Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F50 I2 R1 139 64.5 2139856 92.7% 1983646 149.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,140,385 G→A R118H (CGT→CAT)  flgL → flagellar hook‑filament junction protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,140,3850GA100.0% 254.6 / NA 65R118H (CGT→CAT) flgLflagellar hook‑filament junction protein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (35/30);  total (35/30)

CCACTCAAAAAGTGTCACTGGAAGAGAGTGTACTTAGCCAGGTCACCACTGCTATCCAGAATGCTCAGGAAAAAATTGTCTACGCCAGCAATGGCACCTTGAGTGACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCGTGACCAGTTGCTGAATCTGGCAAACACCACTGACGGTAACGGGCGCTACATTTTTGCCGGTTATAAAACAGAGACTGCGCCGTTTAGCGAAGAGAAAGGGAAATACGTCGGTGGAGCAGAAAGTATTAAACAACAGGTCGATGCT  >  NC_000913/1140238‑1140530
                                                                                                                                                   |                                                                                                                                                 
ccACTCAAAAAGTGTCACTGGAAGAGAGTGTACTTAGCCAGGTCACCACTGCTATCCAGAATGCTCAGGAAAAAATTGTCTACGCCAGCAATGGCACCTTGAGTGACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCATGa                                                                                                                                                <  1:792743/151‑1 (MQ=255)
    tCAAAAAGTGTCACTGGAAGAGAGTGTACTTAGCCAGGTCACCACTGCTATCCAGAATGCTCAGGAAAAAATTGTCTACGCCAGCAATGGCACCTTGAGTGACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCATGAcc                                                                                                                                              >  1:924663/1‑149 (MQ=255)
     cAAAAAGTGTCACTGGAAGAGAGTGTACTTAGCCAGGTCACCACTGCTATCCAGAATGCTCAGGAAAAAATTGTCTACGCCAGCAATGGCACCTTGAGTGACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCATGACCAGt                                                                                                                                           >  2:238982/1‑151 (MQ=255)
     cAAAAAGTGTCACTGGAAGAGAGTGTACTTAGCCAGGTCACCACTGCTATCCAGAATGCTCAGGAAAAAATTGTCTACGCCAGCAATGGCACCTTGAGTGACGATGACCGAGCATCGCTGGCTACGGATATTCAGGGGCTTCATGACCAGt                                                                                                                                           >  2:478439/1‑151 (MQ=255)
        aaaGTGTCACTGGAAGAGAGTGTACTTAGCCAGGTCACCACTGCTATCCAGAATGCTCAGGAAAAAATTGTCTACGCCAGCAATGGCACCTTGAGTGACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCATGACCAGTTGc                                                                                                                                        <  2:729735/151‑1 (MQ=255)
                aCTGGAAGAGAGTGTACTTAGCCAGGTCACCACTGCTATCCAGAATGCTCAGGAAAAAATTGTCTACGCCAGCAATGGCACCTTGAGTGACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCATGACCAGTTGCTGAATCTg                                                                                                                                >  1:891610/1‑151 (MQ=255)
                             gtACTTAGCCAGGTCACCACTGCTATCCAGAATGCTCAGGAAAAAATTGTCTACGCCAGCAATGGCACCTTGAGTGACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCATGACCAGTTGCTGAATCTGGCAAACACCACt                                                                                                                    <  1:10032/150‑1 (MQ=255)
                             gtACTTAGCCAGGTCACCACTGCTATCCAGAATGCTCAGGAAAAAATTGTCTACGCCAGCAATGGCACCTTGAGTGACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCATGACCAGTTGCTGAATCTGGCAAACACCACt                                                                                                                    <  2:920454/150‑1 (MQ=255)
