Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F50 I2 R1 121 82.0 2593086 97.7% 2533445 150.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,430,410 A→G C143C (TGT→TGC)  aroE ← dehydroshikimate reductase, NAD(P)‑binding

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,430,4100AG97.2% 258.8 / NA 71C143C (TGT→TGC) aroEdehydroshikimate reductase, NAD(P)‑binding
Reads supporting (aligned to +/- strand):  ref base A (0/0);  major base G (36/33);  minor base T (0/2);  total (36/35)
Fisher's exact test for biased strand distribution p-value = 2.39e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01

CCACTGGATGTTGCATTAATAATGAGATCAAACTCATGACCTTCCAGTTCGTCCATACTCAACGCCTGAATACTGCCAGTGTGCGCAAACAATTTAGCCAACTCTTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCGCCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAGCCTACACCATCGGTATTGTCACCCAGCAGGCG  >  NC_000913/3430267‑3430556
                                                                                                                                               |                                                                                                                                                  
ccACTGGATGTTGCATTAATAATGAGATCATACTCATGACCTTCCAGTTCGTCCATACTCAACGCCTGAATACTGCCAGTGTGCGCAAACAATTTAGCCAACTCTTCCGCGCGGGATACCGTCCGTTTAGTTATTGTCACCGCGCAGTcaa                                                                                                                                             <  1:769470/151‑3 (MQ=255)
         gTTGCATTAATAATGAGATCAAACTCATGACCTTCCAGTTCGTCCATACTCAACGCCTGAATACTGCCAGTGTGCGCAAACAATTTAGCCAACTCTTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCGCAGCCCAGGGAAAgg                                                                                                                                     <  2:1049165/150‑1 (MQ=255)
                 aataatGAGATCAAACTCATGACCTTCCAGTTCGTCCATACTCAACGCCTGAATACTGCCAGTGTGCGCAAACAATTTAGCCAACTCTTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCagt                                                                                                                            >  2:1160357/1‑151 (MQ=255)
                 aataatGAGATCAAACTCATGACCTTCCAGTTCGTCCATACTCAACGCCTGAATACTGCCAGTGTGCGCAAACAATTTAGCCAACTCTTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCag                                                                                                                             <  1:359641/150‑1 (MQ=255)
                  ataatGAGATCAAACTCATGACCTTCCAGTTCGTCCATACTCAACGCCTGAATACTGCCAGTGTGCGCAAACAATTTAGCCAACTCTTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCagta                                                                                                                           <  2:948420/151‑1 (MQ=255)
                      tGAGATCAAACTCATGACCTTCCAGTTCGTCCATACTCAACGCCTGAATACTGCCAGTGTGCGCAAACAATTTAGCCAACTCTTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTAc                                                                                                                       >  2:696754/1‑151 (MQ=255)
                        agaTCAAACTCATGACCTTCCATTTCGTCCATACTCAACGCCTGAATACTGCCAGTGTGCGCAAACAATTTAGCCAACTCTTCCGCGCGGGATTCCGTCCGATTAGTTATTGTCACCGCGCAGTCCAGGGAAAGGAGTTGCAGTGGTAcg                                                                                                                      <  1:966590/150‑1 (MQ=255)
                         gaTCAAACTCATGACCTTCCAGTTCGTCCATACTCAACGCCTGAATACTGCCAGTGTGCGCAAACAATTTAGCCAACTCTTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTAcgcc                                                                                                                    >  1:37468/1‑151 (MQ=255)
                           tCAAACTCATGACCTTCCAGTTCGTCCATACTCAACGCCTGAATACTGCCAGTGTGCGCAAACAATTTAGCCAACTCTTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTAcgccgc                                                                                                                  >  1:566233/1‑151 (MQ=255)
                           tCAAACTCATGACCTTCCAGTTCGTCCATACTCAACGCCTGAATACTGCCAGTGTGCGCAAACAATTTAGCCAACTCTTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTAcgccgc                                                                                                                  >  1:511830/1‑151 (MQ=255)
                            cAAACTCATGACCTTCCAGTTCGTCCATACTCAACGCCTGAATACTGCCAGTGTGCGCAAACAATTTAGCCAACTCTTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTACGCcgcg                                                                                                                 >  2:577847/1‑151 (MQ=255)
                              aaCTCATGACCTTCCAGTTCGTCCATACTCAACGCCTGAATACTGCCAGTGTGCGCAAACAATTTAGCCAACTCTTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTACGCcgcg                                                                                                                 >  2:178582/1‑149 (MQ=255)
                              aaCTCATGACCTTCCAGTTCGTCCATACTCAACGCCTGAATACTGCCAGTGTGCGCAAACAATTTAGCCAACTCTTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTACGCcgcg                                                                                                                 >  2:746543/1‑149 (MQ=255)
                               aCTCATGACCTTCCAGTTCGTCCATACTCAACGCCTGAATACTGCCAGTGTGCGCAAACAATTTAGCCAACTCTTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTACGCcgcg                                                                                                                 >  1:909342/1‑148 (MQ=255)
                                 tCATGACCTTCCAGTTCGTCCATACTCAACGCCTGAATACTGCCAGTGTGCGCAAACAATTTAGCCAACTCTTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATg                                                                                                            >  2:171285/1‑151 (MQ=255)
