Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 4926 296.4 4517418 96.8% 4372860 264.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 509,672 3 bp→TGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP042583509,6720AT99.2% 926.6 / NA 391intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base A (1/0);  major base T (200/187);  minor base G (1/2);  total (202/189)
Fisher's exact test for biased strand distribution p-value = 6.13e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP042583509,6730CG99.5% 923.1 / NA 391intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/0);  major base G (200/188);  minor base T (1/1);  total (202/189)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP042583509,6740TA100.0% 941.1 / NA 391intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base A (202/189);  total (202/189)

Only 100 of 391 total aligned reads displayed.

AAGGTTCGCAAATTCGCATATGACGCAGAGGAACGCCTGCCTGATACATTAGGTTATACAGTGGGTTGCAGAGACTTTGATGATTTGCATACCAGGTCCAGATATCAGCCACTTTCCAGTCGTAAATGGGGTAAATGTACCAGCTATGACCGCCTGGTGCGGCCGTAGTCCAGGGTTTATCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGACTAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGTTGGTATTGACTAAGGGAATTTTGCGTCGTAAGCGGGAGCGCAACCCAGTAAAACTCTTCGATGACATCGGTGTACAACTCGCGCAGGGACTGAACATAGTTAATGGTGCAAGAGAATTGCGCCTCCCAGTCG  >  CP042583/509392‑509948
                                                                                                                                                                                                                                                                                        |||                                                                                                                                                                                                                                                                                  
           aTTCGCATATGACGCAGAGGAACGCCTGCCTGATACATTAGGTTATACAGTGGGTTGCAGAGACTTTGATGATTTGCATACCAGGTCCAGATATCAGCCACTTTCCAGTCGTAAATGGGGTAAATGTACCAGCTATGACCGCCTGGTGCGGCCGTAGTCCAGGGTTTATCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACt                                                                                                                                                                                                                                                                   <  2:449727/289‑1 (MQ=255)
           aTTCGCATATGACGCAGAGGAACGCCTGCCTGATACATTAGGTTATACAGTGGGTTGCAGAGACTTTGATGATTTGCATACCAGGTCCAGATATCAGCCACTTTCCAGTCGTAAATGGGGTAAATGTACCAGCTATGACCGCCTGGTGCGGCCGTAGTCCAGGGTTTATCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACt                                                                                                                                                                                                                                                                   <  2:42962/289‑1 (MQ=255)
                                 cGCCTGCCTGATACATTAGGTTATACAGTGGGTTGCAGAGACTTTGATGATTTGCATACCAGGTCCAGATATCAGCCACTTTCCAGTCGTAAATGGGGTAAATGTACCAGCTATGACCGCCTGGTGCGGCCGTAGTCCAGGGTTTATCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGt                                                                                                                                                                                                                                             <  2:1601638/289‑1 (MQ=255)
                                      gcctgATACATTAGGTTATACAGTGGGTTGCAGAGACTTTGATGATTTGCATACCAGGTCCAGATATCAGCCACTTTCCAGTCGTAAATGGGGTAAATGTACCAGCTATGACCGCCTGGTGCGGCCGTAGTCCAGGGTTTATCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACt                                                                                                                                                                                                                                                                   >  1:2241911/1‑262 (MQ=255)
                                      gcctgATACATTAGGTTATACAGTGGGTTGCAGAGACTTTGATGATTTGCATACCAGGTCCAGATATCAGCCACTTTCCAGTCGTAAATGGGGTAAATGTACCAGCTATGACCGCCTGGTGCGGCCGTAGTCCAGGGTTTATCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCCAGTACATATTGTTCGAAGGTCATg                                                                                                                                                                                                                                         >  2:529396/1‑288 (MQ=255)
                                      gcctgATACATTAGGTTATACAGTGGGTTGCAGAGACTTTGATGATTTGCATACCAGGTCCAGATATCAGCCACTTTCCAGTCGTAAATGGGGTAAATGTACCAGCTATGACCGCCTGGTGCGGCCGTAGTCCAGGGTTTATCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAACTTGTTCGAAGGTCATg                                                                                                                                                                                                                                         >  2:570399/1‑288 (MQ=255)
                                            tACATTAGGTTATACAGTGGGTTGCAGAGACTTTGATGATTTGCATACCAGGTCCAGATATCAGCCACTTTCCAGTCGTAAATGGGGTAAATGTACCAGCTATGACCGCCTGGTGCGGCCGTAGTCCAGGGTTTATCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGACAAACTCACGTACAAATTGTTCGAAGGTCATGCctg                                                                                                                                                                                                                                     >  1:1523794/1‑286 (MQ=255)
                                                 tAGGTTATACAGTGGGTTGCAGAGACTTTGATGATTTGCATACCAGGTCCAGATATCAGCCACTTTCCAGTCGTAAATGGGGTAAATGTACCAGCTATGACCGCCTGGTGCGGCCGTAGTCCAGGGTTTATCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCctgg                                                                                                                                                                                                                                    <  1:720099/282‑1 (MQ=255)