                                cTTAGCCAGGTCACCACTGCTATCCAGAATGCTCAGGAAAAAATTGTCTACGCCAGCAATGGCACCTTGAGTGACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCATGACCAGTTGCTGAATCTGGCAAACACCACTGACg                                                                                                                >  2:468954/1‑151 (MQ=255)
                                            accacTGCTATCCAGAATGCTCAGGAAAAAATTGTCTACGCCAGCAATGGCACCTTGAGTGACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCATGACCAGTTGCTGAATCTGGCAAACACCACTGACGGTAACGGGCGCt                                                                                                    <  1:537087/151‑1 (MQ=255)
                                            accacTGCTATCCAGAATGCTCAGGAAAAAATTGTCTACGCCAGCAATGGCACCTTGAGTGACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCATGACCAGTTGCTGAATCTGGCAAACACCACTGACGGTAACGGGCGCt                                                                                                    >  2:545010/1‑151 (MQ=255)
                                              cacTGCTATCCAGAATGCTCAGGAAAAAATTGTCTACGCCAGCAATGGCACCTTGAGTGACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCATGACCAGTTGCTGAATCTGGCAAACACCACTGACGGTAACGGGCGCTAc                                                                                                  <  1:818961/151‑1 (MQ=255)
                                              cacTGCTATCCAGAATGCTCAGGAAAAAATTGTCTACGCCAGCAATGGCACCTTGAGTGACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCATGACCAGTTGCTGAATCTGGCAAACACCACTGACGGTAACGGGCGCTAc                                                                                                  >  2:391945/1‑151 (MQ=255)
                                                cTGCTATCCAGAATGCTCAGGAAAAAATTGTCTACGCCAGCAATGGCACCTTGAGTGACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCATGACCAGTTGCTGAATCTGGCAAACACCACTGACGGTAACGGGCGCTACAt                                                                                                >  1:463606/1‑151 (MQ=255)
                                                  gCTATCCAGAATGCTCAGGAAAAAATTGTCTACGCCAGCAATGGCACCTTGAGTGACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCATGACCAGTTGCTGAATCTGGCAAACACCACTGACGGTAACGGGCGCTACAttt                                                                                              >  1:358176/1‑151 (MQ=255)
                                                      tCCAGAATGCTCAGGAAAAAATTGTCTACGCCAGCAATGGCACCTTGAGTGACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCATGACCAGTTGCTGAATCTGGCAAACACCACTGACGGTAACGGGCGCTACATTTTTGc                                                                                          >  1:881214/1‑151 (MQ=255)
                                                        cAGAATGCTCAGGAAAAAATTGTCTACGCCAGCAATGGCACCTTGAGTGACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCATGACCAGTTGCTGAATCTGGCAAACACCACTGACGGTAACGGGCGCTACATTTTTGCCg                                                                                        <  1:7500/151‑1 (MQ=255)
                                                          taaTGCTCAGTAAAAAATTGTCTACGCCAGCAATGGCACCTTGAGTGACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCATGACCAGTTGCTGAATCTGGCAAACACCACTGACGGTAACGGGCGCTACATTTTTGCCGGt                                                                                      >  2:929982/2‑151 (MQ=255)
                                                            aTGCTCAGGAAAAAATTGTCTACGCCAGCAATGGCACCTTGAGTGACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCATGACCAGTTGCTGAATCTGGCAAACACCACTGACGGTAACGGGCGCTACATTTTTGCCGGTta                                                                                    <  1:862662/151‑1 (MQ=255)
                                                              gCTCAGGAAAAAATTGTCTACGCCAGCAATGGCACCTTGAGTGACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCATGACCAGTTGCTGAATCTGGCAAACACCACTGACGGTAACGGGCGCTACATTTTTGCCGGTtata                                                                                  <  2:206471/151‑1 (MQ=255)
