Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 4926 296.4 4517418 96.8% 4372860 264.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 589,927 3 bp→TGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP042583589,9270AT99.4% 834.5 / NA 350intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base A (0/0);  major base T (172/176);  minor base G (1/1);  total (173/177)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP042583589,9280CG99.4% 818.4 / NA 350intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (1/1);  new base G (171/175);  total (173/177)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP042583589,9290TA100.0% 836.0 / NA 350intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base A (173/177);  total (173/177)

Only 100 of 351 total aligned reads displayed.

CGTTGAACTGACTGTTTAGGCTCGGGCTAATGGTCATCAGTGCCAATCCACTCTGAATAATCACAATGGTCAACATTCCCTGCACCGGTGCATCCACTTTGGTTACACGGGAGAAAATTTTAGGGAAGTAGCCTTCATCAGAACTAGATTTAAACACCTGGGCAATGGTGAACTGCCAGCCAAGTAGGC‑TAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTACTATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCACATTACGTTCCGGGTTTTCCACTACATCAGTATTCGCACACGCAGACTCCAGACCAAGAAAAGCCCACAGCGTCATAGCGATGGAAGAACCTACCGCACTGAAGAACGGTGCATGATGCGGATTCCAGGAATCAACGTACAGCGTCGGGCTAAACCAGAACCAGCCAATAATGC  >  CP042583/589647‑590204
                                                                                                                                                                                                                                                                                           |||                                                                                                                                                                                                                                                                                   
   tGAACTGACTGTTTAGCGACGGGCTAATGGTCATCAGTGCCAATCCACTCTGAATAATCACAATGGTCAACATTCCCTGCACCGGTGCATCCACTTTGGTTACACGGGAGAAAATTTTAGGGAAGTAGCCTTCATCAGATGAAGATTTAAACACCTGGGCAATGGTGAACTGCCAGCCAAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCa                                                                                                                                                                                                                                                                             >  2:648521/1‑288 (MQ=255)
   tGAACTGACTGTTTAGCGACGGGCTAATGGTCATCAGTGCCAATCCACTCTGAATAATCACAATGGTCAACATTCCCTGCACCGGTGCATCCACTTTGGTTACACGGGAGAAAATTTTAGGGAAGTAGCCTTCATCAGATGAAGATTTAAACACCTGGGCAATGGTGAACTGCCAGCCAAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCCGCGCGAAGGCCAGACCAAATGGGTCCGTTGAATTTGCCa                                                                                                                                                                                                                                                                             >  2:47646/1‑288 (MQ=255)
                 agcgacGGGCTAATGGTCATCAGTGCCAATCCACTCTGAATAATCACAATGGTCAACATTCCCTGCACCGGTGCATCCACTTTGGTTACACGGGAGAAAATTTTAGGGAAGTAGCCTTCATCAGATGAAGATTTAAACACCTGGGCAATGGTGAACTGCCAGCCAAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGca                                                                                                                                                                                                                                                              <  1:495018/284‑1 (MQ=255)
                              tGGTCATCAGTGCCAATCCACTCTGAATAATCACAATGGTCAACATTCCCTGCACCGGTGCATCCACTTTGGTTACACGGGAGAAAATTTTAGGGAAGTAGCCTTCATCAGATGAAGATTTAAACACCTGGGCAATGGTGAACTGCCAGCCAAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAAt                                                                                                                                                                                                                                                 <  2:1061305/289‑1 (MQ=255)
                                     caGTGCCAATCCACTCTGAATAATCACAATGGTCAACATTCCCTGCACCGGTGCATCCACTTTGGTTACACGGGAGAAAATTTTAGGGAAGTAGCCTTCATCAGATGAAGATTTAAACACCTGGGCAATGGTGAACTGCCAGCCAAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTcc                                                                                                                                                                                                                                                                        >  1:573786/1‑259 (MQ=255)
                                        tGCCAATCCACTCTGAATAATCACAATGGTCAACATTCCCTGCACCGGTGCATCCACTTTGGTTACACGGGAGAAAATTTTAGGGAAGTAGCCTTCATCAGATGAAGATTTAAACACCTGGGCAATGGTGAACTGCCAGCCAAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTtggtg                                                                                                                                                                                                                                       >  1:2084673/1‑289 (MQ=255)
                                           cagtccaacctGAATAAGGACAATGGTCACACTTCCCTGCACCGGTGAATCAGATTTGGTTACCCGGGAGAAAATTTTGTGGAAGTAGCCTTCATCAGATGAAGATTTAAACACCTGGGCAATGGTGAACTGCCAGCCAAGTCGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGga                                                                                                                                                                                                                                     <  2:173378/279‑1 (MQ=255)
                                                  ctctGAATAATCACAATGGTCAACATTCCCTGCACCGGTGCATCCACTTTGGTTACACGGGAGAAAATTTTAGGGAAGTAGCCTTCATCAGATGAAGATTTAAACACCTGGGCAATGGTGAACTGCCAGCCAAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATGTTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGatat                                                                                                                                                                                                                             >  1:1499417/1‑289 (MQ=255)
                                                  ctctGAATAATCACAATGGTCAACATTCCCTGCACCGGTGCATCCACTTTGGTTACACGGGAGAAAATTTTAGGGAAGTAGCCTTCATCAGATGAAGATTTAAACACCTGGGCAATGGTGAACTGCCAGCCAAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGatat                                                                                                                                                                                                                             >  2:1827941/1‑289 (MQ=255)