                                                 tAGGTTATACAGTGGGTTGCAGAGACTTTGATGATTTGCATACCAGGTCCAGATATCAGCCACTTTCCAGTCGTAAATGGGGTAAATGTACCAGCTATGACCGCCTGGTGCGGCCGTAGTCCAGGGTTTATCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTGCGAAGGTCATGCCTGGCTGGTaa                                                                                                                                                                                                                             >  1:1727736/1‑289 (MQ=255)
                                                             tGGGTTGCAGAGACTTTGATGATTTGCATACCAGGTCCAGATATCAGCCACTTTCCAGTCGTAAATGGGGTAAATGTACCAGCTATGACCGCCTGGTGCGGCCGTAGTCCAGGGTTTATCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCaaa                                                                                                                                                                                                                                                                     >  1:1063709/1‑237 (MQ=255)
                                                             tGGGTTGCAGAGACTTTGATGATTTGCATACCAGGTCCAGATATCAGCCACTTTCCAGTCGTAAATGGGGTAAATGTACCAGCTATGACCGCCTGGTGCGGCCGTAGTCCAGGGTTTATCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCa                                                                                                                                                                                                                                                                 >  2:1046063/1‑241 (MQ=255)
                                                             tGGGTTGCAGAGACTTTGATGATTTGCATACCAGGTCCAGATATCAGCCACTTTCCAGTCGTAAATGGGGTAAATGTACCAGCTATGACCGCCTGGTGCGGCCGTAGTCCAGGGTTTATCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGa                                                                                                                                                                                                                                                 >  2:508359/1‑257 (MQ=255)
                                                             tGGGTTGCAGAGACTTTGATGATTTGCATACCAGGTCCAGATATCAGCCACTTTCCAGTCGTAAATGGGGTAAATGTACCAGCTATGACCGCCTGGTGCGGCCGTAGTCCAGGGTTTATCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGTAGGTCATGCCTGGCTGGTAAACGCAGAAAAAg                                                                                                                                                                                                                 >  1:1234867/1‑289 (MQ=255)
                                                              gggTTGCAGAGACTTTGATGATTTGCATACCAGGTCCAGATATCAGCCACTTTCCAGTCGTAAATGGGGTAAATGTACCAGCTATGACCGCCTGGTGCGGCCGTAGTCCAGGGTTTATCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACt                                                                                                                                                                                                                                                                   >  2:1280808/1‑238 (MQ=255)
                                                                   gCAGAGACTTTGATGATTTGCATACCAGGTCCAGATATCAGCCACTTTCCAGTCGTAAATGGGGTAAATGTACCAGCTATGACCGCCTGGTGCGGCCGTAGTCCAGGGTTTATCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAggg                                                                                                                                                                                                           <  2:139865/289‑1 (MQ=255)
                                                                            ttGATGATTTGCATCCCAGGTCCAGATTTCAGCCACTTTCCCGTCGTAAATGGGGTAACTGTACCAGCTATTACCGCCTGGTGCGTCCGTAGTCCAGGGTTTATCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATc                                                                                                                                                                                                  <  2:1736674/289‑1 (MQ=255)
                                                                                tgatTTGCATACCAGGTCCAGATATCAGCCACTTTCCAGTCGTAAATGGGGTAAATGTACCAGCTATGACCGCCTGGTGCGGCCGTAGTCCAGGGTTTATCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCa                                                                                                                                                                                               <  2:108523/288‑1 (MQ=255)
                                                                                    ttGCATACCAGGTCCAGATATCAGCCACTTTCCAGTCGTAAATGGGGTAAATGTACCAGCTATGACCGCCTGGTGCGGCCGTAGTCCAGGGTTTATCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTg                                                                                                                                                                                          <  1:2071271/289‑1 (MQ=255)
                                                                                     tGCATACCAGGTCCAGATATCAGCCACTTTCCAGTCGTAAATGGGGTAAATGTACCAGCTATGACCGCCTGGTGCGGCCGTAGTCCAGGGTTTATCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTgg                                                                                                                                                                                         <  2:1800889/289‑1 (MQ=255)
                                                                                      gCATACCAGGTCCATGTATCAGCCACTTTCCAGTCGTAAATGGGGGAAATGTACCAGCTATGACCGCCTGGTGCGGCCGTAGTCCAGGGTTTATCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTggg                                                                                                                                                                                        <  2:2143696/289‑1 (MQ=255)
                                                                                       cATACCAGGTCCAGATATCAGCCACTTTCCAGTCGTAAATGGGGTAAATGTACCAGCTATGACCGCCTGGTGCGGCCGTAGTCCAGGGTTTATCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTgggg                                                                                                                                                                                       >  1:1796255/1‑289 (MQ=255)