                                                                tCAGGAAAAAATTGTCTACGCCAGCAATGGCACCTTGAGTGACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCATGACCAGTTGCTGAATCTGGCAAACACCACTGACGGTAACGGGCGCTACATTTTTGCCGGTTATaa                                                                                 >  1:110503/1‑150 (MQ=255)
                                                                tCAGGAAAAAATTGTCTACGCCAGCAATGGCACCTTGAGTGACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCATGACCAGTTGCTGAATCTGGCAAACACCACTGACGGTAACGGGCGCTACATTTTTGCCGGTTATaa                                                                                 >  2:832659/1‑150 (MQ=255)
                                                                 cAGGAAAAAATTGTCTACGCCAGCAATGGCACCTTGAGTGACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCATGACCAGTTGCTGAATCTGGCAAACACCACTGACGGTAACGGGCGCTACATTTTTGCCGGTTATaaaa                                                                               <  2:140027/151‑1 (MQ=255)
                                                                 cAGGAAAAAATTGTCTACGCCAGCAATGGCACCTTGAGTGACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCATGACCAGTTGCTGAATCTGGCAAACACCACTGACGGTAACGGGCGCTACATTTTTGCCGGTTATaa                                                                                 <  1:631044/149‑1 (MQ=255)
                                                                    gAAAAAATTGTCTACGCCAGCAATGGCACCTTGAGTGACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCATGACCAGTTGCTGAATCTGGCAAACACCACTGACGGTAACGGGCGCTACATTTTTGCCGGTTATAAAACag                                                                            <  2:349409/151‑1 (MQ=255)
                                                                     aaaaaaTTGTCTACGCCAGCAATGGCACCTTGAGTGACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCATGACCAGTTGCTGAATCTGGCAAACACCACTGACGGTAACGGGCGCTACATTTTTGCCGGTTATAAAAc                                                                              >  1:375344/1‑148 (MQ=255)
                                                                     aaaaaaTTGTCTACGCCAGCAATGGCACCTTGAGTGACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCATGACCAGTTGCTGAATCTGGCAAACACCACTGACGGTAACGGGCGCTACATTTTTGCCGGTTATAAAACaga                                                                           <  2:51195/151‑1 (MQ=255)
                                                                       aaaaTTGTCTACGCCAGCAATGGCACCTTGAGTGACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCATGACCAGTTGCTGAATCTGGCAAACACCACTGACGGTAACGGGCGCTACATTTTTGCCGGTTATAAAACAgaga                                                                         <  1:941256/151‑1 (MQ=255)
                                                                         aaTTGTCTACGCCAGCAATGGCACCTTGAGTGACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCATGACCAGTTGCTGAATCTGGCAAACACCACTGACGGTAACGGGCGCTACATTTTTGCCGGTTATAAAACAGAGACt                                                                       >  1:734605/1‑151 (MQ=255)
                                                                           ttGTCTACGCCAGCAATGGCACCTTGAGTGACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCATGACCAGTTGCTGAATCTGGCAAACACCACTGACGGTAACGGGCGCTACATTTTTGCCGGTTATAAAACAGAGACTgc                                                                     >  2:405826/1‑151 (MQ=255)
                                                                            tGTCTACGCCAGCAATGGCACCTTGAGTGACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCATGACCAGTTGCTGAATCTGGCAAACACCACTGACGGTAACGGGCGCTACATTTTTGCCGGTTATAAAACAGAGACTgcg                                                                    >  1:267209/1‑151 (MQ=255)
