Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 4926 296.4 4517418 96.8% 4372860 264.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,539,199 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,539,1990GC99.7% 712.8 / NA 306intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (1/0);  new base C (157/147);  total (159/147)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01
*CP0425831,539,2000CG99.7% 722.3 / NA 306intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/0);  major base G (158/147);  minor base T (1/0);  total (159/147)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01
*CP0425831,539,2010TA99.7% 722.8 / NA 306intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/1);  new base A (159/146);  total (159/147)
Fisher's exact test for biased strand distribution p-value = 4.80e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.81e-01

Only 100 of 306 total aligned reads displayed.

ACCGGTTGCAATGGAATATCAACAATAGCGGCACCTATACAAATAACGTCGAGATTATCCATATCATTATTCCGCTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCA‑CTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAAGCTAATTGCAGTTTTAATGTCGGCATCACTGATCCCGCTTGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCACTCGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAAACTATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATCGGTATAGTGATAGCCCGCCAGCGCTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAATCGACAGCCTCT  >  CP042583/1538923‑1539475
                                                                                                                                                                                                                                                                                     |||                                                                                                                                                                                                                                                                                  
         aaTGGAATATCAACAATAGCGGCACCTATACAAATAACGTCGAGATTATCCATATCATTATTCCGCTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCA‑CTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAg                                                                                                                                                                                                                                                                  <  1:1248053/288‑1 (MQ=255)
                            cGGCACCTATACAAATAACGTCGAGATTATCCATATCATTATTCCGCTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCA‑CTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATcgc                                                                                                                                                                                                                                              >  1:1955001/1‑289 (MQ=255)
                            cGGCACCTATACAAATAACGTCGAGATTATCCATATCATTATTCCGCTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCA‑CTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATcgc                                                                                                                                                                                                                                              >  2:820850/1‑289 (MQ=255)
                              gCACCTATACAAATAACGTCGAGATTATCCATATCATTATTCCGCTTTGCCATCAGAACCGAACAGTTTAATTTTTTACAATGCCCGTTCTTTTACAGCTTTACGTACCTCACGTTCGAAATGCAGGAAAGGGTGATCCTGGTTTTCTTTCA‑CTGCAACCATTGCGGCCTGACAGAGCCACGTATGAATGTTGATTTTCGCTATACCAAAAGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGAAAAACCAGCGGAACAGAAACGGAAGcgcga                                                                                                                                                                                                                                            >  2:876147/1‑288 (MQ=255)
                                 ccTATAACAATCACGTCGAGATTATCCATATCATTATTCCGCTTTGCCATCAGAACCGAACAGTTTAATTTTTTCAAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCA‑CTGCAACCATTGCGGCCTGAAAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTAcg                                                                                                                                                                                                                                         <  1:972516/289‑1 (MQ=255)
                                           tAACGTCGAGATTATCCATATCATTATTCCGCTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCA‑CTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTgaag                                                                                                                                                                                                                                >  1:1187016/1‑286 (MQ=255)
                                            aaCGTCGAGATTATCCATATCATTATTCCGCTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCA‑CTGCAACCATTGCGTCCTGACAGAGCCCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTgacga                                                                                                                                                                                                                               >  1:861166/1‑288 (MQ=255)
                                            aaCGTCGAGATTATCCATATCATTATTCCGCTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCA‑CTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAACCCAGCGGAACAGAAACGGCATCGCGTACGCGTTTgacga                                                                                                                                                                                                                               >  2:470597/1‑288 (MQ=255)
                                               gTCGAGATTATCCATATCATTATTCCGCTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCA‑CTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTgac                                                                                                                                                                                                                                 <  1:1407349/283‑1 (MQ=255)
                                               gTCGAGATTATCCATATCATTATTCCGCTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCA‑CTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTc                                                                                                                                                                                                                           >  1:1007462/1‑289 (MQ=255)
                                               gTCGAGATTATCCATATCATTATTCCGCTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCA‑CTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTc                                                                                                                                                                                                                           >  1:1534553/1‑289 (MQ=255)
                                                   agaTTATCCATATCATTATTCCGCTTTTCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGGTTTCTTTCA‑CTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCTGATGCACCGTGCAAAACAAGGGGAACAGAACCGGCATCGCGTCCGCGTTTGACGACCTCAAAg                                                                                                                                                                                                                       >  2:688902/1‑289 (MQ=255)
                                                         tCCATATCATTATTCCGCTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCA‑CTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAAt                                                                                                                                                                                                                 >  1:578023/1‑289 (MQ=255)
                                                         tCCATATCATTATTCCGCTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCA‑CTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAAt                                                                                                                                                                                                                 >  1:546307/1‑289 (MQ=255)
