Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F50 I2 R1 121 82.0 2593086 97.7% 2533445 150.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,001,381 T→C intergenic (‑325/‑45) yigE ← / → corA DUF2233 family protein/magnesium/nickel/cobalt transporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,001,3810TC100.0% 303.8 / NA 82intergenic (‑325/‑45)yigE/corADUF2233 family protein/magnesium/nickel/cobalt transporter
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (32/50);  total (32/50)

ACTGGCTCACTATCCTGTCATCCAGGATCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGCTGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCACCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGTCGAAGAGTCACAACCCCTTGTAAATGCAGTATGGATTGATCTTGTCGAACCG  >  NC_000913/4001237‑4001527
                                                                                                                                                |                                                                                                                                                  
aCTGGCTCACTATCCTGTCATCCAGGATCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGCTGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCAc                                                                                                                                              <  2:522202/151‑1 (MQ=255)
  tGGCTCACTATCCTGTCATCCAGGATCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGCTGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCACCg                                                                                                                                            >  1:887952/1‑151 (MQ=255)
   ggCTCACTATCCTGTCATCCAGGATCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGCTGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCAcc                                                                                                                                             <  1:730461/149‑1 (MQ=255)
   ggCTCACTATCCTGTCATCCAGGATCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGCTGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCACCg                                                                                                                                            <  2:1209297/150‑1 (MQ=255)
   ggCTCACTATCCTGTCATCCAGGATCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGCTGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCACCGa                                                                                                                                           <  1:1226535/151‑1 (MQ=255)
    gCTCACTATCCTGTCATCCAGGATCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGCTGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCACCGaa                                                                                                                                          <  2:1121408/151‑1 (MQ=255)
    gCTCACTATCCTGTCATCCAGGATAAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGCTGAGTCAGGATGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCACCGa                                                                                                                                           >  1:1247288/1‑150 (MQ=255)
       cACTATCCTGTCATCCAGGATCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGCTGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCACCGAACt                                                                                                                                        <  1:694165/150‑1 (MQ=255)
       cACTATCCTGTCATCCAGGATCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGCTGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTCTCTGTGCGCCCACCGAACTg                                                                                                                                       <  1:1196585/151‑1 (MQ=255)
           aTCCTGTCATCCAGGATCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGCTGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCACCGAACTGTCCg                                                                                                                                   <  1:1107907/151‑1 (MQ=255)
             ccTGTCATCCAGGATCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGCTGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCACCGAACTGTCCGat                                                                                                                                 <  1:418429/151‑1 (MQ=255)
             ccTGTCATCCAGGATCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGCTGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCACCGAACTGTCCGat                                                                                                                                 >  1:96461/1‑151 (MQ=255)
                  cATCCAGGATCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGCTGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCACCGAACTGTCCGATAtttt                                                                                                                            >  1:510059/1‑151 (MQ=255)
                  cATCCAGGATCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGCTGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCACCGAACTGTCCGATAtttt                                                                                                                            <  2:984074/151‑1 (MQ=255)
                   aTCCAGGATCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGCTGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTa                                                                                                                           <  2:265040/151‑1 (MQ=255)
                     ccAGGATCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGCTGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTaa                                                                                                                          <  1:567035/150‑1 (MQ=255)
                     ccAGGATCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGCTGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTAAg                                                                                                                         <  2:788402/151‑1 (MQ=255)
                     ccAGGATCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGCTGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTAAg                                                                                                                         <  1:924715/151‑1 (MQ=255)
                       aGGATCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGCTGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTAAGc                                                                                                                        >  1:683743/1‑150 (MQ=255)
                       aGGATCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGCTGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTAAGCa                                                                                                                       <  2:223277/151‑1 (MQ=255)
                          aTCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGCTGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTAAGCATTg                                                                                                                    >  2:155783/1‑151 (MQ=255)
                          aTCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCAGTCGCGCTGAGTCAGGCTGTTTAATGGTCTAAAACCCAATTTGTTTCTGTGCGCCCGCCGAACTGTCCGATATCTTAAGCAtt                                                                                                                     <  1:572682/150‑1 (MQ=255)
                           tCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGCTGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTAAGCATTgg                                                                                                                   >  2:115152/1‑151 (MQ=255)
                            cAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGCTGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTAAGCATTggg                                                                                                                  >  2:559986/1‑151 (MQ=255)