                                                                             gTCTACGCCAGCAATGGCACATTGAGTGACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCATGACCAGTTGCTGAATCTGGCAAACACCACTGACGGTAACGGGCGCTACATTTTTGCCGGTTATAAAACAGAGACTgcg                                                                    >  2:940081/1‑150 (MQ=255)
                                                                                tACGCCAGCAATGGCACCTTGAGTGACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCATGACCAGTTGCTGAATCTGGCAAACACCACTGACGGTAACGGGCGCTACATTTTTGCCGGTTATAAAACAGAGACTGCGCCGt                                                                >  1:203065/1‑151 (MQ=255)
                                                                                tACGCCAGCAATGGCACCTTGAGTGACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCATGACCAGTTGCTGAATCTGGCAAACACCACTGACGGTAACGGGCGCTACATTTTTGCCGGTTATAAAACAGAGACTGCGCCGt                                                                >  1:45742/1‑151 (MQ=255)
                                                                                  cGCCAGCAATGGCACCTTGAGTGACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCATGACCAGTTGCTGAATCTGGCAAACACCACTGACGGTAACGGGCGCTACATTTTTGCCGGTTATAAAACAGAGACTGCGcc                                                                  <  1:937132/147‑1 (MQ=255)
                                                                                   gCCAGCAATGGCACCTTGAGTGACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCATGACCAGTTGCTGAATCTGGCAAACACCACTGACGGTAACGGGCGCTACATTTTTGCCGGTTATAAAACAGAGACTGCGCCGTTTa                                                             <  1:119021/151‑1 (MQ=255)
                                                                                   gCCAGCAATGGCACCTTGAGTGACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCATGACCAGTTGCTGAATCTGGCAAACACCACTGACGGTAACGGGCGCTACATTTTTGCCGGTTATAAAACAGAGACTGCGCCGTTTa                                                             <  1:434635/151‑1 (MQ=255)
                                                                                      aGCAATGGCACCTTGAGTGACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCATGACCAGTTGCTGAATCTGGCAAACACCACTGACGGTAACGGGCGCTACATTTTTGCCGGTTATAAAACAGAGACTGCGCCGTTTAGCg                                                          <  1:71001/151‑1 (MQ=255)
                                                                                                 cTTGAGTGACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCATGACCAGTTGCTGAATCTGGCAAACACCACTGACGGTAACGGGCGCTACATTTTTGCCGGTTATAAAACAGAGACTGCGCCGTTTAGCGAAGAGAAAggg                                               >  2:507933/1‑151 (MQ=255)
                                                                                                 cTTGAGTGACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCATGACCAGTTGCTGAATCTGGCAAACACCACTGACGGTAACGGGCGCTACATTTTTGCCGGTTATAAAACAGAGACTGCGCCGTTTAGCGAAGAGAAAggg                                               >  1:17676/1‑151 (MQ=255)
                                                                                                   tGAGTGACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCATGACCAGTTGCTGAATCTGGCAAACACCACTGACGGTAACGGGCGCTACATTTTTGCCGGTTATAAAACAGAGACTGCGCCGTTTAGCGAAGAGAAAGGGa                                              <  2:666319/150‑1 (MQ=255)
                                                                                                    gAGTGACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCATGACCAGTTGCTGAATCTGGCAAACACCACTGACGGTAACGGGCGCTACATTTTTGCCGGTTATAAAACAGAGACTGCGCCGTTTAGCGAAGAGAAAGGGaa                                             >  2:88368/1‑150 (MQ=255)
                                                                                                     aGTGACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCATGACCAGTTGCTGAATCTGGCAAACACCACTGACGGTAACGGGCGCTACATTTTTGCCGGTTATAAAACAGAGACTGCGCCGTTTAGCGAAGAGAAAGGGAAAt                                           <  1:947014/151‑1 (MQ=255)
