Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F50 I2 R1 121 82.0 2593086 97.7% 2533445 150.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,946,466 T→C H238R (CAC→CGC)  mltA ← membrane‑bound lytic murein transglycosylase A

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,946,4660TC100.0% 289.8 / NA 77H238R (CAC→CGC) mltAmembrane‑bound lytic murein transglycosylase A
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (32/45);  total (32/45)

GGAATAATGGAACGATCAGAGGCAACTGACGCGCGACCAACCAGCGGCACCGCACTTGCCCCTTTCACCGGAGCAAAAGATTGCGGTTTAAAGAAGACGAAAGACGGGTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGTGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATATCTTCTTTTTTCACTTCGCCACGGTCGATCAGCACCTTACCAATGCTGCGATAGGCATGACCGTTTTTCCCTGCATAGCTGAAAAAGTTAAGCGGACTGCCATC  >  NC_000913/2946322‑2946608
                                                                                                                                                |                                                                                                                                              
ggAATAATGGAACGATCAGAGGCAACTGACGCGCGACCAACCAGCGGCACCGCACTTGCCCCTTTCACCGGAGCAAAAGATTGCGGTTTAAAGAAGACGAAAGACGGGTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGttt                                                                                                                                          >  1:1070542/1‑151 (MQ=255)
   ataatGGAACGATCAGAGGCAACTGACGCGCGACCAACCAGCGGCACCGCACTTGCCCCTTTCACCGGAGCAAAAGATTGCGGTTTAAAGAAGACGAAAGACGGGTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGc                                                                                                                                       <  2:925886/151‑1 (MQ=255)
     aatGGAACGATCAGAGGCAACTGACGCGCGACCAACCAGCGGCACCGCACTTGCCCCTTTCACCGGAGCAAAAGATTGCGGTTTAAAGAAGACGAAAGACGGGTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGccc                                                                                                                                     <  1:50207/151‑1 (MQ=255)
        ggAACGATCAGAGGCAACTGACGCGCGACCAACCAGCGGCACCGCACTTGCCCCTTTCACCGGAGCAAAAGATTGCGGTTTAAAGAAGACGAAAGACGGGTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCa                                                                                                                                   <  2:300277/150‑1 (MQ=255)
        ggAACGATCAGAGGCAACTGACGCGCGACCAACCAGCGGCACCGCACTTGCCCCTTTCACCGGAGCAAAAGATTGCGGTTTAAAGAAGACGAAAGACGGGTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCa                                                                                                                                   <  2:661292/150‑1 (MQ=255)
                cAGAGGCAACTGACGCGCGACCAACCAGCGGCACCGCACTTGCCCCTTTCACCGGAGCAAAAGATTGCGGTTTAAAGAAGACGAAAGACGGGTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAAt                                                                                                                          <  1:979743/151‑1 (MQ=255)
                 agagGCAACTGACGCGCGACCAACCAGCGGCACCGCACTTGCCCCTTTCACCGGAGCAAAAGATTGCGGTTTAAAGAAGACGAAAGACGGGTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATc                                                                                                                         <  1:1203551/151‑1 (MQ=255)
                        aCTGACGCGCGACCAACCAGCGGCACCGCACTTGCCCCTTTCACCGGAGCAAAAGATTGCGGTTTAAAGAAGACGAAAGACGGGTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGc                                                                                                                   >  2:504271/1‑150 (MQ=255)
                        aCTGACGCGCGACCAACCAGCGGCACCGCACTTGCCCCTTTCACCGGAGCAAAAGATTGCGGTTTAAAGAAGACGAAAGACGGGTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCa                                                                                                                  <  1:1124635/151‑1 (MQ=255)
                           gACGCGCGACCAACCAGCGGCACCGCACTTGCCCCTTTCACCGGAGCAAAAGATTGCGGTTTAAAGAAGACGAAAGACGGGTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCAt                                                                                                                 <  2:299129/149‑1 (MQ=255)
                           gACGCGCGACCAACCAGCGGCACCGCACTTGCCCCTTTCACCGGAGCAAAAGATTGCGGTTTAAAGAAGACGAAAGACGGGTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCAt                                                                                                                 <  1:349256/149‑1 (MQ=255)
                             cgcgcgACCAACCAGCGGCACCGCACTTGCCCCTTTCACCGGAGCAAAAGATTGCGGTTTAAAGAAGACGAAAGACGGGTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGAc                                                                                                             >  1:31077/1‑151 (MQ=255)
                              gcgcgACCAACCAGCGGCACCGCACTTGCCCCTTTCACCGGAGCAAAAGATTGCGGTTTAAAGAAGACGAAAGACGGGTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACa                                                                                                            <  1:11295/151‑1 (MQ=255)
