Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F50 I2 R1 121 82.0 2593086 97.7% 2533445 150.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,930,868 A→G F76L (TTC→CTC)  ravA ← hexameric AAA+ MoxR family ATPase, putative molecular chaperone

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,930,8680AG100.0% 229.3 / NA 64F76L (TTC→CTC) ravAhexameric AAA+ MoxR family ATPase, putative molecular chaperone
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (35/29);  total (35/29)

GAATTGCCGGGCCCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAAGCGGGTCATCAGATATTCAAACGCGCGGGCATTCTGAAAGGCGAATTTTAAGCGCCGGGCGATCAAACTTTTGGCAATACCTGGC‑GGGCCAAGGAGGAACACA‑CTTTCACCACTTAATGCCGCTAATAAACACAAGCGGATGGCGTG  >  NC_000913/3930724‑3931015
                                                                                                                                                |                                                                                                                                                     
gAATTGCCGGGCCCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAGGCGGGt                                                                                                                                                 <  1:197443/151‑1 (MQ=255)
 aaTTGCCGGGCCCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAGGCgg                                                                                                                                                   >  1:853812/1‑148 (MQ=255)
    tGCCGGGCCCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAGGCGGGtta                                                                                                                                               >  2:290254/1‑147 (MQ=255)
      ccGGGCCCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAGGCGGGgcatca                                                                                                                                            >  1:439625/1‑150 (MQ=255)
        gggCCCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAGGCGGGTCATCAGat                                                                                                                                         <  1:704828/151‑1 (MQ=255)
         ggCCCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAGGCGGGTCATCAGata                                                                                                                                        <  2:849472/151‑1 (MQ=255)
           cccGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAGGCGGGTCATCAGATAtt                                                                                                                                      <  2:492920/151‑1 (MQ=255)
            ccGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGTGGCGGATTAACAGATAtt                                                                                                                                      >  1:930523/1‑150 (MQ=255)
              gCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAGGCGGGTGATCAGAAAtt                                                                                                                                      >  1:34467/1‑148 (MQ=255)
               cTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAGGCGGGTCATCAGATAtt                                                                                                                                      >  2:909882/1‑147 (MQ=255)
                 ttCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAGGCGGGGCCATAGAAATTCaaa                                                                                                                                  >  1:248203/1‑149 (MQ=255)
                   ccAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAGGCGGGTCATCAGATATTCAAAcgcg                                                                                                                              <  2:878212/151‑1 (MQ=255)
                    cAGATCTCAGCCAGAAAGACAATGGCTGCTTCCGGCAGGTAAGCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAGGCGGGTCATCAGATATTCAAAcgc                                                                                                                               <  1:694169/149‑1 (MQ=255)
                         ctcATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAGGCGGGGCATCAGAAAATCAAACGCGCggg                                                                                                                          >  1:933308/1‑149 (MQ=255)
                           cATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCTCCCTTCATCTTTTAGCGCCTGAATAGAAAGGGGACGAAAAGCTTCTGCCGGCGTGGAGAGGCGGTTCATCAGATATTCAAACGCGCGGGCag                                                                                                                       <  1:991065/150‑2 (MQ=255)
                               cAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAGGCGGGTCATCAGATATTCAAACGCGCGGGCATTCTGa                                                                                                                  <  2:699403/151‑1 (MQ=255)