                                                      gAATAATCACAATGGTCAACATTCCCTGCACCGGTGCATCCACTTTGGTTACACGGGAGAAAATTTTAGGGAAGTAGCCTTCATCAGATGAAGATTTAAACACCTGGGCAATGGTGAACTGCCAGCCAAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAAt                                                                                                                                                                                                                         <  1:1751097/289‑1 (MQ=255)
                                                             cacaATGGTCAACATTCCCTGCACCGGTGCATCCACTTTGGTTACACGGGAGAAAATTTTAGGGAAGTAGCCTTCATCAGATGAAGATTTAAACACCTGGGCAATGGTGAACTGCCAGCCAAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCAccgcc                                                                                                                                                                                                                  <  1:1071669/289‑1 (MQ=255)
                                                             cacaATGGTCAACATTCCCTGCACCGGTGCATCCACTTTGGTTACACGGGAGAAAATTTTAGGGAAGTAGCCTTCATCAGATGAAGATTTAAACACCTGGGCAATGGTGAACTGCCAGCCAAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCAccgcc                                                                                                                                                                                                                  <  1:376567/289‑1 (MQ=255)
                                                                 aTGGTCAACATTCCCTGCACCGGTGCATCCACTTTGGTTACACGGGAGAAAATTTTAGGGAAGTAGCCTTCATCAGATGAAGATTTAAACACCTGGGCAATGGTGAACTGCCAGCCAAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGACTTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCa                                                                                                                                                                                                               >  1:1218201/1‑288 (MQ=255)
                                                                 aTGGTCAACATTCCCTGCACCGGTGCATCCACTTTGGTTACACGGGAGAAAATTTTAGGGAAGTAGCCTTCATCAGATGAAGATTTAAACACCTGGGCAATGGTGAACTGCCAGCCAAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCCGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGAtatactgtctcttataa                                                                                                                                                                                                               >  1:1380525/1‑275 (MQ=255)
                                                                  tGGTCAACATTCCCTGCACCGGTGCATCCACTTTGGTTACACGGGAGAAAATTTTAGGGAAGTAGCCTTCATCAGATGAAGATTTAAACACCTGGGCAATGGTGAACTGCCAGCCAAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCAcc                                                                                                                                                                                                             <  2:692724/289‑1 (MQ=255)
                                                                             cccTGCACCGGTGCATCCACTTTGGTTACACGGGAGAAAATTTTAGGGAAGTAGCCTTCATCAGATGAAGATTTAAACACCTGGGCAATGGTGAACTGCCAGCCAAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTAccgc                                                                                                                                                                                                  <  2:1570228/289‑1 (MQ=255)
                                                                              ccTGCACCGGTGCATCCACTTTGGTTACACGGGAGAAAATTTTAGGGAAGTAGCCTTCATCAGATGAAGATTTAAACACCTGGGCAATGGTGAACTGCCAGCCAAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGc                                                                                                                                                                                                                                                                               <  1:1951672/211‑1 (MQ=255)
                                                                              ccTGCACCGGTGCATCCACTTTGGTTACACGGGAGAAAATTTTAGGGAAGTAGCCTTCATCAGATGAAGATTTAAACACCTGGGCAATGGTGAACTGCCAGCCAAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACg                                                                                                                                                                                                                                 <  2:2047656/257‑1 (MQ=255)
                                                                              ccTGCACCGGTGCATCCACTTTGGTTACACGGGAGAAAATTTTAGGGAAGTAGCCTTCATCAGATGAAGATTTAAACACCTGGGCAATGGTGAACTGCCAGCCAAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTAccgcc                                                                                                                                                                                                 <  1:632593/289‑1 (MQ=255)
                                                                              ccTGCACCGGTGCATCCACTTTGGTTACACGGGAGAAAATTTTAGGGAAGTAGCCTTCATCAGATGAAGATTTAAACACCTGGGCAATGGTGAACTGCCAGCCAAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTAccgcc                                                                                                                                                                                                 >  2:236782/1‑289 (MQ=255)
                                                                              ccTGCACCGGTGCATCCACTTTGGTTACACGGGAGAAAATTTTAGGGAAGTAGCCTTCATCAGATGAAGATTTAAACACCTGGGCAATGGTGAACTGCCAGCCAAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTAccgcc                                                                                                                                                                                                 >  1:39417/1‑289 (MQ=255)
                                                                              ccTGCACCGGTGCATCCACTTTGGTTACACGGGAGAAAATTTTAGGGAAGTAGCCTTCATCAGATGAAGATTTAAACACCTGGGCAATGGTGAACTGCCAGCCAAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTAccgc                                                                                                                                                                                                  >  2:509093/1‑288 (MQ=255)