                                  gACCAACCAGCGGCACCGCACTTGCCCCTTTCACCGGAGCAAAAGATTGCGGTTTAAAGAAGACGAAAGACTGGTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGCTCCAGTGACGAATCGCCTGCATCGACATAtc                                                                                                        <  1:467990/151‑1 (MQ=255)
                                  gACCAACCAGCGGCACCGCACTTGCCCCTTTCACCGGAGCAAAAGATTGCGGTTTAAAGAAGACGAAAGACGGGTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATAtc                                                                                                        >  2:625250/1‑151 (MQ=255)
                                        ccaGCGGCACCGCACTTGCCCCTTTCACCGGAGCAAAAGATTGCGGTTTAAAGAAGACGAAAGACGGGTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATATCTTCttt                                                                                                  >  2:195905/1‑151 (MQ=255)
                                        ccaGCGGCACCGCACTTGCCCCTTTCACCGGAGCAAAAGATTGCGGTTTAAAGAAGACGAAAGACGGGTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATATCTTCttt                                                                                                  <  1:1269393/151‑1 (MQ=255)
                                        ccaGCGGCACCGCACTTGCCCCTTTCACCGGAGCAAAAGATTGCGGTTTAAAGAAGACGAAAGACGGGTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATATCTTCttt                                                                                                  <  1:421117/151‑1 (MQ=255)
                                         caGCGGCACCGCACTTGCCCCTTTCACCGGAGCAAAAGATTGCGGTTTAAAGAAGACGAAAGACGGGTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATATCTTCtttt                                                                                                 >  1:939749/1‑151 (MQ=255)
                                         caGCGGCACCGCACTTGCCCCTTTCACCGGAGCAAAAGATTGCGGTTTAAAGAAGACGAAAGACGGGTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATATCTTCtttt                                                                                                 <  2:1258124/151‑1 (MQ=255)
                                           gCGGCACCGCACTTGCCCCTTTCACCGGAGCAAAAGATTGCGGTTTAAAGAAGACGAAAGACGGGTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATATCTTCtttttt                                                                                               <  2:1271999/151‑1 (MQ=255)
                                           gCGGCACCGCACTTGCCCCTTTCACCGGAGCAAAAGATTGCGGTTTAAAGAAGACGAAAGACGGGTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATATCTTCtttttt                                                                                               <  1:52865/151‑1 (MQ=255)
                                             ggCACCGCACTTGCCCCTTTCACCGGAGCAAAAGATTGCGGTTTAAAGAAGACGAAAGACGGGTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATATCTTCTTTTTTCa                                                                                             <  2:495681/151‑1 (MQ=255)
                                                 ccGCACTTGCCCCTTTCACCGGAGCAAAAGATTGCGGTTTAAAGAAGACGAAAGACGGGTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATATCTTCTTTTTTCACtt                                                                                          <  1:800908/150‑1 (MQ=255)
                                                     aCTTGCCCCTTTCACCGGAGCAAAAGATTGCGGTTTAAAGAAGACGAAAGACGGGTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATATCTTCTTTTTTCACTTCGcc                                                                                      >  1:466966/1‑150 (MQ=255)
                                                        tGCCCCTTTCACCGGAGCAAAAGATTGCGGTTTAAAGAAGACGAAAGACGGGTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATATCTTCTTTTTTCACTTCGCCAc                                                                                    <  2:827376/149‑1 (MQ=255)
                                                          tcccTTTCACCGGGGCAATAGATTGCGGCTTAAAGAAGCCGAAAGACGGGTTCTGTTCCAGGAGATCGAGTACCTCGGCGTCACTTCGAGTTTCGCCCCAGTGACGAATCGCCTGCAACGGCATATCTTCTTTTCTCACTTCGCCACg                                                                                   >  1:194536/2‑148 (MQ=255)
                                                          ccccTTTCACCGGAGCAAAAGATTGCGGTTTAAAGAAGACGAAAGACGGGTTCTATTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATATCTTCTTTTTTCACTTCGCCACGGTc                                                                                <  2:704029/151‑1 (MQ=255)
                                                           cccTTTCACCGGAGCAAAAGATTGCGGTTTAAAGAAGACGAAAGACGGGTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATATCTTCTTTTTTCACTTCGCCACGGTCg                                                                               >  1:855854/1‑151 (MQ=255)