                                                                                          aCCAGTTCCAGAACTCCGCCCCTTGCCAGGCGTAAATGGGGTAAATGTACCAGCTATGACCGCCTGGTGCGGCCGTAGTCCAGGGTTTATCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAgg                                                                                                                                                                                    <  2:1467131/289‑1 (MQ=255)
                                                                                            cAGGTCCAGATATCAGCCACTTTCCAGTCGTAAATGGGGTAAATGTACCAGCTATGACCGCCTGGTGCGGCCGTAGTCCAGGGTTTATCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGtt                                                                                                                                                                                  >  1:631713/1‑289 (MQ=255)
                                                                                              ggTCCAGATATCAGCCACTTTCCAGTCGTAAATGGGGTAAATGTACCAGCTATGACCGCCTGGTGCGGCCGTAGTCCAGGGTTTATCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTggg                                                                                                                                                                                        >  1:376883/1‑281 (MQ=255)
                                                                                                    gATATCAGCCACTTTCCAGTCGTAAATGGGGTAAATGTACCAGCTATGACCGCCTGGTGCGGCCGTAGTCCAGGGTTTATCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGGGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTAACGCAACTTGGGGAGGTTGACGTAc                                                                                                                                                                           >  1:1153966/1‑288 (MQ=255)
                                                                                                        tCAGCCACTTTCCAGTCGTAAATGGGGTAAATGTACCAGCTATGACCGCCTGGTGCGGCCGTAGTCCAGGGTTTATCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCAt                                                                                                                                                                       >  2:896469/1‑288 (MQ=255)
                                                                                                         cggCCACTTTCCAGTCGTAAATGGGGTAAATGTACCAGCTATGACCGCCTGGTGCGGCCGTAGTCCAGGGTTTATCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTggg                                                                                                                                                                                        >  1:2007196/3‑270 (MQ=255)
                                                                                                          aGCCACTTTCCAGTCGTAAATGGGGTAAATGTACCAGCTATGACCGCCTGGTGCGGCCGTAGTCCAGGGTTTATCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCg                                                                                                                                                                    >  1:445513/1‑289 (MQ=255)
                                                                                                              aaggtCCAGTGGTGAATGGGGTAAATGAGCCAAGTACGACCGCCTGGTGCGGACGTAGTCCAGTGTTTATCGTAGGCAAAACGTTGTTTATTTAAACTGGCGAAGTCGACAAAACGGTTGTAGGACTCATACGTACGGATGCCGATCATCATCGCCGCCAGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCATGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACAt                                                                                                                                                                <  2:2092499/285‑1 (MQ=255)
                                                                                                                         gTAAATGGGGTAAATGTACCAGCTATGACCGCCTGGTGCGGCCGTAGTCCAGGGTTTATCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAg                                                                                                                                                     <  1:494863/289‑1 (MQ=255)
                                                                                                                                   tAAATGTACCAGCTATGACCGCCTGGTGCGGCCGTAGTCCAGGGTTTATCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCa                                                                                                                                                                                               >  1:1419454/1‑237 (MQ=255)
                                                                                                                                   aaaaTGTCCCAGCAATGACGGCCTGGTGCGGCCGTAGTCCAGGGTTTATCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCACCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGGGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCAt                                                                                                                                            <  2:1657378/287‑1 (MQ=255)
                                                                                                                                    aaaTGTACCAGCTATGACCGCCTGGTGCGGCCGTAGTCCAGGGTTTATCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCa                                                                                                                                                                                               <  1:1457779/236‑1 (MQ=255)
                                                                                                                                    aaaTGTACCAGCTATGACCGCCTGGTGCGGCCGTAGTCCAGGGTTTATCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCAtt                                                                                                                                           <  2:1242114/288‑1 (MQ=255)