                                                                                       gTGCATCCACTTTGGTTACACGGGAGAAAATTTTAGGGAAGTAGCCTTCATCAGATGAAGATTTAAACACCTGGGCAATGGTGAACTGCCAGCCAAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTa                                                                                                                                                                                                      >  1:886347/1‑275 (MQ=255)
                                                                                       gTGCATCCACTTTGGTTACACGGGAGAAAATTTTAGGGAAGTAGCCTTCATCAGATGAAGATTTAAACACCTGGGCAATGGTGAACTGCCAGCCAAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACcgc                                                                                                                                                                                        >  1:2143693/1‑289 (MQ=255)
                                                                                       gTGCATCCACTTTGGTTACACGGGAGAAAATTTTAGGGAAGTAGCCTTCATCAGATGAAGATTTAAACACCTGGGCAATGGTGAACTGCCAGCCAAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCCATTAcct                                                                                                                                                                                         >  2:1140466/1‑287 (MQ=255)
                                                                                           aTCCACTTTGGTTACACGGGAGAAAATTTTAGGGAAGTAGCCTTCATCAGATGAAGATTTAAACACCTGGGCAATGGTGAACTGCCAGCCAAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGAt                                                                                                                                                                                     <  1:1982497/288‑1 (MQ=255)
                                                                                                 tttGGTTACACGGGAGAAAATTTTAGGGAAGTAGCCTTCATCAGATGAAGATTTAAACACCTGGGCAATGGTGAACTGCCAGCCAAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGcaca                                                                                                                                                                              >  1:1459569/1‑289 (MQ=255)
                                                                                                   tGGTTACACGGGAGAAAATTTTAGGGAAGTAGCCTTCATCAGATGAAGATTTAAACACCTGGGCAATGGTGAACTGCCAGCCAAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCACAtt                                                                                                                                                                            <  2:315866/289‑1 (MQ=255)
                                                                                                        acacGGGAGAAAATTTTAGGGAAGTAGCCTTCATCAGATGAAGATTTAAACACCTGGGCAATGGTGAACTGCCAGCCAAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGCCCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGAAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTACCGTCCCGCCGAGTACCGCGATTGCCACATTACGt                                                                                                                                                                        >  2:1697608/1‑288 (MQ=255)
                                                                                                           cGGGAGAAAATTTTAGGGAAGTAGCCTTCATCAGATGAAGATTTAAACACCTGGGCAATGGTGAACTGCCAGCCAAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCACATTACGTTCCg                                                                                                                                                                    >  2:1181657/1‑289 (MQ=255)
                                                                                                              gagaAAATTTTAGGGAAGTAGCCTTCATCAGATGAAGATTTAAACACCTGGGCAATGGTGAACTGCCAGCCAAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTAccgcc                                                                                                                                                                                                 <  1:693632/257‑1 (MQ=255)
                                                                                                              gagaAAATTTTAGGGAAGTAGCCTTCATCAGATGAAGATTTAAACACCTGGGCAATGGTGAACTGCCAGCCAAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCACATTACGTTCCggg                                                                                                                                                                  <  1:968022/288‑1 (MQ=255)
                                                                                                                     ttttAGGGAAGTAGCCTTCATCAGATGAAGATTTAAACACCTGGGCAATGGTGAACTGCCAGCCAAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCACATTACGTTCCGGGTTTTCCAc                                                                                                                                                          <  1:509093/289‑1 (MQ=255)
                                                                                                                        tAGGGAAGTAGCCTTCATCAGATGAAGATTTAAACACCTGGGCAATGGTGAACTGCCAGCCAAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGAGATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCTATCAGCCCATTACGACCCCGGTTTTcacataa                                                                                                                                                       >  2:1440278/1‑283 (MQ=255)
                                                                                                                            gaagaaGCCCTCAACAGATGGAGATTTAAACACCTGAACAATGGTGAACTGCCAGACAATTA‑GC‑GACTCTCAGCCAGACATCACCATCAGGTCCTTAATGACTTTACCCCCTTCC‑GCCTGAATAAACTGCGCAAAGGCCGATCCAAATGGTGCCGTTGAATTTGCCAGCTCCGTATATGCCAAAATCCCGGCAATCACTTTGCTGGAGACGATATAAAGCACCGCCGCACCTTACGTACCGCCGAGTACCGCGATTGGCACATTACGTTCCGGGTGTTCCACTACAt                                                                                                                                                     <  2:405419/287‑1 (MQ=255)