                                                              atCATTATTCCGCTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCA‑CTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGa                                                                                                                                                                                                                                                              >  1:2060662/1‑239 (MQ=255)
                                                                cATTATTCCGCTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCA‑CTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGaaa                                                                                                                                                                                                                                                       >  1:144794/1‑244 (MQ=255)
                                                                cATTATTCCGCTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCA‑CTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGaaa                                                                                                                                                                                                                                                       <  2:144794/244‑1 (MQ=255)
                                                                cATTATTCCGCTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCA‑CTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCt                                                                                                                                                                                                          <  2:349388/289‑1 (MQ=255)
                                                                  ttattCCGCTTTGCCAGCGTACCAGAACAGTTTAATTGTTACCATTGCCCGTTCTTTTACAGCTTTACGTACGTGACGTGCGAAAGGCAGGGAAGGCTGTTTCTGGTGGTCTTTCA‑CTGCGACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGAGTATCTCGATACCCAACGAAATTGCAGTGTTAATGTCGGCATCACTGATACCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATGGTGGCTct                                                                                                                                                                                                        <  2:222851/289‑2 (MQ=255)
                                                                   tattCCGCTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCA‑CTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGc                                                                                                                                                                                                           >  2:2241649/1‑285 (MQ=255)
                                                                   tattCCGCTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCA‑CTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTctg                                                                                                                                                                                                       >  1:1905616/1‑287 (MQ=255)
                                                                   tattCCGCTTTGACATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCA‑CTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCAAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCCTACGCGTTTGACGACCTAACAGTTCAATTGTGGCTcgg                                                                                                                                                                                                       >  2:694956/1‑287 (MQ=255)
                                                                    attCCGCTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCA‑CTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTctga                                                                                                                                                                                                      <  2:525310/289‑4 (MQ=255)
                                                                       ccGCTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCA‑CTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATtg                                                                                                                                                                                                               <  2:1631072/277‑1 (MQ=255)
                                                                        cGCTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCA‑CTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTctgacgta                                                                                                                                                                                                  >  2:240011/1‑282 (MQ=255)
                                                                          cTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCA‑CTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGccctgacgtata                                                                                                                                                                                                >  1:1113761/1‑278 (MQ=255)
                                                                          cTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCA‑CTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGtata                                                                                                                                                                                                <  2:1413665/289‑1 (MQ=255)
                                                                          cTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCA‑CTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGtata                                                                                                                                                                                                >  1:257053/1‑289 (MQ=255)
                                                                          cTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCA‑CTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTCCAAAACCAGCGGAACAGAAACGGCATCGCCTACGCGTTGGACGACCTCAAAGTTCAATTGTGGCCCTCACGtata                                                                                                                                                                                                >  2:1935582/1‑289 (MQ=255)
                                                                             tGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCA‑CTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCt                                                                                                                                                                                                          <  2:1384771/276‑1 (MQ=255)
                                                                             tGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCA‑CTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCt                                                                                                                                                                                                          >  1:1384771/1‑276 (MQ=255)
                                                                             tGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCA‑CTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTctg                                                                                                                                                                                                       <  1:621833/279‑3 (MQ=255)
                                                                             tGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCA‑CTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATaaa                                                                                                                                                                                              >  1:321089/1‑288 (MQ=255)
                                                                                           aaCAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCA‑CTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCt                                                                                                                                                                                                          >  2:508363/1‑262 (MQ=255)