                                     gACCTTCCAGTTCGTCCATACTCAACGCCTGAATACTGCCAGTGTGCGCAAACAATTTAGCCAACTCTTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTcc                                                                                                        >  2:1269465/1‑151 (MQ=255)
                                     gACCTTCCAGTTCGTCCATACTCAACGCCTGAATACTGCCAGTGTGCGCAAACAATTTAGCCAACTCTTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTc                                                                                                         <  1:999780/150‑1 (MQ=255)
                                      aCCTTCCAGTTCGTCCATACTCAACGCCTGAATACTGCCAGTGTGCGCAAACAATTTAGCCAACTCTTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTcc                                                                                                        >  1:282213/1‑150 (MQ=255)
                                         ttCCAGTTCGTCCATACTCAACGCCTGAATACTGCCAGTGTGCGCAAACAATTTAGCCAACTCTTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTccacc                                                                                                     >  1:1144992/1‑150 (MQ=255)
                                            cAGTTCGTCCATACTCAACGCCTGAATACTGCCAGTGTGCGCAAACAATTTAGCCAACTCTTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAgcg                                                                                                 >  2:839677/1‑151 (MQ=255)
                                             aGTTCGTCCATACTCAACGCCTGAATACTGCCAGTGTGCGCAAACAATTTAGCCAACTCTTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAgcgc                                                                                                <  1:392127/151‑1 (MQ=255)
                                              gTTCGTCCATACTCAACGCCTGAATACTGCCAGTGTGCGCAAACAATTTAGCCAACTCTTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCGcc                                                                                               >  2:232454/1‑151 (MQ=255)
                                                 cGTCCATACTCAACGCCTGAATACTGCCAGTGTGCGCAAACAATTTAGCCAACTCTTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCGCCGa                                                                                             <  2:95943/150‑1 (MQ=255)
                                                  gTCCATACTCAACGCCTGAATACTGCCAGTGTGCGCAAACAATTTAGCCAACTCTTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCGCCGAt                                                                                            >  1:499076/1‑150 (MQ=255)
                                                  gTCCATACTCAACGCCTGAATACTGCCAGTGTGCGCAAACAATTTAGCCAACTCTTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCGCCGATa                                                                                           <  2:672999/151‑1 (MQ=255)
                                                    ccATACTCAACGCCTGAATACTGCCAGTGTGCGCAAACAATTTAGCCAACTCTTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCGCCGATAAg                                                                                         <  2:789463/151‑1 (MQ=255)
                                                        aCTCAACGCCTGAATACTGCCAGTGTGCGCAAACAATTTAGCCAACTCTTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCGCCGATAAGc                                                                                        >  1:625073/1‑148 (MQ=255)
                                                           cAACTCCTGAATGCTGCCAGTGTGCGCAAACAAGTTAGCCAACTCTTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCTCAGTCCAGGGAAAGGAGTGGTAGTAGTACGCCGCGAGATGCTCCACCAGCGCCGATAAGCAGag                                                                                    <  1:688019/149‑2 (MQ=255)
                                                           cAACGCCTGAATACTGCCAGTGTGCGCAAACAATTTAGCCAACTCTTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCGCCGATAAGCAGAAt                                                                                   <  2:395951/150‑1 (MQ=255)
                                                           cAACGCCTGAATACTGCCAGTGTGCGCAAACAATTTAGCCAACTCTTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCGCCGATAAGCAGAATa                                                                                  <  1:1022764/151‑1 (MQ=255)
                                                               gCCTGAATACTGCCAGTGTGCGCAAACAATTTAGCCAACTCTTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCGCCGATAAGCAGAATACGTa                                                                              <  2:630203/151‑1 (MQ=255)
                                                                 cTGAATACTGCCAGTGTGCGCAAACAATTTAGCCAACTCTTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCGCCGATAAGCAGAATACGTaa                                                                             >  2:246831/1‑150 (MQ=255)
                                                                   gAATACTGCCAGTGTGCGCAAACAATTTAGCCAACTCTTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCGCCGATAAGCAGAATACGTAAAcc                                                                          >  2:1295591/1‑151 (MQ=255)
                                                                   gAATACTGCCAGTGTGCGCAAACAATTTAGCCAACTCTTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCGCCGATAAGCAGAATACGTAAAc                                                                           <  1:698770/150‑1 (MQ=255)
                                                                     aTACTGCCAGTGTGCGCAAACAATTTAGCCAACTCTTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCGCCGATAAGCAGAATACGTAAAcc                                                                          >  2:1220082/1‑149 (MQ=255)