                               cAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAGGCGGGTCATCAGAAATTTAAAAGCGCGGGCAATCt                                                                                                                    >  1:1106131/1‑149 (MQ=255)
                                aGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAGGCGGGGCCTCAGATATTCAAAAACGCGGGGACTCTg                                                                                                                   >  1:788824/1‑149 (MQ=255)
                                    aGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAGGCGGGTCATCAGATATTCAAACGCGCGGGCATTCTGAAAGGc                                                                                                             <  1:969904/151‑1 (MQ=255)
                                      aCAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAGGCGGGTCATCAGATATTCAAACGCGCGGGCATTCTGAAAGGCGa                                                                                                           <  1:1210538/151‑1 (MQ=255)
                                      aCAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAGGCGGGTCATCAGATATTCAAACGCGCGGGCATTCTGAAAGGCGa                                                                                                           <  2:779076/151‑1 (MQ=255)
                                        aaTTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAGGCGGGTCATCAGATATTCAAACGCGCGGGCATTCTGAAAGGCGAAt                                                                                                         <  1:64777/151‑1 (MQ=255)
                                        aaTTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAGGCGGGTCATCAGATATTCAAACGCGCGGGCATTCTGAAAGGCGAAt                                                                                                         <  2:530439/151‑1 (MQ=255)
                                        aaTTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAGGCGGGTCATCAGATAATCAAACACGCCGGCATTCTGAAAGGGGa                                                                                                           >  1:266553/1‑149 (MQ=255)
                                           ttCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAGGCGGGTCATCAGATATTCAAACGCGCGGGCATTCTGAAAGGCGAAttt                                                                                                       <  1:891605/150‑1 (MQ=255)
                                            tCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAGGCGGGTCATCAGATATTCAAACGCGCGGGCATTCTGAAAGGCGAAtttt                                                                                                      >  2:1080873/1‑150 (MQ=255)
                                             cTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAGGCGGGGCCTCCGATATTTCAAAACGCGGGGGTTTTTAAAGGGGGAtttt                                                                                                      >  1:1001318/1‑149 (MQ=255)
                                             cTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCG‑CCTTCATCTTTTAGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAGGCGGGTCATCAGATATTCAAACGCGCGGGCATTCTGAAAGGCGAATTTTa                                                                                                     <  2:109212/149‑1 (MQ=255)
                                               gCTTCCGGCAGGTAACCGCTGGTTAAATGTTCATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAGGCGGGTCATCAGAAATTCAAACACGCGGGCATTCTGAAAGGGGAATTTTTAgc                                                                                                  >  1:1118310/1‑151 (MQ=255)
                                                 ttCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAGGCGGGTCATCAGATATTTAAAAGCGCGGGCATTCTGAAAGGGGGAtttttaaag                                                                                                 >  2:24211/1‑145 (MQ=255)
                                                   ccGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAGGCGGGGTCTCAGATATTTAAAAGCGCGGGCATTCTGAAAAGCGAATTTTaatggcc                                                                                               >  2:402871/1‑145 (MQ=255)
                                                      gCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAGGCGGGTCATCAGATATTCAAACGCGCGGGCATTCTGAAAGGCGAATTTTAAGCGCCGGGc                                                                                           <  2:155308/151‑1 (MQ=255)
                                                       cAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAGGCGGGTCATCAGATATTCAAACGCGCGGGCATTTTGAAAGGGGAATTTTAAGCGCCGGGCg                                                                                          >  1:165777/1‑151 (MQ=255)
                                                          gTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAGGCGGGTCATCAGATATTCAAACGCGCGGGGATTTTGAAAGGCGAATTTTAAGCGCCCGGCGATc                                                                                       >  2:434742/1‑151 (MQ=255)
                                                           tAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAGGCGGGTTAATAAATATTTTAACGCGCCGGGCTTTTCTGAGGCGAATTTTTAGCGCCGGGCg                                                                                          >  1:641180/1‑147 (MQ=255)