                                                                                                                                      tcatcaGATGAAGATTTAAACACCTGGGCAATGGTGAACTGCCAGCCAAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACg                                                                                                                                                                                                                                             >  2:2102304/1‑189 (MQ=255)
                                                                                                                                        atcagatgaaGATTTAAACACCTGGGCAATGGTGAACTGCCAGCCAAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCACATTACGTTCCGGGTTTTCCACTACATCAGTATTCGcaca                                                                                                                                        >  1:1314032/10‑288 (MQ=255)
                                                                                                                                          cagattaagctttAAAGCCCTGGGCAATGGTGAACGGCCAGCCAAGTAGCG‑AAC‑CGCAGCAGGGCATCACCATCAGCGCCATAATGACGTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCACATTACGTTCCGGGTTTTCCACTACATCAGTATTCGCACACGc                                                                                                                                     <  2:1459569/279‑1 (MQ=255)
                                                                                                                                          cagatgaaGATTTAAACACCTGGGCAATGGTGAACTGCCAGCCAAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCACATTACGTTCCGGGTTTTCCACTACATCAGTATTCGCACACGc                                                                                                                                     <  1:1871991/282‑1 (MQ=255)
                                                                                                                                          cacaaaaaGATTAAAACATCTGGGACATGTGGAAGTGCAAGCCAGGTAGCG‑AAC‑CGCAGCAGGACACCCCCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGGGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCACATTACGTTCCGGGTTTTCCACTACATCAGTATTCGCACACGc                                                                                                                                     <  2:924915/282‑1 (MQ=255)
                                                                                                                                           agatgaaGATTTAAACACCTGGGCAATGGTGAACTGCCAGCCAAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCACATTACGTTCCGGGTTTTCCACTACATCAGTATTCGCACACGCa                                                                                                                                    <  2:451900/283‑1 (MQ=255)
                                                                                                                                              tgaaGATTTAAACACCTGGGCAATGGTGAACTGCCAGCCAAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCACATTACGTTCCGGGTTTTCCACTACATCAGTATTCGCACACGCa                                                                                                                                    <  1:450025/283‑1 (MQ=255)
                                                                                                                                              tgaaGATTTAAACACCTGGGCAATGGTGAACTGCCAGCCAAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCACATTACGTTCCGGGTTTTCCACTACATCAGTATTCGCACACGCa                                                                                                                                    <  1:1599802/283‑1 (MQ=255)
                                                                                                                                                aaGATTTAAACACCTGGGCAATGGTGAACTGCCAGCCAAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGCGTACCGCGATTGGCACCTTACGTTCCGGGTTTTCCACTACATCCGTATTCGCACACGCaacct                                                                                                                                >  2:666662/2‑284 (MQ=255)
                                                                                                                                                aaGATTTAAACACCTGGGCAATGGTGAACTGCCAGCCAAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCACATTACGTTCCGGGTTTTCCACTACATCAGTATTCGCACACGCAGACt                                                                                                                                >  2:957910/2‑288 (MQ=255)
                                                                                                                                                aaGATTTAAACACCTGGGCAATGGTGAACTGCCAGCCAAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCACATTACGTTCCGGGTTTTCCACTACATCAGTATTCGCACACGCAGACTc                                                                                                                               <  2:187461/288‑1 (MQ=255)
                                                                                                                                                 aGATTTAAACACCTGGGCAATGGTGAACTGCCAGCCAAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCACATTACGTTCCGGGTTTTCCACTACATCAGTATTCGCACACGCAGACTc                                                                                                                               <  2:158695/288‑1 (MQ=255)
                                                                                                                                                  gATTTAAACACCTGGGCAATGGTGAACTGCCAGCCAAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGc                                                                                                                                                                                                                                                                               <  1:935610/143‑1 (MQ=255)