                                                                                                                                    aaaTGTACCAGCTATGACCGCCTGGTGCGGCCGTAGTCCAGGGTTTATCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCAtt                                                                                                                                           <  2:81927/288‑1 (MQ=255)
                                                                                                                                     aaTGTACCAGCTATGACCGCCTGGTGCGGCCGTAGTCCAGGGTTTATCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCg                                                                                                                                         >  1:1306798/1‑289 (MQ=255)
                                                                                                                                       tGTACCAGCTATGACCGCCTGGTGCGGCCGTAGTCCAGGGTTTATCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACCTCAGGTTCCAAGTACTGCCTTACggg                                                                                                                                       >  2:780244/1‑289 (MQ=255)
                                                                                                                                        gTACCAGCTATGACCGCCTGGTGCGGCCGTAGTCCAGGGTTTATCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGt                                                                                                                                      <  1:239031/289‑1 (MQ=255)
                                                                                                                                        gTACCAGCTATGACCGCCTGGTGCGGCCGTAGTCCAGGGTTTATCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGt                                                                                                                                      <  1:1196946/289‑1 (MQ=255)
                                                                                                                                        gTACCAGCTATGACCGCCTGGTGCGGCCGTAGTCCAGGGTTTATCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGt                                                                                                                                      <  2:1306798/289‑1 (MQ=255)
                                                                                                                                        gTACCAGCTATGACCGCCTGGTGCGGCCGTAGTCCAGGGTTTATCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGAACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGACAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGt                                                                                                                                      <  2:1523794/289‑1 (MQ=255)
                                                                                                                                           ccAGCTATGACCGCCTGGTGCGGCCGTAGTCCAGGGTTTATCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACAATTCGGCAAACTCACGTACAAATCTTTCGAAGGTCATGCCTGGCGGGTAAAAGCAGCAAAAGTCAGGGTCGGTTAGCGCATCTTGGGGAGGTGGACGTACCCATTCGAGAGCAGGTTCCGAGCACTGCCATTCGGGATgg                                                                                                                                   >  2:378664/1‑289 (MQ=255)
                                                                                                                                             aGCTATGACCGCCTGGTGCGGCCGTAGTCCAGGGTTTATCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGt                                                                                                                                      >  2:648816/1‑284 (MQ=255)
                                                                                                                                                   gACCGCCTGGTGCGGCCGTAGTCCAGGGTTTATCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGTTGGTATTgtga                                                                                                                           >  1:1759996/1‑286 (MQ=255)
                                                                                                                                                    aCCGCCTGGTGCGGCCGTAGTCCAGGGTTTATCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTGGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGTTGGGAtggtgga                                                                                                                          >  2:758096/1‑283 (MQ=255)
                                                                                                                                                        ccTGGTGCGGCCGTAGTCCAGGGTTTATCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCa                                                                                                                                                                                                              <  1:766821/201‑1 (MQ=255)
                                                                                                                                                        ccTGGTGCGGCCGTAGTCCAGGGTTTATCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCg                                                                                                                                                                                                 >  1:318699/1‑214 (MQ=255)
                                                                                                                                                        ccTGGTGCGGCCGTAGTCCAGGGTTTATCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGTTGGTATTgtgaaaggg                                                                                                                      >  2:707119/1‑281 (MQ=255)