                                                                           ccAGTGTGCGCAAACAATTTAGCCAACTCTTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCGCCGATAAGCAGAATACGTAAACCAGGGCGGa                                                                  <  1:746509/151‑1 (MQ=255)
                                                                           ccAGTGTGCGCAAACAATTTAGCCAACTCTTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCGCCGATAAGCAGAATACGTAAACCAGGGCGGa                                                                  <  2:249148/151‑1 (MQ=255)
                                                                             aGTGTGCGCAAACAATTTAGCCAACTCTTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCGCCGATAAGCAGAATACGTAAACCAGGGCGGAt                                                                 >  2:946887/1‑150 (MQ=255)
                                                                             aGTGTGCGCAAACAATTTAGCCAACTCTTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCGCCGATAAGCAGAATACGTAAACCAGGGCGGATa                                                                <  2:169049/151‑1 (MQ=255)
                                                                              gtgtGCGCAAACAATTTAGCCAACTCTTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCGCCGATAAGCAGAATACGTAAACCAGGGCGGATaa                                                               <  2:705002/151‑1 (MQ=255)
                                                                                 tgCGCAAACAATTTAGCCAACTCTTCCGCGCGGGATACCGTCCGATTAGTTATTGTCTCCGCGCAGTCCAGTGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCGCCAGCGCCGATAAGCAGAATACGTAAACCAGGGCGGAt                                                                 <  2:131664/146‑1 (MQ=255)
                                                                                 tgCGCAAACAATTTAGCCAACTCTTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCGCCGATAAGCAGAATACGTAAACCAGGGCGGATaaa                                                              >  2:950523/1‑149 (MQ=255)
                                                                                    gcAAACAATTTAGCCAACTCTTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCGCCGATAAGCAGAATACGTAAACCAGGGCGGATAAAagaca                                                         <  1:1012592/151‑1 (MQ=255)
                                                                                      aaaCAATTTAGCCAACTCTTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCGCCGATAAGCAGAATACGTAAACCAGGGCGGATAAAagac                                                          >  2:1258417/1‑148 (MQ=255)
                                                                                       aaCAATTTAGCCAACTCTTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCGCCGATAAGCAGAATACGTAAACCAGGGCGGATAAAagacagac                                                      >  2:980734/1‑151 (MQ=255)
                                                                                       aaCAATTTAGCCAACTCTTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCGCCGATAAGCAGAATACGTAAACCAGGGCGGATAAAagacagac                                                      >  1:584246/1‑151 (MQ=255)
                                                                                          aaTTTAGCCAACTCTTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCGCCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGtt                                                   <  2:247529/151‑1 (MQ=255)
                                                                                              tAGCCAACTCTTCCTCGGGGGATTCCGTCCGATTAGTTATTGTTTCCGCTCAGTACAGGGAAAGGTGTTGCAATAATACGGCGCGAGATGGTCCTCCAGCCCCGATAAGCAGAATTCTTAAACCAGGGCGGATAAAAGACAGACGTTCCa                                                <  2:4059/150‑1 (MQ=255)
                                                                                                 ccAACTCTTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCGCCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTcc                                                 >  1:767326/1‑146 (MQ=255)
                                                                                                  cAACTCTTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCGCCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTcc                                                 >  1:1276478/1‑145 (MQ=255)
                                                                                                   aaCTCTTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCGCCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGc                                          >  1:536033/1‑151 (MQ=255)
                                                                                                    aCTCTTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCGCCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCt                                         <  2:244064/151‑1 (MQ=255)
                                                                                                       ctTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCGCCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCtt                                        <  2:1291205/149‑1 (MQ=255)
                                                                                                        ttCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCGCCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAAc                                     >  1:209883/1‑151 (MQ=255)
                                                                                                         tCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCGCCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTaa                                      <  2:247514/149‑1 (MQ=255)