                                                                                                                                                  gATTTAAACACCTGGGCAATGGTGAACTGCCAGCCAAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGc                                                                                                                                                                                                                                                                               >  2:935610/1‑143 (MQ=255)
                                                                                                                                                       aaaCACCTGGGCAATGGTGAACTGCCAGCCAAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCAccgcc                                                                                                                                                                                                                  <  1:947449/199‑1 (MQ=255)
                                                                                                                                                       aaaCACCTGGGCAATGGTGAACTGCCAGCCAAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGAt                                                                                                                                                                                     >  1:1286164/1‑228 (MQ=255)
                                                                                                                                                           acCTGGGCAATGGTGAACTGCCAGCCAAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCACATTACGTTCCGGGTTTTCCACTACATCAGTATTCGCACACGCAGACTCCAGACCAAGaa                                                                                                                    <  1:794466/289‑1 (MQ=255)
                                                                                                                                                               gggCAATGGTGAACTGCCAGCCAAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCACATTACGTTCCGGGTTTTCCACTACATCAGTATTCGCACACGCAGACTCCAGACCAAGAAAAg                                                                                                                 >  1:1162307/1‑288 (MQ=255)
                                                                                                                                                               gggCAATGGTGAACTGCCAGCCAAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCACATTACGTTCCGGGCTTTCCACTACATCAGTATTCGCACACGCAGACTCCAAAc                                                                                                                          >  1:659546/1‑279 (MQ=255)
                                                                                                                                                                 caaaTGGTGAACTGCCAGCACAGTAGCG‑ACC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTCACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTCCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCACATTACGTTCCGGTTTTTCCACTACATCAGTATTCGCACACGCAGACTCCAGACCAAGAAAAGcc                                                                                                               <  1:594113/286‑1 (MQ=255)
                                                                                                                                                                   aaTGGTGAACTGCCAGCCAAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCACATTACGTTCCGGGTTTTCCACTACATCAGTATTCGCACACGCAGACTCCAGACCAAGAAAAGCCca                                                                                                             <  1:1716913/288‑1 (MQ=255)
                                                                                                                                                                   aaTGGTGAACTGCCAGCCAAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCACATTACGTTCCGGGTTTTCCACTACATCAGTATTCGCACACGCAGACTCCAGACCAAGAAAAGCCca                                                                                                             <  2:568451/288‑1 (MQ=255)
                                                                                                                                                                    agggTGAACTG‑CAGCTAAGTAGGCGAAC‑CGGAGTAGAATATCCCCCTCAGCGCCATAATGACTTTCCCCACTTCCTGCTTGAA‑CCCATGCGCGGAGGCCAGACCAAATGGTGCCGTTGATTTTGCCGTCTCCATATATGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTAGCGCCGAGTACCGCGATTGGCACATTACGTTCCGGGTTTTCCACTACATCAGTATTCGCACACGCAGACTCCAGACCAAGAAAAGCCcaca                                                                                                           <  2:88162/287‑1 (MQ=255)
                                                                                                                                                                    aTGGTGAACTGCCAGCCAAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCACATTACGTTCCGGGTTTTCCACTACATCAGTATTCGCACACGCAGACTCCAGACCAAGAAAAGCCcaca                                                                                                           <  1:469829/289‑1 (MQ=255)
                                                                                                                                                                     tGGTGAACTGCCAGCCAAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCACATTACGTTCCGGGTTTTCCa                                                                                                                                                           >  1:1181666/1‑240 (MQ=255)
                                                                                                                                                                       gTGAACTGCCAGCCAAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTAccg                                                                                                                                                                                                   <  1:211519/198‑1 (MQ=255)
                                                                                                                                                                       gTGAACTGCCAGCCAAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCACATTACGTTCCGGGTTTTCCACTACATCAGTATTCGCACACGCa                                                                                                                                    >  1:1125497/1‑261 (MQ=255)