                                                               ttCACCGGAGCAAAAGATTGCGGTTTAAAGAAGACGAAAGACGGGTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATATCTTCTTTTTTCACTTCGCCACGGTCGAt                                                                             <  2:1075250/149‑1 (MQ=255)
                                                               ttCACCGGAGCAAAAGATTGCGGTTTAAAGAAGACGAAAGACGGGTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATATCTTCTTTTTTCACTTCGCCACGGTCGAt                                                                             <  2:827392/149‑1 (MQ=255)
                                                                 cACCGGAGCAAAAGATTGCGGTTTAAAGAAGACGAAAGACGGGTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATATCTTCTTTTTTCACTTCGCCACGGTCGATCAg                                                                          <  2:327260/150‑1 (MQ=255)
                                                                  aCCGGAGCAAAAGATTGCGGTTTAAAGAAGACGAAAGACGGGTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATATCTTCTTTTTTCACTTCGCCACGGTCGATCAGc                                                                         >  1:399170/1‑150 (MQ=255)
                                                                   ccGGAGCAAAAGATTGCGGTTTAAAGAAGACGAAAGACGGGTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATATCTTCTTTTTTCACTTCGCCACGGTCGATCAGCAc                                                                       >  1:55371/1‑151 (MQ=255)
                                                                       aGCAAAAGATTGCGGTTTAAAGAAGACGAAAGACGGGTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATATCTTCTTTTTTCACTTCGCCACGGTCGATCAGCACCTTa                                                                   <  2:224626/151‑1 (MQ=255)
                                                                          aaaaGATTGCGGTTTAAAGAAGACGAAAGACGGGTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATATCTTCTTTTTTCACTTCGCCACGGTCGATCAGCACCTTAcc                                                                 >  2:1063376/1‑150 (MQ=255)
                                                                             aGATTGCGGTTTAAAGAAGACGAAAGACGGGTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATATCTTCTTTTTTCACTTCGCCACGGTCGATCAGCACCTTACCAAtg                                                             >  2:122140/1‑151 (MQ=255)
                                                                             aGATTGCGGTTTAAAGAAGACGAAAGACGGGTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATATCTTCTTTTTTCACTTCGCCACGGTCGATCAGCACCTTACCAAtg                                                             <  1:602360/151‑1 (MQ=255)
                                                                               aTTGCGGTTTAAAGAAGACGAAAGACGGGTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATATCTTCTTTTTTCACTTCGCCACGGTCGATCAGCACCTTACCAAtgct                                                           <  1:1069612/151‑1 (MQ=255)
                                                                               aTTGCGGTTTAAAGAAGACGAAAGACGGGTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATATCTTCTTTTTTCACTTCGCCACGGTCGATCAGCACCTTACCAAtgct                                                           <  2:789319/151‑1 (MQ=255)
                                                                                 tGCGGTTTAAAGAAGACGAAAGACGGGTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATATCTTCTTTTTTCACTTCGCCACGGTCGATCAGCACCTTACCAAtgctgc                                                         >  1:456837/1‑151 (MQ=255)
                                                                                 tGCGGTTTAAAGAAGACGAAAGACGGGTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATATCTTCTTTTTTCACTTCGCCACGGTCGATCAGCACCTTACCAAtgctg                                                          <  2:189280/150‑1 (MQ=255)
                                                                                  gCGGTTTAAAGAAGACGAAAGACGGGTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATATCTTCTTTTTTCACTTCGCCACGGTCGATCAGCACCTTGCCAAtgctgc                                                         <  1:200569/150‑1 (MQ=255)
                                                                                   cGGTTTAAAGAAGACGAAAGACGGGTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATATCTTCTTTTTTCACTTCGCCACGGTCGATCAGCACCTTACCAATGCTGCg                                                        >  2:856614/1‑150 (MQ=255)
                                                                                    ggTTTAAAGAAGACGAAAGACGGGTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATATCTTCTTTTTTCACTTCGCCACGGTCGATCAGCACCTTACCAATGCTGCGAt                                                      <  2:268115/151‑1 (MQ=255)
                                                                                    ggTTTAAAGAAGACGAAAGACGGGTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATATCTTCTTTTTTCACTTCGCCACGGTCGATCAGCACCTTACCAATGCTGCGAt                                                      <  1:1212905/151‑1 (MQ=255)
