTTATACCGATTGAGAGCAATGTCAAACGCTACGACGCGATGAATAAAGGCATTTTCAAAGACCTAACCAAACATACTGATGTGATCCTGAAAAAATCGTATGAAGTGATg                                                             >  1:703343/1‑151 (MQ=255)

                                                                                       cAACGGCTGTCGATAACATGGTTCGCGTGAAAGATATCTTTATACCGATTGAGAGCAATGTCAAACGCTACGACGCGATGAATAAAGGCATTTTCAAAGACCTAACCAAACATACTGATGTGATCCTGAAAAAATCGTATGAAGTGATGCa                                                           <  2:232457/151‑1 (MQ=255)

                                                                                         aCGGCTGTCGATAACATGGTTCGCGTGAAAGATATCTTTATACCGATTGAGAGCAATGTCAAACGCTACGACGCGATGAATAAAGGCATTTTCAAAGACCTAACCAAACATACTGATGTGATCCTGAAAAAATCGTATGAAGTGATGCa                                                           >  2:1015699/1‑149 (MQ=255)

                                                                                            gCTGTCGATAACATGGTTCGCGTGAAAGATATCTTTATACCGATTGAGAGCAATGTCAAACGCTACGACGCGATGAATAAAGGCATTTTCAAAGACCTAACCAAACATACTGATGTGATCCTGAAAAAATCGTATGAAGTGATGCAtgggg                                                      >  1:394125/1‑151 (MQ=255)

                                                                                            gCTGTCGATAACATGGTTCGCGTGAAAGATATCTTTATACCGATTGAGAGCAATGTCAAACGCTACGACGCGATGAATAAAGGCATTTTCAAAGACCTAACCAAACATACTGATGTGATCCTGAAAAAATCGTATGAAGTGATGCAtgggg                                                      >  2:984914/1‑151 (MQ=255)

                                                                                              tGTCGATAACATGGTTCGCGTGAAAGATATCTTTATACCGATTGAGAGCAATGTCAAACGCTACGACGCGATGAATAAAGGCATTTTCAAAGACCTAACCAAACATACTGATGTGATCCTGAAAAAATCGTATGAAGTGATGCAtgggga                                                     >  1:72616/1‑150 (MQ=255)

                                                                                                tCGATAACATGGTTCGCGTGAAAGATATCTTTATACCGATTGAGAGCAATGTCAAACGCTACGACGCGATGAATAAAGGCATTTTCAAAGACCTAACCAAACATACTGATGTGATCCTGAAAAAATCGTATGAAGTGATGCAtggggaatt                                                  >  2:388372/1‑151 (MQ=255)

                                                                                                 cGATAACATGGTTCGCGTGAAAGATATCTTTATACCGATTGAGAGCAATGTCAAACGCTACGACGCGATGAATAAAGGCATTTTCAAAGACCTAACCAAACATACTGATGTGATCCTGAAAAAATCGTATGAAGTGATGCAtggggaattg                                                 <  2:662044/151‑1 (MQ=255)

                                                                                                 cGATAACATGGTTCGCGTGAAAGATATCTTTATACCGATTGAGAGCAATGTCAAACGCTACGACGCGATGAATAAAGGCATTTTCAAAGACCTAACCAAACATACTGATGTGATCCTGAAAAAATCGTATGAAGTGATGCAtggggaatt                                                  <  1:545048/150‑1 (MQ=255)

                                                                                                  gATAACATGGTTCGCGTGAAAGATATCTTTATACCGATTGAGAGCAATGTCAAACGCTACGACGCGATGAATAAAGGCATTTTCAAAGACCTAACCAAACATACTGATGTGATCCTGAAAAAATCGTATGAAGTGATGCAtggggaattgg                                                >  1:507809/1‑151 (MQ=255)

                                                                                                  gATAACATGGTTCGCGTGAAAGATATCTTTATACCGATTGAGAGCAATGTCAAACGCTACGACGCGATGAATAAAGGCATTTTCAAAGACCTAACCAAACATACTGATGTGATCCTGAAAAAATCGTATGAAGTGATGCAtggggaattgg                                                >  2:799386/1‑151 (MQ=255)

                                                                                                   aTAACATGGTTCGCGTGAAAGATATCTTTATACCGATTGAGAGCAATGTCAAACGCTACGACGCGATGAATAAAGGCATTTTCAAAGACCTAACCAAACATACTGATGTGATCCTGAAAAAATCGTATGAAGTGATGCAtggggaattggg                                               <  2:4206/151‑1 (MQ=255)