                                                           tAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAGGCGGGTCATCAGATATTCAAACGCGCGGGCATTCTGGAAGGCGAATTTTAAGCGCCGGGCGATc                                                                                       >  1:875608/1‑150 (MQ=255)
                                                            aaCCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAGGCGGGGCATCCGATATTCAAACGCGCGGGCATTCTTTAAGGCGAATTTTAAGCGCCGGGCg                                                                                          >  2:899742/1‑146 (MQ=255)
                                                             aCCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAGGCGGGGCATCAGATATTCAAACGCGCGGGCATTCTGAAAGGCGAATTTTAAGCGCCGGGCGATCaa                                                                                     >  2:257035/1‑150 (MQ=255)
                                                                  tGGTTAAACGTTCATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAGGCGGGTCATCAGATATTTAAACGCGCGGGCATTCTGAAAGGCGAATTTTAAGCGCCGGGCGATCAAACtttt                                                                               >  2:1157798/1‑151 (MQ=255)
                                                                       aaaCGTTCATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAGGCGGGTCATCAGATATTCAAACGCGCGGGCATTCTGAAAGGCGAATTTTAAGCGCCGGGCGATCAAACTTTTGGCa                                                                           <  2:1003762/150‑1 (MQ=255)
                                                                           gTTCATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAGGCGGGTCATCAGATATTCAAACGCGCGGGCATTCTGAAAGGCGAATTTTAAGCGCCGGGCGATCAAACTTTTGGCAATAcc                                                                      <  2:918369/151‑1 (MQ=255)
                                                                              cATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAGGCGGGTCCTCAGATATTTAAACGCGCGGGCATTCTGCAAAGCGACTTTTAAGCGACGGGAGATCAAAATTTTGGCCATACCTg                                                                    >  1:176832/1‑150 (MQ=255)
                                                                               aTAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAGGCGGGTCATCAGATATTCAAACGCGCGGGCATTCTTAAAAGCGAATTTTAAGCGCCGGGCGATCAAACTTTTTGCAATaaccgg                                                                   >  2:95400/1‑145 (MQ=255)
                                                                                 aGCGCCCTTCATCTTTTAGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAGGCGGGTCATCAGATATTCAAAAGCGCGGGGCTTCTGAAAGGCGAATTTTTAGCGCCGGGCGATCAAACTTTTGGGAATACCTGgg‑gg                                                               >  1:464841/1‑151 (MQ=255)
                                                                                  gcgcCCTTCATCTTTTAGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAGGCGGGTCATCAGAAATTCAAAAGCGCGGGGATTCTGGAAGGGGAATTTTAAGCGCCGGGCGATCAAACTTTTTGCAATACCTGGC‑ggg                                                              >  2:1183957/1‑151 (MQ=255)
                                                                                   cgcCCTTCATCTTTTAGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAGGCGGGTCCTCAGATATTCAAACGCGCGGGCATTCTGAAAGGCGAATTTTAAGCGCCGGGCGATTAAACTTTTGGCAATACCCGGC‑ggg                                                              >  2:661542/1‑150 (MQ=255)
                                                                                      ccTTCATCTTTTAGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAGGCGGGGCATCAGATATTCAAACGCGCGGGCATTCTGAAAAGCGAAATTTAAACGCCGGGCGGACAAAATTTTTGCAATAACCGGC‑ggggc                                                            >  1:707686/1‑147 (MQ=255)
                                                                                          cATCTTTTAGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAGGCGGGTCATCAGATATTCAAACGCGCGGGCATTCTGAAAGGCGAATTTTAAGCGCCGGGCGATCAAACTTTTGGCAATACCTGGC‑GGGCCAaggag                                                      <  1:1111548/151‑1 (MQ=255)
                                                                                                 tAGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAGGCGGGTCATCAGATATTCAAACGCGCGGGCATTCTGAAAGGCGAATTTTAAGCGCCGGGCGATCAAACTTTTGGCAATACCTGGC‑GGGCCAAGGAGGAaca                                                 <  1:569856/149‑1 (MQ=255)
                                                                                                  aGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAGGCGGGTCATCAGATATTCAAACGCGCGGGCATTCTGAAAGGCGAATTTTAAGCGCCGGGCGATCAAACTTTTGGCAATACCTGGC‑GGGCCAAGGAGGAacaca‑c                                             <  2:1282306/151‑1 (MQ=255)
                                                                                                     gcCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAGGCGGGTCATCAGATATTCAAACGCGCGGGCATTCTGAAAGGCGAATTTTAAGCGCCGGGCGATCAAACTTTTGGCAATACCTGGC‑GGGCCAAGGAGGAACACA‑Cttt                                          <  1:973613/151‑1 (MQ=255)