                             aaCTCCTAAGGCTTTCCCTTTTCGCTGATAGCCATAGCGGTTGTCTGCGACCTCAATTTTTCCCGTCTCGCTGAGTCAGTCTTTTTAATGGTCTGAAACACAATTTGTTTCTGTGCGGCCACCGAACGGTCCGATATTTTGCGCATTgaga                                                                                                                 <  1:755911/151‑1 (MQ=255)
                             aaCTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGCTGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTAAGCATTggg                                                                                                                  >  1:992997/1‑150 (MQ=255)
                               cTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGCTGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTAAGCATTGGGAGt                                                                                                               >  1:24423/1‑151 (MQ=255)
                                 ccTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGCTGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTAAGCATTGGGAGTc                                                                                                              <  2:1282986/150‑1 (MQ=255)
                                   tAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGCTGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCg                                                                                                           >  2:431777/1‑151 (MQ=255)
                                    aaGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGCTGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCg                                                                                                           <  2:641000/150‑1 (MQ=255)
                                    aaGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGCTGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCg                                                                                                           <  2:241276/150‑1 (MQ=255)
                                     aGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGCTGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTAAGCATTGGGCGTCCCgg                                                                                                          >  1:160582/1‑150 (MQ=255)
                                     aGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGCTGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCgg                                                                                                          >  1:740394/1‑150 (MQ=255)
                                          aTCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGCTGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCAt                                                                                                      <  2:756852/149‑1 (MQ=255)
                                          aTCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGCTGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGc                                                                                                    >  2:451458/1‑151 (MQ=255)
                                           tCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGCTGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCt                                                                                                   >  2:247031/1‑151 (MQ=255)
                                             ccTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGCTGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGa                                                                                                 <  2:1272873/151‑1 (MQ=255)
                                             ccTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGCTGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGa                                                                                                 <  2:550543/151‑1 (MQ=255)
                                             ccTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGCTGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCACGCTGa                                                                                                 <  2:136973/151‑1 (MQ=255)
                                               tttatGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGCTGAGTCCGGCTGTTTAATGGTCTGAAACCCCATTTGTTTCTGGGCGCCCACCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAg                                                                                                >  1:645956/1‑150 (MQ=255)
                                                ttttGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGCTGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAgc                                                                                               <  2:46880/150‑1 (MQ=255)
                                                   tGCTGATAGCCTTAGCGGTTGTCAGTGACCTCAATTTTTCCCGTCACGCTGAGTCATGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCCCCTAACTGTTCGATATTTTACGCATTGGGAGTCCCGGTCATGCTGAGCGCa                                                                                            <  1:7208/150‑1 (MQ=255)
                                                           gCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGCTGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTg                                                                                   <  2:641491/151‑1 (MQ=255)
                                                                aGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGCTGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGaaa                                                                               >  1:1247986/1‑150 (MQ=255)
                                                                   ggTTGTCAGCGACCTCAATTTTTCCCGTCGCGCTGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATaa                                                                           <  2:166539/151‑1 (MQ=255)
                                                                    gTTGTCAGCGACCTCAATTTTTCCCGTCGCGCTGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAAc                                                                          <  2:735861/151‑1 (MQ=255)
                                                                      tGTCAGCGACCTCAATTTTTCCCGTCGCGCTGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAAcc                                                                         <  2:569370/150‑1 (MQ=255)
                                                                          aGCGACCTCAATTTTTCCCGTCGCGCTGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTg                                                                    >  1:590516/1‑151 (MQ=255)
                                                                                  cAATTTTTCCCGTCGCGCTGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTCCAACTGCCAACTCACCGCCTTACCCGGCt                                                            <  1:621722/151‑1 (MQ=255)
                                                                                   aaTTTTTCCCGTCGCGCTGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTg                                                           <  2:246397/151‑1 (MQ=255)
                                                                                      ttttCCCGTCGCGCTGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGa                                                         >  2:511889/1‑150 (MQ=255)
                                                                                      ttttCCCGTCGCGCTGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGa                                                         <  1:989536/150‑1 (MQ=255)
                                                                                        ttCCCGTCGCGCTGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAg                                                       <  2:1041132/150‑1 (MQ=255)
                                                                                               cgcgCTGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGTCGAaga                                                <  2:241879/150‑1 (MQ=255)