                                                                                                                                                                       gTGAACTGCCAGCCAAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCACATTACGTTCCGGGTTTTCCACTACATCAGTATTCGCACACGCa                                                                                                                                    <  2:1125497/261‑1 (MQ=255)
                                                                                                                                                                       gTGAACTGCCAGCCAAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCACATTACGTTCCGGGTTTTCCACTACATCAGTATTCGCACACGCAGACTCCAGACCAAGAAAAGCCCACAGc                                                                                                         >  1:1632899/1‑288 (MQ=255)
                                                                                                                                                                          aaCTGCCAGCCAAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCACATTACGTTCCGGGTTTTCCACTACATCAGTATTCGCACACGCAGACTCCAGACCAAGAAAAGCCca                                                                                                             >  1:814632/1‑281 (MQ=255)
                                                                                                                                                                             tGCCCGCCACGTAGCC‑AAC‑CGCAGCACGACATAACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCACATTACGTTCCGGGTTTTCCACTACATCAGTATTCGCACACGCAGACTCCAGACCAAGAAAAGCCCACAGCGTCATAg                                                                                                  <  2:2118885/289‑1 (MQ=255)
                                                                                                                                                                               ccagccaAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCACATTACGTTCCGGGTTTTCCACTACATCAGTATTCGCACACGCAGACTCCAGACCAAGAAAAGCCCACAGCGTCATAGCg                                                                                                >  2:1251392/1‑289 (MQ=255)
                                                                                                                                                                               ccagccaAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCACATTACGTTCCGGGTTTTCCACTACATCAGTATTCGCACACGCAGACTCCAGAACAAGAAAAGCCCACAGCGTCATAGCg                                                                                                >  2:1542307/1‑289 (MQ=255)
                                                                                                                                                                                    caAGTAGCG‑AAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCGGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCACATTACGTTCCGGGTTTTCCACTACATCAGTATTCGCACACGCAGACTCCAGACCAAGAAAAGCCCACAGCGTCATAGCGATGga                                                                                           <  2:1314032/289‑1 (MQ=255)
                                                                                                                                                                                              aaC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCACATTACGTTCCGGGTTTTCCACTACCACAGGATTCGCACACGCAGACCCCAAACCAAGAACAACCCACACCGTCATACGAATGGAAGAAACtc                                                                                   >  2:2024392/2‑287 (MQ=255)
                                                                                                                                                                                                c‑cGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCACATTACGTTCCGGGTTTTCCACTACATCAGTATTCGCACACGCAGACTCCAGACCAAGAAAAGCCCACAGCGTCATAGCGATGGAAGAACCTACCg                                                                                <  2:946871/289‑1 (MQ=255)
                                                                                                                                                                                                    cagcagGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCACATTACGTTCCGGGTTTTCCACTACATCAGTCTTCGCCCACGCAGACTCCCGACCACGACAAGCCCACAGCGTCAGAGCGATGGAAGAACCTACCGcc                                                                              >  2:1003299/1‑287 (MQ=255)
                                                                                                                                                                                                       cagGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCACATTACGTTCCGGGTTTTCCACTACATCAGTATTCGCACACGCAGACTCCAGACCAAGAAAAGCCCACAGCGTCATAGCGATGGAAGAACCTACCGAACTga                                                                          >  1:299585/1‑289 (MQ=255)
                                                                                                                                                                                                           aCATCACCCTCAGCGCCATAATGCCTTTCCCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCACATTACGTTCCGGGTTTTCCACTACATCAGTATTCGCACACGCAGACTCCAGACCAAGAAAAGCCCACAGCGTCATAGCGATGGAAGAACCTACCGCACTgaa                                                                         <  2:377305/286‑1 (MQ=255)
                                                                                                                                                                                                            caccACCATCAGCGCCATACTGCCTTGACCCCCTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCACATTACGTTCCGGGTTTTCCACTACATCAGTATTCGCACACGCAGACTCCAGACCAAGAAAAGCCCACAGCGTCATAGCGATGGAAGAACCTACCGCACTGAAGAAc                                                                     <  2:729963/286‑1 (MQ=255)
                                                                                                                                                                                                            cATCACCACCACGACCATAACGACTTTACCCCGTTCCGGCGTAAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTACATATTTGGCCCAATCCCGGCAATCACGTGGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCACATTACGTTCCGGGTTTTCCACTACATCAGTATTCGCACACGCAGACTCCAGACCAAGAAAAGCCCACAGCGTCATAGCGATGGAAGAACCTACCGCACTgaagaa                                                                      <  2:811879/288‑1 (MQ=255)