                                                                                                                                                        ccTGGTGCGGCCGTAGTCCAGGGTTTATCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCAGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGTTGGTATTgtgaaaggg                                                                                                                      >  1:1775849/1‑281 (MQ=255)
                                                                                                                                                            gTGCGGCCGTAGTCCAGGGTTTATCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGt                                                                                                                                      <  1:1837961/269‑1 (MQ=255)
                                                                                                                                                                   cGTAGTACAGGGTTTCTCGTTGGCAAAACGTTATTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCCTCCGCACGTATGCCGATCATCATCGCCGCCTGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGTTGGTATTGTGAAAGGGAATTTTGcgtc                                                                                                           <  2:2231706/289‑1 (MQ=255)
                                                                                                                                                                      aGTCCAGGGTTTATCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGTTGGTATTGTGAAAGGGAATTTTGCGTCGTa                                                                                                        >  1:282314/1‑289 (MQ=255)
                                                                                                                                                                       gTCCAGGGTTTATCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTc                                                                                                                                                         >  2:38604/1‑239 (MQ=255)
                                                                                                                                                                       gTCCAGGGTTTATCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTc                                                                                                                                                         <  1:38604/239‑1 (MQ=255)
                                                                                                                                                                                ttATCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAACAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGCCGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGGTGGTATTGTTAAAGGGCATTTTGAGTCGTAAGCGGGTgcg                                                                                              >  2:1193407/1‑289 (MQ=255)
                                                                                                                                                                                 tATCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGTTGGTATTGTGAAAGGGAATTTTGCGTCGTAAGCGGGAgcgc                                                                                             >  1:1810014/1‑289 (MQ=255)
                                                                                                                                                                                  aTCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCAtt                                                                                                                                           <  1:815360/242‑1 (MQ=255)
                                                                                                                                                                                  aTCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGt                                                                                                                                      <  1:2100888/247‑1 (MQ=255)
                                                                                                                                                                                  aTCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGTTGGTATTGTGAAAGGGAATTTTGCGTCGTAAGCGGGAGCGCa                                                                                            >  1:1357086/1‑289 (MQ=255)
                                                                                                                                                                                       cgGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCCCTGCCATTCGGGTTGGTATTGTGAAAGGGAATTTTGCGTCGTAAGCGGGAGCGCAACCCa                                                                                       >  1:1546138/1‑289 (MQ=255)
                                                                                                                                                                                         gCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGTTGGTATTGTGAAAGGGAATTTTGCGTCGTAAGCGGGAGCGCAACCCAGt                                                                                     >  1:1031099/1‑289 (MQ=255)
                                                                                                                                                                                           aaaaCGTTATTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGTTGGTATTGTGAAAGGGAATTTTGCGTCGTAAGCGGGAGCGCAACCCAGTaa                                                                                   <  1:1095287/289‑1 (MQ=255)
