Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 4926 296.4 4517418 96.8% 4372860 264.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC CP042583 1,523,918 Δ35 bp intergenic (–/–) – / – –/–

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ CP042583 1523918 1523952 35 259 [0] [1] 259 –/– –/–

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP042583 = 15239170 (0.000)229 (0.910) 114/458 0.5 100% intergenic (–/–) –/– –/–
?CP042583 1523953 = 0 (0.000)intergenic (–/–) –/– –/–

GATK/CNVnator alignment

N/A