                                                                                                                                                                                                               cACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCACATTACGTTCCGGGTTTTCCACTACATCAGTATTCGCACACGCa                                                                                                                                    >  2:263718/1‑223 (MQ=255)
                                                                                                                                                                                                               cACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCACATTACGTTCCGGGTTTTCCACTACATCAGTATTCGCACACGCa                                                                                                                                    <  1:263718/223‑1 (MQ=255)
                                                                                                                                                                                                               cACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCACATTACGTTCCGGGTTTTCCACTACATCAGTATTCGCACACGCAGACTCCAGACCAAGAAAAGCCCACAGCGTCATAGCGATGGAAGAACCTACCGCACTGAAGAACGGt                                                                  <  1:1826569/289‑1 (MQ=255)
                                                                                                                                                                                                                       gcgcCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCACATTACGTTCCGGGTTTTCCACTACATCAGTATTCGCACACGCAGACTCCAGACCAAGAAAAGCCCACAGCGTCATAGCGATGGAAGAACCTACCGCACTGAAGAACGGTGCatgat                                                           >  1:2038841/1‑288 (MQ=255)
                                                                                                                                                                                                                       gcgcCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCACATTACGTTCCGGGTTTTCCACTACATCAGTATTCGCACACGCAGACTCCAGACCAAGAAAAGCCCACAGCGTCATAGCGATGGAAGAACCTACCGCACTGAAAAACGGTGCatgat                                                           >  1:914549/1‑288 (MQ=255)
                                                                                                                                                                                                                            aTAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCACATTACGTTCCGGGTTTTCCACTACATCAGTATTCGCACACGCAGACTCCAGACCAAGAAAAGCCCACAGCGTCATAGCGATGGAAGAACCTACCGCACTgaagaa                                                                      <  2:1368175/272‑1 (MQ=255)
                                                                                                                                                                                                                            aTAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACAATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCACATTACGTTCCGGGTTTTCCACTACATCAGTATTCGCACACGCAGACTCCAGACCAAGAAAAGCCCACAGCGTCATAGCGATGGAAGAACCTACCGCACTGAAGAACGGTGCATGATGCGGAt                                                     >  1:761779/1‑289 (MQ=255)
                                                                                                                                                                                                                                  aCTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCACATTACGTTCCGGGTTTTCCACTACATCAGTATTCGcac                                                                                                                                         >  2:754752/1‑199 (MQ=255)
                                                                                                                                                                                                                                       tccccgtcccGGAGTGAC‑CATCTGCGCGAAGGACAGACGCGATGGTACCGTTGATTTTGCCCGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGGGGACACGGTATAAATCCCCGCCGCCCCTAACGTACCGCCTAGTACCGCGATTGGCACGTTACGTTCCGGGTTTGCCACTACAGCAGTATTCGCGCACGCAGACTCCAGACCAAGAAAAGCCCACAGCGTCATAGCGATGGAAGAACCTACCGCACTGAAGAACGGTGCATGATGCGGATTCCAGGAATCa                                          <  2:1613311/281‑1 (MQ=255)
                                                                                                                                                                                                                                       aCCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACCATCCCGGCAATCACGTTTGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCCCATTACGTTCCCGGTTTTCCACTACATCAGTATTCGCACACGCAGACTCCAGACCAAGAAAAGCCCACAGCGTCTTAACCATGGAAGCACCTACCGCACTGAAAAACGGATCCTGATCCGGATTCCAggcctca                                          >  2:2220461/1‑284 (MQ=255)
                                                                                                                                                                                                                                             ttCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCACATTACGTTCCGGGTTTTCCACTACATCAGTATTCGCACACCCAGAATCCAGCCCAAGAAAAGCCCACAGCGTCATAGCGATGGAAGAAACTACCGCCATGAAGAACGGTTCATGAGTCGGTTTCCAGGAACAAACggaa                                    >  2:787400/1‑286 (MQ=255)
                                                                                                                                                                                                                                                  gCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCACATTACGTTCCGGGTTTTCCACTACATCAGTATTCGCACACGCAGACTCCAGACCAAGAAAAGCCCACAGCGTCATAGCGATGGAAGAACCTACCGCACTGAAGAACGGTGCATGATGCGGATTCCAGGAATCAACGTACAGCg                                >  1:738213/1‑288 (MQ=255)