                                                                                                                                                                                                        tttaAACTGGCTATGGCGACTAAACCGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGTTGGTATTGTGAAAGGGAATTTTGCGTCGTAAGCGGGAGCGCAACCCAGTAAAACTCTTCGATGa                                                                      <  1:908496/289‑1 (MQ=255)
                                                                                                                                                                                                        tttaAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGTTGGTATTGTGAAAGGGAATTTTGCGTCGTAAGCGGGAGCGCAACCCAGTAAAACTCTTCGATGa                                                                      <  1:560675/289‑1 (MQ=255)
                                                                                                                                                                                                          taAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGTTGGTATTGTGAAAGGGAATTTTGCGTCGTAAGCGGGAGCGCAACCCAGTAAAACTCTTCGATGa                                                                      <  2:1350912/287‑1 (MQ=255)
                                                                                                                                                                                                            aaCTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGTTGGTATTGTGAAAGGGAATTTTGcgtc                                                                                                           >  2:2152208/1‑248 (MQ=255)
                                                                                                                                                                                                            aaCTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGTTGGTATTGTGAAAGGGAATTTTGCGTCGTAAGCGGGAGCGCAACCCAGTAAAActct                                                                             <  1:1903507/278‑1 (MQ=255)
                                                                                                                                                                                                              cTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGTTGGTATTGTGAAAGGGAATTTTGCGTCGTAAGCGGGAGCGCAACCCAGTaaaa                                                                                 >  1:1924363/1‑272 (MQ=255)
                                                                                                                                                                                                              cTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGTTGGTATTGTGAAAGGGAATTTTGCGTCGTAAGCGGGAGCGCAACCCAGTaaaa                                                                                 <  2:1924363/272‑1 (MQ=255)
                                                                                                                                                                                                                ggcgatggcgaCAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGTTGGTATTGTGAAAGGGAATTTTGCGTCGTAAGCGGGAGCGCAACCCAGTAAACCTCTTGGATGACACCGgtg                                                              >  2:1506104/1‑289 (MQ=255)
                                                                                                                                                                                                                 gcgatggcgaCAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGTTGGTATTGTGAAAGGGAATTTTGCGTCGTAAGCGGGAGCGCAACCCAGTAAAACTCTTCGATGACATCGgtgt                                                             >  1:1486096/1‑289 (MQ=255)
                                                                                                                                                                                                                  gcgtggcaccAAAACGGTTGTTGGCCTAATCCGAGCGGAGGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACGCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGTTGGTATTGTGAAAGGGAATTTTGCGTCGTAAGCGGGAGCGCAACCCAGTAAAACTCTTCGATGACATCGgtgt                                                             <  2:1898216/279‑1 (MQ=255)
                                                                                                                                                                                                                        ggaaaaaaCGGTTTGTCGACTCATGCGCACGGAGGACGATCATCATACCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAGATTGTTCGAAGGTCATGCATGGCGGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCGTCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGTTGGTATTGTGAAAGGGAATTTTGCGTCGTAAGCGGGAGCGCAACCCAGTAAAACTCTTCGATGACATCGGTGTACAACt                                                       <  2:1222105/284‑1 (MQ=255)
                                                                                                                                                                                                                           cAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGTTGGTATTGTGAAAGGGAATTTTGCGTCGTAAGCGGGAgcg                                                                                              >  2:1555010/1‑246 (MQ=255)
                                                                                                                                                                                                                              aaCGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAGGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGTTGGTATTGTGAAAGGGAATTTTGCGTCGTAAGCGGGAGCGCAACCCAGTAAAACTCTTCGATGACATCGGTGTACAACTCGCGCAg                                                <  2:282338/289‑1 (MQ=255)
                                                                                                                                                                                                                                 ggTTGTAGGACTCATCCGCAAGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGTTGGTATTGTGAAAGGGAATTTTGCGTCGTAAGCGGGAGCGCAACCCAGTAAAACTCTTCGATGACATCGGTGTACAACTCGCGCAGGGa                                             <  1:2200506/289‑1 (MQ=255)