                                                                                                         gAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAGGCGGGTCATCAGATATTCAAACGCGCGGGCATTCTGAAAGGCGAATTTTAAGCGCCGGGCGATCAAACTTTTGGCAATACCTGGC‑GGGCCAAGGAGGAACACA‑CTTTca                                        <  1:552670/149‑1 (MQ=255)
                                                                                                                 aGGGGACCAAAAACTTCTTCCGGCGTGGAGAGGCGGGTCCTCAGGTATTTAAACCCGCGGGGATTCTGGAAAGGGTAATTTAAACGCCGGGCGGTCAAAAATTTGTGTATACCTGGC‑GGGCCAAGGAGGAACACA‑CTTTcccccc                                    >  2:1067527/1‑143 (MQ=255)
                                                                                                                       ccAAAAACTTCTTCCGGCGTGGAGAGGCGGGTCATCAGATATTCAAACGCGCGGGCATTCTGAAAGGCGAATTTTAAGCGCCGGGCGATCAAACTTTTGGCAATACCTGGC‑GGGCCAAGGAGGAACACA‑CTTTCACCACTTAATGCCGCta                        <  1:1157765/151‑1 (MQ=255)
                                                                                                                         aaaaaCTTCTTCCGGCGTGGAGAGGCGGGTCATCAGATATTCAAACGCGCGGGGCTTTTGAAAGGCGAATTTTAAGCGCCGGGCGATCAAAATTTTTGCAATACCTGGC‑GGGGCAAGGAGGAACACA‑CTTTCACCACCTAATGCCGCtaa                       >  2:607955/1‑150 (MQ=255)
                                                                                                                         aaaaaCTTCTTCCGGCGTGGAGAGGCGGGTCATCAGATATTCAAACGCGCGGGCATTCTGAAAGGCGAATTTTAAGCGCCGGGCGATCAAACTTTTGGCAATACCTGGC‑GGGCCAAGGAGGAACACA‑CTTTCACCACTTAATGCCGCtaat                      <  1:1175975/151‑1 (MQ=255)
                                                                                                                          aaaaCTTCTTCCGGCGTGGAGAGGCGGGTCATCAGAAATTCCAACGCGCGGGCCTTTTTAAAGGGGAATTTTAAACGCCGGGCGATCAAACATTTGGCCAAAACTGGC‑GGGGCAAGGGGGAAAACA‑CTTTCACCACTTAATTccccca                        >  1:1243963/1‑144 (MQ=255)
                                                                                                                                  ttcCGGCGTGGAGAGGCGGGGGATCAGATATTCAAACGCGCGGGCATTCTTAAAGGGGAATTTTAAACGCCCGGGGATTAAAACTTTGGCAATACCTGGCGGGGCCAAGGAGGAA‑ACACCTTTCACC‑CTTAAAGGCCCCAATAAACACaa              >  1:73725/1‑150 (MQ=255)
                                                                                                                                   tcCGGCGTGGAGAGGCGGGTCATCAGATATTCAAACGCGCGGGCATTCTGAAAGGCGAATTTTTAGCGCCGGGCGATCAAACTTTTGGGCATACCTGGC‑GGGGCAAGGAGGAACACA‑CTTTCACCACTTAAAGCCGCTAATAAAAACaa              >  2:1285225/1‑149 (MQ=255)
                                                                                                                                   tcCGGCGTGGAGAGGCGGGTCATCAGATATTCAAACGCGCGGGCATTCTGAAAGGCGAATTTTAAGCGCCGGGCGATCAAACTTTTGGCAATACCTGGC‑GGGCCAAGGAGGAACACA‑CTTTCACCACTTAATGCCGCTAATAAACACaa              <  2:596786/149‑1 (MQ=255)
                                                                                                                                   tcCGGCGTGGAGAGGCGGGTCATCAGATATTCAAACGCGCGGGCATTCTGAAAGGCGAATTTTAAGCGCCGGGCGATCAAACTTTTGGCAATACCTGGC‑GGGCCAAGGAGGAACACA‑CTTTCACCACTTAATGCCGCTAATAAACACaa              <  2:1145668/149‑1 (MQ=255)
                                                                                                                                      ggCGTGGAGAGGCGGGTCATCAGATATTCAAACGCGCGGGCATTCTGAAAGGCGAATTTTAAGCGCCGGGCGATCAAACTTTTGGCAATACCTGGC‑GGGCCAAGGAGGAACACA‑CTTTCACCACTTAATGCCGCTAATAAACACAAGCGGa         <  1:81377/151‑1 (MQ=255)
                                                                                                                                        cGTGGAGAGGCGGGTCATCAGATATTCAAACGCGCGGGCATTCTGAAAGGCGAATTTTAAGCGCCGGGCGATCAAACTTTTGGCAATACCTGGC‑GGGCCAAGGAGGAACACA‑CTTTCACCACTTAATGCCGCTAATAAACACAAGCGGATg       <  1:909841/151‑1 (MQ=255)
                                                                                                                                           ggAGAGGCGGGTCATCAGATATTCAAACGCGCGGGCATTCTGAAAGGCGAATTTTAAGCGCCGGGCGATCAAACTTTTGGCAATACCTGGC‑GGGCCAAGGAGGAACACA‑CTTTCACCACTTAATGTCGCTAATAAAAACAAGCGGATGGCg    >  1:1009453/1‑151 (MQ=255)
                                                                                                                                             agagGCGGGTCATCAGATATTCAAACGCGCGGGCATTCTGAAAGGCGAATTTTAAGCGCCGGGCGATCAAACTTTTGGCAATACCTGGC‑GGGCCAAGGAGGAACACA‑CTTTCACCACTTAATGCCGCTAATAAACACAAGCGGATGGCGTg  <  2:156599/151‑1 (MQ=255)
                                                                                                                                                |                                                                                                                                                     
GAATTGCCGGGCCCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTAGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAAGCGGGTCATCAGATATTCAAACGCGCGGGCATTCTGAAAGGCGAATTTTAAGCGCCGGGCGATCAAACTTTTGGCAATACCTGGC‑GGGCCAAGGAGGAACACA‑CTTTCACCACTTAATGCCGCTAATAAACACAAGCGGATGGCGTG  >  NC_000913/3930724‑3931015

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A