                                                                                               cgcgCTGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGTCGAag                                                 >  1:961829/1‑149 (MQ=255)
                                                                                                gcgcTGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGTCGAAGAGt                                              <  2:1248023/151‑1 (MQ=255)
                                                                                                  gcTGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGTCGAAGAGTc                                             >  2:1248266/1‑150 (MQ=255)
                                                                                                   cTGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGTCGAAGAGTcac                                           >  1:154813/1‑151 (MQ=255)
                                                                                                     gAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGTCGAAGAGTcaca                                          >  1:91007/1‑150 (MQ=255)
                                                                                                     gAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGTCGAAGAGTCACaa                                         <  1:108645/151‑1 (MQ=255)
                                                                                                       gTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGTCGAAGAGTCACAAcc                                       <  1:191581/151‑1 (MQ=255)
                                                                                                           ggCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGTCGAAGAGTCACAACCCCtt                                   <  1:1268590/151‑1 (MQ=255)
                                                                                                           ggCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGTCGAAGAGTCACAACCCCt                                    <  2:17224/150‑1 (MQ=255)
                                                                                                            gCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGTCGAAGAGTCACAACCCCTTg                                  <  2:505234/151‑1 (MQ=255)
                                                                                                               gTTTAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGTCGAAGAGTCACAACCCCTTGTa                                <  1:1074491/150‑1 (MQ=255)
                                                                                                                  tAATGGTCTGAAACCCAATTTGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGTCGAAGAGTCACAACCCCTTGTAAATg                            >  2:1277532/1‑151 (MQ=255)
                                                                                                                       gTCTGAAACCCAATTTGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGTCGAAGAGTCACAACCCCTTGTAAATGCAGt                        >  1:259112/1‑150 (MQ=255)
                                                                                                                         cTGAAACCCAATTTGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGTCGAAGAGTCACAACCCCTTGTAAATGCAGTATg                     >  1:856395/1‑151 (MQ=255)
                                                                                                                           gAAACCCAATTTGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGTCGAAGAGTCACAACCCCTTGTAAATGCAGTATgg                    >  1:1283860/1‑150 (MQ=255)
                                                                                                                           gAAACCCAATTTGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGTCGAAGAGTCACAACCCCTTGTAAATGCAGTATgg                    >  1:510428/1‑150 (MQ=255)
                                                                                                                           gAAACCCAATTTGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGTCGAAGAGTCACAACCCCTTGTAAATGCAGTATg                     <  2:1294846/149‑1 (MQ=255)
                                                                                                                              aCCCAATTTGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGTCGAAGAGTCACAACCCCTTGTAAATGCAGTATGGATTg                <  1:15342/151‑1 (MQ=255)
                                                                                                                                ccAATTTGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGTCGAAGAGTCACAACCCCTTGTAAATGCAGTATGGATTGAt              <  1:1284735/151‑1 (MQ=255)
                                                                                                                                 cAATTTGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGTCGAAGAGTCACAACCCCTTGTAAATGCAGTATGGATTGATc             <  1:611993/151‑1 (MQ=255)
                                                                                                                                 cAATTTGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGTCGAAGAGTCACAACCCCTTGTAAATGCAGTATGGATTGATc             >  2:416330/1‑151 (MQ=255)
                                                                                                                                  aaTTTGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGTCGAAGAGTCACAACCCCTTGTAAATGCAGTATGGATTGATCt            >  2:906086/1‑151 (MQ=255)
                                                                                                                                   aTTTGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGTCGAAGAGTCACAACCCCTTGTAAATGCAGTATGGATTGATCtt           <  1:411489/151‑1 (MQ=255)
                                                                                                                                    tttGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGTCGAAGAGTCACAACCCCTTGTAAATGCAGTATGGATTGATCTTg          >  2:279926/1‑151 (MQ=255)
                                                                                                                                      tGTTTCTGTGCGCCCACCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGTCGAAGAGTCACAACCCCTTGTAAATGCAGTATGGATTGATCTTGt         <  1:600403/150‑1 (MQ=255)
                                                                                                                                       gTTTCTGTGCGCCCACCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGTCGAAGAGTCACAACCCCTTGTAAATGCAGTATGGATTGATCTTGTc        <  1:799045/150‑1 (MQ=255)
                                                                                                                                           cTGTGCGCCCACCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGTCGAAGAGTCACAACCCCTTGTAAATGCTGTATGAATTGATCTTGTCGaa     <  1:158575/149‑1 (MQ=255)
                                                                                                                                           cTGTGCGCCCACCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGTCGAAGAGTCACAACCCCTTGTAAATGCAGTATGGATTGATCTTGTCGAAcc   >  2:215220/1‑151 (MQ=255)
                                                                                                                                            tgtgcgCCCACCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGTCGAAGAGTCACAACCCCTTGTAAATGCAGTATGGATTGATCTTGTCGAACCg  >  2:1060926/1‑151 (MQ=255)
                                                                                                                                                |                                                                                                                                                  
ACTGGCTCACTATCCTGTCATCCAGGATCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGCTGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCACCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCATGCTGAGCGCATTTCAACTGGAAAATAACCGACTGACCCGGCTGGAAGTCGAAGAGTCACAACCCCTTGTAAATGCAGTATGGATTGATCTTGTCGAACCG  >  NC_000913/4001237‑4001527

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A