                                                                                                                                                                                                                                  tagattgcacgcctCCGCACAGGTTCCGATTGTCCTCGCCCCCGGAACTTTTGGTGAAGACCATTCTGAAAACTGGCGTACAGATTGTTCTAAGGTCATGCCTGGCTGGTAAAAGCAGAGAAAGTCAGGGTCTGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGTTGGTATTGTGAAAGGGAATTTTGCGTCGTAAGCGGGAGCGCAACCCAGTAAAACTCTTCGATGACATCGGTGTACAACTCGCGCAGGGa                                             <  2:1435504/275‑1 (MQ=255)
                                                                                                                                                                                                                                  gttggagaccTCATCCCCACGGATGACGACTATCATGGCCGCCGGACGTTTTTGGGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGTTGGTATTGTGAAAGGGAATTTTGCGTCGTAAGCGGGAGCGCAACCCAGTAAAACTCTTCGATGACATCGGTGTACAACTCGCGCAGGGa                                             <  2:172094/279‑1 (MQ=255)
                                                                                                                                                                                                                                  gTTGTAGGACGCATCCGCACGGATGCCGATCATCCTACCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACGCACGTACAAATTGTTCGAAGGTCATGCCTGTGTGGTAAAAGCAGAAAAAGGCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGTTGGTATTGTGAAAGGGAATTTTGCGTCGTAAGCGGGAGCGCAACCCAGTAAAACTCTTCGATGACATCGGTGTACAACTCGCGCAGGGa                                             <  2:1855948/288‑1 (MQ=255)
                                                                                                                                                                                                                                     gTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGTTGGTATTGTGAAAGGGAATTTTGCGTCGTAAGCGGGAGCGCAACCCAGTAAAACTCTTCGATGACATCGGTGTACAACTCGCGCAGGGACGGa                                         >  2:326930/1‑289 (MQ=255)
                                                                                                                                                                                                                                      tAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGTTGGTATTGTGAAAGGGAATTTTGCGTCGTAAGCGGGAGCGCAACCCAGTAAAACTCTTCGATGACATCGGTGTACAACt                                                       <  2:872564/274‑1 (MQ=255)
                                                                                                                                                                                                                                      tAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGTTGGTATTGTGAAAGGGAATTTTGCGTCGTAAGCGGGAGCGCAACCCAGTAAAACTCTTCGATGACATCGGTGTACAACt                                                       >  1:872564/1‑274 (MQ=255)
                                                                                                                                                                                                                                       aGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGTTGGTATTGTGAAAGGGAATTTTGCGTCGTAAGCGGGAGCGCAACCCAGTAAAACTCTTCGATGACATCGGTGTACAACTCGCGCAGGGACTGAAc                                       <  1:1276222/289‑1 (MQ=255)
                                                                                                                                                                                                                                            tCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGTTGGTATTGTGAAAGGGAATTTTGCGTCGTAAGCGGGAGCGCAACCCAGTAAAACTCTTTGATGACATCGGTGTACAACTCGCGCAGGGACTGAACATAGt                                  >  1:998531/1‑289 (MQ=255)
                                                                                                                                                                                                                                             cATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGCGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGTTGGTAGTGTGAAAGGGAATTTTGCGTCGTAAGCGGGAGCGCAACCCAGTAAAACTCTTCGATGACAACGGTGTACAATTCGCGCAGGGCGTGAACATAGtt                                 >  2:948091/1‑289 (MQ=255)
                                                                                                                                                                                                                                             cATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGTTGGTATTGTGAAAGGGAATTTTGcg                                                                                                             <  2:274453/213‑1 (MQ=255)
                                                                                                                                                                                                                                             cATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGTTGGTATTGTGAAAGGGAATTTTGCGTCGTAAGCGGGAGCGCAACCCCGTAAAACTCTTCGATGACATCGGTGTACAACTCGCGCAGGGa                                             >  1:1624098/1‑277 (MQ=255)
                                                                                                                                                                                                                                             cATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGTTGGTATTGTGAAAGGGAATTTTGCGTCGTAAGCGGGAGCGCAACCCAGTAAAACTCTTCGATGACATCGGTGTACAACTCGCGCAGGGACTGAACATAGtt                                 >  1:1512590/1‑289 (MQ=255)