                                                                                                       tGACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCATGACCAGTTGCTGAATCTGGCAAACACCACTGACGGTAACGGGCGCTACATTTTTGCCGGTTATAAAACAGAGACTGCGCCGTTTAGCGAAGAGAAAGGGAAATAc                                         >  1:372584/1‑151 (MQ=255)
                                                                                                        gACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCATGACCAGTTGCTGAATCTGGCAAACACCACTGACGGTAACGGGCGCTACATTTTTGCCGGTTATAAAACAGAGACTGCGCCGTTTAGCGAAGAGAAAGGGAAATACg                                        >  2:934667/1‑151 (MQ=255)
                                                                                                          cGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCATGACCAGTTGCTGAATCTGGCAAACACCACTGACGGTAACGGGCGCTACATTTTTGCCGGTTATAAAACAGAGACTGCGCCGTTTAGCGAAGAGAAAGGGAAATACGTc                                      >  2:703037/1‑151 (MQ=255)
                                                                                                          cGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCATGACCAGTTGCTGAATCTGGCAAACACCACTGACGGTAACGGGCGCTACATTTTTGCCGGTTATAAAACAGAGACTGCGCCGTTTAGCGAAGAGAAAGGGAAATACGTc                                      <  2:974145/151‑1 (MQ=255)
                                                                                                           gATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCATGACCAGTTGCTGAATCTGGCAAACACCACTGACGGTAACGGGCGCTACATTTTTGCCGGTTATAAAACAGAGACTGCGCCGTTTAGCGAAGAGAAAGGGAAATACGTCg                                     >  2:29293/1‑151 (MQ=255)
                                                                                                                 cGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCATGACCAGTTGCTGAATCTGGCAAACACCACTGACGGTAACGGGCGCTACATTTTTGCCGGTTATAAAACAGAGACTGCGCCGTTTAGCGAAGAGAAAGGGAAATACGTCGGTgg                                 >  2:369539/1‑149 (MQ=255)
                                                                                                                 cGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCATGACCAGTTGCTGAATCTGGCAAACACCACTGACGGTAACGGGCGCTACATTTTTGCCGGTTATAAAACAGAGACTGCGCCGTTTAGCGAAGAGAAAGGGAAATACGTCGGTGGAg                               <  2:250035/151‑1 (MQ=255)
                                                                                                                 cGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCATGACCAGTTGCTGAATCTGGCAAACACCACTGACGGTAACGGGCGCTACATTTTTGCCGGTTATAAAACAGAGACTGCGCCGTTTAGCGAAGAGAAAGGGAAATACGTCGGTGGAg                               <  1:641912/151‑1 (MQ=255)
                                                                                                                    gCCTCGCTGGCTACGGATATTCAGGGGCTTCATGACCAGTTGCTGAATCTGGCAAACACCACTGACGGTAACGGGCGCTACATTTTTGCCGGTTATAAAACAGAGACTGCGCCGTTTAGCGAAGAGAAAGGGAAATACGTCGGTGGAGc                              >  1:1019641/1‑149 (MQ=255)
                                                                                                                     ccTCGCTGGCTACGGATATTCAGGGGCTTCATGACCAGTTGCTGAATCTGGCAAACACCACTGACGGTAACGGGCGCTACATTTTTGCCGGTTATAAAACAGAGACTGCGCCGTTTAGCGAAGAGAAAGGGAAATACGTCGGTGGAGCAGa                           <  1:22366/151‑1 (MQ=255)
                                                                                                                       tagCTGGCTACGGATATTCCGGGGCTTCATGACGAGTTGCTGAATCTGGCAAACACCACTGACGGTAACTGGCGCTACATTTTTGCCGGTTATAAAACAGAGACTGCGCCGTTTAGCGTAGAGAAAGGGAAATACGTCGGTGGAGCAGaa                          >  2:327563/3‑150 (MQ=255)