                                                                                                                                                                                                                                                       aa‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCACAtt                                                                                                                                                                            <  2:915426/143‑1 (MQ=255)
                                                                                                                                                                                                                                                       aa‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCACATTACGTTCCGGGTTTTCCACTACAt                                                                                                                                                     >  2:606388/1‑166 (MQ=255)
                                                                                                                                                                                                                                                       aa‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCACATTACGTTCCGGGTTTTCCACTACATCAGTATTCGCACACGCAGACTCCAGACCAAGAAAAGCCCACAGCGTCATAGCGATGGAAGAACCTACCGCACTGAAGAACGGTGCATGATGCGGATTCCAGGAATCAACGTACAGCGTCgg                            >  1:220082/1‑287 (MQ=255)
                                                                                                                                                                                                                                                       aa‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCACATTACGTTCCGGGTTTTCCACTACATCAGTATTCGCACACGCAGACTCCAGACCAAGAAAAGCCCACAGCGTCATAGCGATGGAAGAACCTACCGCACTGAAGAACGGTGCATGATGCGGATTCCAGGAATCAACGTACAGCGTCGGGc                          <  1:1256376/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                cgcgAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCACATTACGTTCCGGGTTTTCCACTACATCAGTATTCGCACACGCAGACTCCAGACCAAGAAAAGCCCACAGCGTCATAGCGATGGAAGAACCTACCGCACTGAAGAACGGTGCATGATGCg                                                        >  1:86563/1‑251 (MQ=255)
                                                                                                                                                                                                                                                                cgcgAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCACATTACGTTCCGGGTTTTCCACTACATCAGTATTCGCACACGCAGACTCCAGACCAAGAAAAGCCCACAGCGTCATAGCGATGGAAGAACCTACCGCACTGAAGAACGGTGCATGATGCg                                                        <  2:86563/251‑1 (MQ=255)
                                                                                                                                                                                                                                                                cgcgAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCACATTACGTTCCGGGTTTTCCACTACATCAGTATTCGCACACGCAGACTCCAGACCAAGAAAAGCCCACAGCGTCATAGCGATGGAAGAACCTACCGCACTGAAGAACGGTGCATGATGCGGATTCCAGGAATCAACGTACAGCGTCGGGCTAaaccag                  >  1:1363583/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                  cgAAGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCACATTACGTTCCGGGTTTTCCACTACATCAGTATTCGCACACGCAGACTCCAGACCAAGAAAAGCCCACAGCGTCATAGCGATGGAAGAACCTACCGCACTGAAGAACGGTGCATGATGCGGATTCCAGGAATCAACGTACAGCGTCGGGCTAaaccaga                 >  1:1004764/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                   gAAGGCCAGACCAAGTGGTGCCGTTGACTTTGCCCACTCCATAGTTGGCCGACTCCCGGCAATCACGTGGGTGGAGACGATCTAAATCACCGCCGCGCCTAACGTACCGCCGAGTACCGCGATTGGCACATTACGGTCCGGGTTTTCCACTACATCAGTATTCGCACACGCAGACTCCAGACCAAGAAAAGCCCACAGCGTCAGAGCGATGGAAGAACCTACCGCACTGAAGAACGGTGCATGATGCGGATTCCAGGAATCAACGTACAGCGTCGGGCTAaaccagaa                <  2:1218201/288‑1 (MQ=255)
                                                                                                                                                                                                                                                                    aaGGGCAGACCAAATGATGCCGTGAAATTGGCCAGCTCCATATGTGGCACAAACCCGGCAATAACGTTGGTGGGGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCACATTACGTTCCGGGTTTTCCACTACATCAGTATTCGCACACGCAGACTCCAGACCAAGAAAAGCCCACAGCGTCATAGCGATGGAAGAACCTACCGCACTGAAGAACGGTGCATGATGCGGATTCCAGGAATCAACGTACAGCGTCGGGCTAaaccagaacc              <  2:1270821/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                    aaGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCACATTACGTTCCGGGTTTTCCACTACATCAGTATTCGCACACGCAGACTCCAGACCAAGAAAAGCCCACAGCGTCATAGCGATGGAAGAACCTACCGCACTGAAGAACGGTGCATGATGCGGATTCCAGGAATCAACGTACAGCGTCGGGCTAaaccagaacc              <  1:1140466/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                     aGGCCAGACCAAATGGTGCCGTTGAATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCACATTACGTTCCGGGTTTTCCACTACATCAGTATTCGCACACGCAGACTCCAGACCAAGAAAAGCCCACAGCGTCATAGCGATGGAAGAACCTACCGCACTGAAGAACGGTGCATGATGCGGATTCCAGGAATCAACGTACAGCGTCGGGCTAaaccagaacca             >  1:2048265/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                                           |||                                                                                                                                                                                                                                                                                   
CGTTGAACTGACTGTTTAGGCTCGGGCTAATGGTCATCAGTGCCAATCCACTCTGAATAATCACAATGGTCAACATTCCCTGCACCGGTGCATCCACTTTGGTTACACGGGAGAAAATTTTAGGGAAGTAGCCTTCATCAGAACTAGATTTAAACACCTGGGCAATGGTGAACTGCCAGCCAAGTAGGC‑TAC‑CGCAGCAGGACATCACCATCAGCGCCATAATGACTTTACCCACTTCCGGCGTGAA‑CATCTGCGCGAAGGCCAGACCAAATGGTGCCGTACTATTTGCCAGCTCCATATTTGGCACAATCCCGGCAATCACGTTGGTGGAGACGATATAAATCACCGCCGCACCTAACGTACCGCCGAGTACCGCGATTGGCACATTACGTTCCGGGTTTTCCACTACATCAGTATTCGCACACGCAGACTCCAGACCAAGAAAAGCCCACAGCGTCATAGCGATGGAAGAACCTACCGCACTGAAGAACGGTGCATGATGCGGATTCCAGGAATCAACGTACAGCGTCGGGCTAAACCAGAACCAGCCAATAATGC  >  CP042583/589647‑590204

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A