                                                                                                       cATGGTTCGCGTGAAAGATATCTTTATACCGATTGAGAGCAATGTCAAACGCTACGACGCGATGAATAAAGGCATTTTCAAAGACCTAACCAAACATACTGATGTGATCCTGAAAAAATCGTATGAAGTGATGCAtggggaattggggaag                                           <  2:167800/151‑2 (MQ=255)

                                                                                                        aTGGTTCGCGTGAAAGATATCTTTATACCGATTGAGAGCAATGTCAAACGCTACGACGCGATGAATAAAGGCATTTTCAAAGACCTAACCAAACATACTGATGTGATCCTGAAAAAATCGTATGAAGTGATGCATGGGGAATTGGGGAAtg                                          >  1:411744/1‑151 (MQ=255)

                                                                                                          ggTTCGCGTGAAAGATATCTTTATACCGATTGAGAGCAATGTCAAACGCTACGACGCGATGAATAAAGGCATTTTCAAAGACCTAACCAAACATACTGATGTGATCCTGAAAAAATCGTATGAAGTGATGCATGGGGAATTGGGGAAtgtg                                        >  2:1051989/1‑151 (MQ=255)

                                                                                                                cgTGAAAGATATCTTTATACCGATTGAGAGCAATGTCAAACGCTACGACGCGATGAATAAAGGCATTTTCAAAGACCTAACCAAACATACTGATGTGATCCTGAAAAAATCGTATGAAGTGATGCATGGGGAATTGGGGAATGTGGATTCg                                  >  1:39045/1‑151 (MQ=255)

                                                                                                                   gAAAGATATCTTTATACCGATTGAGAGCAATGTCAAACGCTACGACGCGATGAATAAAGGCATTTTCAAAGACCTAACCAAACATACTGATGTGATCCTGAAAAAATCGTATGAAGTGATGCATGGGGAATTGGGGAATGTGGATTCGATc                               >  2:718863/1‑151 (MQ=255)

                                                                                                                    aaaGATATCTTTATACCGATTGAGAGCAATGTCAAACGCTACGACGCGATGAATAAAGGCATTTTCAAAGACCTAACCAAACATACTGATGTGATCCTGAAAAAATCGTATGAAGTGATGCATGGGGAATTGGGGAATGTGGATTCGATcc                              >  1:841147/1‑151 (MQ=255)

                                                                                                                     aaGATATCTTTATACCGATTGAGAGCAATGTCAAACGCTACGACGCGATGAATAAAGGCATTTTCAAAGACCTAACCAAACATACTGATGTGATCCTGAAAAAATCGTATGAAGTGATGCATGGGGAATTGGGGAATGTGGATTCGATCCa                             <  2:251992/151‑1 (MQ=255)

                                                                                                                      aGATATCTTTATACCGATTGAGAGCAATGTCAAACGCTACGACGCGATGAATAAAGGCATTTTCAAAGACCTAAAAAAACATACTGATGTGATCCTGAGAAAATCGTATGAAGGGATGCATGGGGGATTGGGGAATGAGGCGTCGa                                 >  1:634246/1‑146 (MQ=255)

                                                                                                                           tCTTTATACCGATTGAGAGCAATGTCAAACGCTACGACGCGATGAATAAAGGCATTTTCAAAGACCTAACCAAACATACTGATGTGATCCTGAAAAAATCGTATGAAGTGATGCATGGGGAATTGGGGAATGTGGATTCGATCCAGAGCTg                       >  1:534228/1‑151 (MQ=255)

                                                                                                                              ttATACCGATTGAGAGCAATGTCAAACGCTACGACGCGATGAATAAAGGCATTTTCAAAGACCTAACCAAACATACTGATGTGATCCTGAAAAAATCGTATGAAGTGATGCATGGGGAATTGGGGAATGTGGATTCGATCCAGAGCTg                       <  1:16713/148‑1 (MQ=255)

                                                                                                                               tataCCGATTGAGAGCAATGTCAAACGCTACGACGCGATGAATAAAGGCATTTTCAAAGACCTAACCAAACATACTGATGTGATCCTGAAAAAATCGTATGAAGTGATGCATGGGGAATTGGGGAATGTGGATTCGATCCAGAGCTGGTc                    <  1:477854/150‑1 (MQ=255)