                                                                                                                       tCGCTGGCTACGGATATTCAGGGGCTTCATGACCAGTTGCTGAATCTGGCAAACACCACTGACGGTAACGGGCGCTACATTTTTGCCGGTTATAAAACAGAGACTGCGCCGTTTAGCGAAGAGAAAGGGAAATACGTCGGTGGAGCAGaa                          >  1:939962/1‑150 (MQ=255)
                                                                                                                         gCTGGCTACGGATATTCAGGGGCTTCATGACCAGTTGCTGAATCTGGCAAACACCACTGACGGTAACGGGCGCTACATTTTTGCCGGTTATAAAACAGAGACTGCGCCGTTTAGCGAAGAGAAAGGGAAATACGTCGGTGGAGCAGAAAGt                       >  1:853756/1‑151 (MQ=255)
                                                                                                                            ggCTACGGATATTCAGGGGCTTCATGACCAGTTGCTGAATCTGGCAAACACCACTGACGGTAACGGGCGCTACATTTTTGCCGGTTATAAAACAGAGACTGCGCCGTTTAGCGAAGAGAAAGGGAAATACGTCGGTGGAGCAGAAAGTa                      <  1:382682/149‑1 (MQ=255)
                                                                                                                            ggCTACGGATATTCAGGGGCTTCATGACCAGTTGCTGAATCTGGCAAACACCACTGACGGTAACGGGCGCTACATTTTTGCCGGTTATAAAACAGAGACTGCGCCGTTTAGCGAAGAGAAAGGGAAATACGTCGGTGGAGCAGAAAGTAtt                    <  2:465784/151‑1 (MQ=255)
                                                                                                                               tACGGATATTCAGGGGCTTCATGACCAGTTGCTGAATCTGGCAAACACCACTGACGGTAACGGGCGCTACATTTTTGCCGGTTATAAAACAGAGACTGCGCCGTTTAGCGAAGAGAAAGGGAAATACGTCGGTGGAGCAGAAAGTATTaa                  >  1:42937/1‑150 (MQ=255)
                                                                                                                                aCGGATATTCAGGGGCTTCATGACCAGTTGCTGAATCTGGCAAACACCACTGACGGTAACGGGCGCTACATTTTTGCCGGTTATAAAACAGAGACTGCGCCGTTTAGCGAAGAGAAAGGGAAATACGTCGGTGGAGCAGAAAGTATTaa                  <  1:908255/149‑1 (MQ=255)
                                                                                                                                aCGGATATTCAGGGGCTTCATGACCAGTTGCTGAATCTGGCAAACACCACTGACGGTAACGGGCGCTACATTTTTGCCGGTTATAAAACAGAGACTGCGCCGTTTAGCGAAGAGAAAGGGAAATACGTCGGTGGAGCAGAAAGTATTaa                  <  1:36527/149‑1 (MQ=255)
                                                                                                                                aCGGATATTCAGGGGCTTCATGACCAGTTGCTGAATCTGGCAAACACCACTGACGGTAACGGGCGCTACATTTTTGCCGGTTATAAAACAGAGACTGCGCCGTTTAGCGAAGAGAAAGGGAAATACGTCGGTGGAGCAGAAAGTATTAaac                >  1:126589/1‑151 (MQ=255)
                                                                                                                                 cGGATATTCAGGGGCTTCATGACCAGTTGCTGAATCTGGCAAACACCACTGACGGTAACGGGCGCTACATTTTTGCCGGTTATAAAACAGAGACTGCGCCGTTTAGCGAAGAGAAAGGGAAATACGTCGGTGGAGCAGAAAGTATTaa                  <  2:856197/148‑1 (MQ=255)
                                                                                                                                 cGGATATTCAGGGGCTTCATGACCAGTTGCTGAATCTGGCAAACACCACTGACGGTAACGGGCGCTACATTTTTGCCGGTTATAAAACAGAGACTGCGCCGTTTAGCGAAGAGAAAGGGAAATACGTCGGTGGAGCAGAAAGTATTAaac                >  1:328464/1‑150 (MQ=255)
                                                                                                                                              gCTTCATGACCAGTTGCTGAATCTGGCAAACACCACTGACGGTAACGGGCGCTACATTTTTGCCGGTTATAAAACAGAGACTGCGCCGTTTAGCGAAGAGAAAGGGAAATACGTCGGTGGAGCAGAAAGTATTAAACAACAGGTCGATGCt  <  1:242520/151‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                 
CCACTCAAAAAGTGTCACTGGAAGAGAGTGTACTTAGCCAGGTCACCACTGCTATCCAGAATGCTCAGGAAAAAATTGTCTACGCCAGCAATGGCACCTTGAGTGACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCGTGACCAGTTGCTGAATCTGGCAAACACCACTGACGGTAACGGGCGCTACATTTTTGCCGGTTATAAAACAGAGACTGCGCCGTTTAGCGAAGAGAAAGGGAAATACGTCGGTGGAGCAGAAAGTATTAAACAACAGGTCGATGCT  >  NC_000913/1140238‑1140530

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A