                                                                                                                                                                                                                                              aTCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGTTGGTATTGTGAAAGGGAATTTTGCGTCGTAAGCGGGAGCGCAACCCAGTAAAACTCTTCGATGACATCGGTGTACAACTCGCGCAGGGACTGAACATAGTTa                                >  1:689863/1‑289 (MQ=255)
                                                                                                                                                                                                                                               tCCGCACGGATGCCGCTAATCATCGCCGCCGGCCTGTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGTTGGTATTGTGAAAGGGAATTTTGCGTCGTAAGCGGGAGCGCAACCCAGTAAAACTCTTCGATGACATCGGTGTACAACTCGCGCAGGGACTGAACATAGTTaa                               <  2:2029203/289‑1 (MQ=255)
                                                                                                                                                                                                                                               tCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGTTGGTATTGTGAAAGGGAATTTTGCGTCGTAAGCGGGAGCGCAACCCAGTAAAACTCTTCGATGACATCGGTGTACAACTCGCGCAGGGACTGAACATAGTTaa                               <  1:2038262/289‑1 (MQ=255)
                                                                                                                                                                                                                                                  gCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGTTGGTATTGTGAAAGGGAATTTTGCGTCGTAAGCGGGAGCGCAACCCAGTAAAACTCTTCGATGACATCGGTGTACAACTCGCGCAGGGACTGAACATAGTTAATgg                            <  1:2152167/289‑1 (MQ=255)
                                                                                                                                                                                                                                                   cACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGt                                                                                                                                      <  2:1963356/182‑1 (MQ=255)
                                                                                                                                                                                                                                                   cACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGt                                                                                                                                      >  1:1963356/1‑182 (MQ=255)
                                                                                                                                                                                                                                                        aTGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGTTGGTATTGTGAAAGGGAATTTTGCGTCGTAAGCGGGAGCGCAACCCAGTAAAACTCTTCGATGACATCGGTGTACaa                                                         >  2:1766952/1‑254 (MQ=255)
                                                                                                                                                                                                                                                                  tcatcGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGTTGGTATTGTGAAAGGGAATTTTGCGTCGTAAGCGGGAGCGCAACCCAGTAAAACTCTTCGAGGACATCGGTGTACAACTCGCGCAGGGACTGAACATAGTTAATGGTGAAAGAGAATTgcg             >  2:178766/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                  tcatcGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGTTGGTATTGTGAAAGGGAATTTTGCGTCGGAAGCGGGAGCGCAACCCAGTAAAACTCTTCGTATACATCGGTGTACAACCGCCTCAGGGACTGAACATAGGTAATGGTGAGAGAGaagttcg             >  2:599939/1‑283 (MQ=255)
                                                                                                                                                                                                                                                                      cgccgcCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGTTGGTATTGTGAAAGGGAATTTTGCGTCGTAAGCGGGAGCGCAACCCAGTAAAACTCTTCGATGACATCGGTGTACAACTCGCGCAGGGACTGAAc                                       <  1:588470/258‑1 (MQ=255)
                                                                                                                                                                                                                                                                        ccgccgGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGTTGGTATTGTGAAAGGGAATTTTGCGTCGTAAGCGGGAGCGCAACCCAGTAAAACTCTTCGATGACATCGGTGTACAACTCGCGCAGGGACTGAACATAGTTAATGGTGCAAGAGAATTGCGCCTCCCa      >  2:2053231/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                           ccgGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGTTGGTATTGTGAAAGGGAATTTTGCGTCGTAAGCGGGAGCGCAACCCAGTAAAACTCTTCGATGACATCGGTGTACAACTCGCGCAGGGACTGAACATAGTTAATGGTGCAAGAGAATTGCGCCTCCCAGTc   >  2:1119709/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                                        |||                                                                                                                                                                                                                                                                                  
AAGGTTCGCAAATTCGCATATGACGCAGAGGAACGCCTGCCTGATACATTAGGTTATACAGTGGGTTGCAGAGACTTTGATGATTTGCATACCAGGTCCAGATATCAGCCACTTTCCAGTCGTAAATGGGGTAAATGTACCAGCTATGACCGCCTGGTGCGGCCGTAGTCCAGGGTTTATCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGACTAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGTTGGTATTGACTAAGGGAATTTTGCGTCGTAAGCGGGAGCGCAACCCAGTAAAACTCTTCGATGACATCGGTGTACAACTCGCGCAGGGACTGAACATAGTTAATGGTGCAAGAGAATTGCGCCTCCCAGTCG  >  CP042583/509392‑509948

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A