                                                                                     gTTTAAAGAAGACGAAAGACGGGTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATATCTTCTTTTTTCACTTCGCCACGGTCGATCAGCACCTTACCAATGCTGCGAt                                                      >  2:618022/1‑150 (MQ=255)
                                                                                        tAAAGAAGACGAAAGACGGGTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATATCTTCTTTTTTCACTTCGCCACGGTCGATCAGCACCTTACCAATGCTGCGATAGGc                                                  >  2:1273671/1‑151 (MQ=255)
                                                                                         aaaGAAGACGAAAGACGGGTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATATCTTCTTTTTTCACTTCGCCACGGTCGATCAGCACCTTACCAATGCTGCGATAGGc                                                  >  1:266378/1‑150 (MQ=255)
                                                                                           agaagaCGAAAGACGGGTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATATCTTCTTTTTTCACTTCGCCACGGTCGATCAGCACCTTACCAATGCTGCGATAGGCATg                                               >  1:1124368/1‑151 (MQ=255)
                                                                                            gaagaCGAAAGACGGGTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATATCTTCTTTTTTCACTTCGCCACGGTCGATCAGCACCTTACCAATGCTGCGATAGGCATGa                                              <  2:114547/151‑1 (MQ=255)
                                                                                             aagaCGAAAGACGGGTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATATCTTCTTTTTTCACTTCGCCACGGTCGATCAGCACCTTACCAATGCTGCGATAGGCATGAc                                             >  2:1005991/1‑151 (MQ=255)
                                                                                                aCGAAAGACGGGTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATATCTTCTTTTTTCACTTCGCCACGGTCGATCAGCACCTTACCAATGCTGCGATAGGCATGACCg                                           >  1:115826/1‑150 (MQ=255)
                                                                                                 cGAAAGACGGGTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATATCTTCTTTTTTCACTTCGCCACGGTCGATCAGCACCTTACCAATGCTGCGATAGGCATGACCGtt                                         <  2:950533/151‑1 (MQ=255)
                                                                                                    aaGACGGGTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATATCTTCTTTTTTCACTTCGCCACGGTCGATCAGCTCCTTACCAATGCTGCGATAGGCATGACCGtttt                                       <  1:1103210/150‑1 (MQ=255)
                                                                                                    aaGACGGGTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATATCTTCTTTTTTCACTTCGCCACGGTCGATCAGCACCTTACCAATGCTGCGATAGGCATGACCGttttt                                      >  1:940055/1‑151 (MQ=255)
                                                                                                      gACGGGTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATATCTTCTTTTTTCACTTCGCCACGGTCGATCAGCACCTTACCAATGCTGCGATAGGCATGACCGTTTTTcc                                    >  1:45513/1‑151 (MQ=255)
                                                                                                      gACGGGTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATATCTTCTTTTTTCACTTCGCCACGGTCGATCAGCACCTTACCAATGCTGCGATAGGCATGACCGTTTTTcc                                    >  2:908983/1‑151 (MQ=255)
                                                                                                        ggggCTCTGTTCCAGCAGCACGCGAACCTCGGCTCCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATATCTTCTTTTTTCACTTCGCCACGGTCGATCAGCACCTTACCAATGCTGCGATAGGCATGACCGTTTTTccc                                   >  1:434673/2‑150 (MQ=255)
                                                                                                         gggTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATATCTTCTTTTTTCACTTCGCCACGGTCGATCAGCACCTTACCAATGCTGCGATAGGCATGACCGTTTTTCCCTg                                 >  2:56987/1‑151 (MQ=255)
                                                                                                          ggTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATATCTTCTTTTTTCACTTCGCCACGGTCGATCAGCACCTTACCAATGCTGCGATAGGCATGACCGTTTTTCCCTGc                                <  1:533064/151‑1 (MQ=255)
                                                                                                           gTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATATCTTCTTTTTTCACTTCGCCACGGTCGATCAGCACCTTACCAATGCTGCGATAGGCATGACCGTTTTTCCCTGCa                               <  1:1234325/151‑1 (MQ=255)
                                                                                                             tCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATATCTTCTTTTTTCACTTCGCCACGGTCGATCAGCACCTTACCAATGCTGCGATAGGCATGACCGTTTTTCCCTGCAt                              >  2:1082546/1‑150 (MQ=255)