                                                                                                          ccGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCGCCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACaa                                   <  1:254368/151‑1 (MQ=255)
                                                                                                          ccGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCGCCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACa                                    <  2:1112521/150‑1 (MQ=255)
                                                                                                          ccGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCGCCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACa                                    >  1:357612/1‑150 (MQ=255)
                                                                                                          ccGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCGCCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACa                                    >  1:402802/1‑150 (MQ=255)
                                                                                                            gcgcgGGATACCGTCCGATTAGTTATTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCGCCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAGc                                 <  2:959602/151‑1 (MQ=255)
                                                                                                                   aTACCGTCCGATTAGTTATTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCGCCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAGCCTACAcc                          >  2:857366/1‑151 (MQ=255)
                                                                                                                     aCCGTCCGATTAGTTATTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCGCCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAGCCTACACCa                         >  2:57304/1‑150 (MQ=255)
                                                                                                                      ccGTCCGATTAGTTATTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCGCCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAGCCTACACCATc                       >  1:481766/1‑151 (MQ=255)
                                                                                                                          ccGATTAGTTATTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCGCCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAGCCTACACCATCGGt                    >  2:1269913/1‑150 (MQ=255)
                                                                                                                                aGTTATTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCGCCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAGCCTACACCATCGGTATTGTCa             <  2:585410/151‑1 (MQ=255)
                                                                                                                                   tATTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCGCCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAGCCTACACCATCGGTATTGTCAccc          >  2:475640/1‑151 (MQ=255)
                                                                                                                                    aTTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCGCCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAGCCTACACCATCGGTATTGTCAccc          <  1:849513/150‑1 (MQ=255)
                                                                                                                                    aTTGTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCGCCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAGCCTACACCATCGGTATTGTCACCca         <  1:839642/151‑1 (MQ=255)
                                                                                                                                       gTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCGCCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAGCCTACACCATCGGTGTTGTCACCcagca      <  2:528035/151‑1 (MQ=255)
                                                                                                                                       gTCACCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCGCCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAGCCTACACCATCGGTATTGTCACCcagc       <  2:62080/150‑1 (MQ=255)
                                                                                                                                          aCCGCGCAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCGCCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAGCCTACACCATCGGTATTGTCACCCAGCAGGc   <  2:37465/151‑1 (MQ=255)
                                                                                                                                            cgcgCAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCGCCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAGCCTACACCATCGGTATTGTCACCCAGCAGGCg  >  2:1247395/1‑150 (MQ=255)
                                                                                                                                               |                                                                                                                                                  
CCACTGGATGTTGCATTAATAATGAGATCAAACTCATGACCTTCCAGTTCGTCCATACTCAACGCCTGAATACTGCCAGTGTGCGCAAACAATTTAGCCAACTCTTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCGCCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAGCCTACACCATCGGTATTGTCACCCAGCAGGCG  >  NC_000913/3430267‑3430556

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A