                                                                                                                                ataCCGATTGAGAGCAATGTCAAACGCTACGACGCGATGAATAAAGGCATTTTCAAAGACCTAACCAAACATACTGATGTGATCCTGAAAAAATCGTATGAAGTGATGCATGGGGAATTGGGGAATGTGGATTCGATCCAGAGCTGGTCg                   >  2:517066/1‑150 (MQ=255)

                                                                                                                                 taCCGATTGAGAGCAATGTCAAACGCTACGACGCGATGAATAAAGGCATTTTCAAAGACCTAACCAAACATACTGATGTGATCCTGAAAAAATCGTATGAAGTGATGCATGGGGAATTGGGGAATGTGGATTCGATCCAGAGCTGGTCGa                  >  2:682205/1‑150 (MQ=255)

                                                                                                                                    cGATTGAGAGCAATGTCAAACGCTACGACGCGATGAATAAAGGCATTTTCAAAGACCTAACCAAACATACTGATGTGATCCTGAAAAAATCGTATGAAGTGATGCATGGGGAATTGGGGAATGTGGATTCGATCCAGAGCTGGTCGAATGc              >  1:291673/1‑151 (MQ=255)

                                                                                                                                    cGATTGAGAGCAATGTCAAACGCTACGACGCGATGAATAAAGGCATTTTCAAAGACCTAACCAAACATACTGATGTGATCCTGAAAAAATCGTATGAAGTGATGCATGGGGAATTGGGGAATGTGGATTCGATCCAGAGCTGGTCGAATGc              >  1:507816/1‑151 (MQ=255)

                                                                                                                                            agCAATGTCAAACGCTACGACGCGATGAATAAAGGCATTTTCAAAGACCTAACCAAACATACTGATGTGATCCTGAAAAAATCGTATGAAGTGATGCATGGGGAATTGGGGAATGTGGATTCGATCCAGAGCTGGTCGAATGCGTAAGTGa      <  1:739591/151‑1 (MQ=255)

                                                                                                                                            agCAATGTCAAACGCTACGACGCGATGAATAAAGGCATTTTCAAAGACCTAACCAAACATACTGATGTGATCCTGAAAAAATCGTATGAAGTGATGCATGGGGAATTGGGGAATGTGGATTCGATCCAGAGCTGGTCGAATGCGTAAGTGa      <  1:133155/151‑1 (MQ=255)

                                                                                                                                             gCAATGTCAAACGCTACGACGCGATGAATAAAGGCATTTTCAAAGACCTAACCAAACATACTGATGTGATCCTGAAAAAATCGTATGAAGTGATGCATGGGGAATTGGGGAATGTGGATTCGATCCAGAGCTGGTCGAATGCGTAAGTg       >  1:1052939/1‑149 (MQ=255)

                                                                                                                                               aaTGTCAAACGCTACGACGCGATGAATAAAGGCATTTTCAAAGACCTAACCAAACATACTGATGTGATCCTGAAAAAATCGTATGAAGTGATGCATGGGGAATTGGGGAATGTGGATTCGATCCAGAGCTGGTCGAATGCGTAAGTGAgg    >  2:719426/1‑150 (MQ=255)

                                                                                                                                                aTGTCAAACGCTACGACGCGATGAATAAAGGCATTTTCAAAGACCTAACCAAACATACTGATGTGATCCTGAAAAAATCGTATGAAGTGATGCATGGGGAATTGGGGAATGTGGATTCGATCCAGAGCTGGTCGAATGCGTAAGTGAGGaa  <  2:830733/151‑1 (MQ=255)

CGGCACGACGTAACGCCATTAACGGTTGTGCAAGCCTGGGGGCAGCGATTAATACAGCGGTAGGTCTGGGGCTATACCCGGATTACGCAACGGCTGTCGATAACATGGTTCGCGTGAAAGATATCTTTATACCGATTGAGAGCAATGCCAAACGCTACGACGCGATGAATAAAGGCATTTTCAAAGACCTAACCAAACATACTGATGTGATCCTGAAAAAATCGTATGAAGTGATGCATGGGGAATTGGGGAATGTGGATTCGATCCAGAGCTGGTCGAATGCGTAAGTGAGGAA  >  NC_000913/2903088‑2903382

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 16 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A