                                                                                                               tGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATATCTTCTTTTTTCACTTCGCCACGGTCGATCAGCACCTTACCAATGCTGCGATAGGCATGACCGTTTTTCCCTGCATAGc                           >  1:1158759/1‑151 (MQ=255)
                                                                                                                   ccAGCAGCTCGCGAGCCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATATCTTCTTTTTTCACTTCGCCACGGTCGATCAGCACCTTACCAATGCTGCGATAGGCATGACCGTTTTTCCCTGCATAGCTg                         <  1:179584/149‑1 (MQ=255)
                                                                                                                       cagcTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCAGGGACGAATCGCCTGCATCGACATATCTTCTTTTTTCACTTCGCCACGGTCGATCAGCACCTTACCAATGCTGCGATAGGCATGACCGTTTTTCCCTGCATAGCTGaaaaa                    <  1:748295/150‑1 (MQ=255)
                                                                                                                        atcTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATATCTTCTTTTTTCACTTCGCCACGGTCGATCAGCACCTTACCAATGCTGCGATAGGCATGACCGTTTTTCCCTGCATAGCTGAAAAAGt                  >  2:750481/3‑151 (MQ=255)
                                                                                                                         gcTCGCGAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATATCTTCTTTTTTCACTTCGCCACGGTCGATCAGCACCTTACCAATGCTGCGATAGGCATGACCGTTTTTCCCTGCATAGCTGAAAAAGtt                 <  1:1095270/151‑1 (MQ=255)
                                                                                                                            cgcgAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATATCTTCTTTTTTCACTTCGCCACGGTCGATCAGCACCTTACCAATGCTGCGATAGGCATGACCGTTTTTCCCTGCATAGCTGAAAAAGTTaa               <  1:1046469/150‑1 (MQ=255)
                                                                                                                            cgcgAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATATCTTCTTTTTTCACTTCGCCACGGTCGATCAGCACCTTACCAATGCTGCGATAGGCATGACCGTTTTCCCCTGCATAGCTGAAAAAGTTa                <  1:984034/149‑1 (MQ=255)
                                                                                                                             gcgAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATATCTTCTTTTTTCACTTCGCCACGGTCGATCAGCACCTTACCAATGCTGCGATAGGCATGACCGTTTTTCCCTGCATAGCTGAAAAAGTTAAGc             >  2:436414/1‑151 (MQ=255)
                                                                                                                              cgAACCTCGGCTTCATTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCCACATATCTTCTTTTTTCACTTCGCCACGGTCGATCAGCACCTTACCAATGCTGCGATAGGCCTGACCGTTTTTCCCTGCATCGCTGAAAAAGTTa                <  1:752677/147‑1 (MQ=255)
                                                                                                                               gAACCTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATATCTTCTTTTTTCACTTCGCCACGATCGATCAGCACCTTACCAATGCTGCGATAGGCATGACCGTTTTTCCCTGCATAGCTGAAAAAGTTAAGCgg           >  2:660860/1‑151 (MQ=255)
                                                                                                                                  ccTCGGCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGGCTGCATCGACATATCTTCATTTTTCACTTCGCCGCGGTCGATCAGCACCTTACCAATGCTGCGATAGGCATGACCGTTTTTCCCTGCATAGCTGAAAAAGTTAAGCGGaat        <  1:1035008/151‑3 (MQ=255)
                                                                                                                                      ggCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATATCTTCTTTTTTCACTTCGCCACGGTCGATCAGCACCTTACCAATGCTGCGATAGGCATGACCGTTTTTCCCTGCATAGCTGAAAAAGTTAAGCGGACTGCCa    <  1:221804/151‑1 (MQ=255)
                                                                                                                                       gCTTCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATATCTTCTTTTTTCACTTCGCCACGGTCGATCAGCACCTTACCAATGCTGCGATAGGCATGACCGTTTTTCCCTGCATAGCTGAAAAAGTTAAGCGGACTGCCAt   >  1:934170/1‑151 (MQ=255)
                                                                                                                                          tCACTGCGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATATCTTCTTTTTTCACTTCGCCACGGTCGATCAGCACCTTACCAATGCTGCGATAGGCATGACCGTTTTTCCCTGCATAGCTGAAAAAGTTAAGCGGACTGCCATc  <  1:367126/149‑1 (MQ=255)
                                                                                                                                                |                                                                                                                                              
GGAATAATGGAACGATCAGAGGCAACTGACGCGCGACCAACCAGCGGCACCGCACTTGCCCCTTTCACCGGAGCAAAAGATTGCGGTTTAAAGAAGACGAAAGACGGGTTCTGTTCCAGCAGCTCGCGAACCTCGGCTTCACTGTGTGTTTCGCCCCAGTGACGAATCGCCTGCATCGACATATCTTCTTTTTTCACTTCGCCACGGTCGATCAGCACCTTACCAATGCTGCGATAGGCATGACCGTTTTTCCCTGCATAGCTGAAAAAGTTAAGCGGACTGCCATC  >  NC_000913/2946322‑2946608

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A