                                                                                            aCAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCA‑CTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGcc                                                                                                                                                                              <  1:439365/289‑1 (MQ=255)
                                                                                                     ttttttCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCA‑CTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGAc                                                                                                                                                                     >  1:107817/1‑289 (MQ=255)
                                                                                                      tttttCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCA‑CTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACa                                                                                                                                                                    <  1:1571067/289‑1 (MQ=255)
                                                                                                            cAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCA‑CTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCaat                                                                                                                                                              <  2:626605/289‑2 (MQ=255)
                                                                                                                  ccGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCA‑CTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCaatgaatca                                                                                                                                                        <  1:353955/289‑8 (MQ=255)
                                                                                                                                cTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCA‑CTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGAc                                                                                                                                                                     >  1:460759/1‑262 (MQ=255)
                                                                                                                                cTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCA‑CTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTc                                                                                                                                          >  2:1131213/1‑289 (MQ=255)
                                                                                                                                          ttCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCA‑CTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTTATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGc                                                                                                                                                                  <  1:2178933/255‑1 (MQ=255)
                                                                                                                                          ttCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCA‑CTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTTATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGc                                                                                                                                                                  >  2:2178933/1‑255 (MQ=255)
                                                                                                                                               gTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCA‑CTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTCTAAAACCCATGCTGGTTGCCGATGGCGACCGCCAATGAATCACAGCCCGTACGTTCAACACAATCAgccc                                                                                                                            >  2:743972/1‑287 (MQ=255)
                                                                                                                                               cttCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCC‑CTGCAACCATTGCGGCCTGACCTAGCTCCGTATGAATGTTGACTTTCGCGCTACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCATTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTCCAACAAATTCAgccgc                                                                                                                           <  2:1467116/288‑1 (MQ=255)
                                                                                                                                                    aaaTGCAGGAAAGGCTGATCCTGGTTTTCTTTCA‑CTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGt                                                                                                                      <  2:574665/289‑1 (MQ=255)
                                                                                                                                                     aaTGCAGGAAAGGCTGATCCTGGTTTTCTTTCA‑CTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTc                                                                                                                     <  1:183630/289‑1 (MQ=255)
                                                                                                                                                         cAGGAAAGGCTGATCCTGGTTTTCTTTCA‑CTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTctgacgtat                                                                                                                                                                                                 >  1:1602599/1‑201 (MQ=255)
                                                                                                                                                         cAGGAAAGGCTGATCCTGGTTTTCTTTCA‑CTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTctgacgtat                                                                                                                                                                                                 <  2:1602599/209‑9 (MQ=255)
                                                                                                                                                          gggAAAGGCTGATCCTGGTTTTCTTACA‑CTGCAACCTTTGCGGCCTGAAAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGAt                                                                                                                <  2:800680/288‑1 (MQ=255)
                                                                                                                                                          aGGAAAGGCTGATCCTGGTTTTCTTTCA‑CTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGAt                                                                                                                <  2:87230/289‑1 (MQ=255)
                                                                                                                                                          aGGAAAGCCTGATCCT‑GTTTTTTTTCACCTGCAACCATTGCGGCCTGACAGGGCTCCGAATGAATGTT‑AATTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGAt                                                                                                                <  1:1699849/288‑1 (MQ=255)
                                                                                                                                                           ggAAAGTCAGAGCCTGGTTTTCTTTCA‑CTGCAACCATTGCGGCCTGACAGATCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGAt                                                                                                                <  2:2020829/288‑1 (MQ=255)
                                                                                                                                                           ggAAAGGCTGATCCTGGTTTTCTTTCA‑CTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAAcccc                                                                                                                                                                                          <  2:1910057/214‑1 (MQ=255)
                                                                                                                                                           ggAAAGGCTGATCCTGGTTTTCTTTCA‑CTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAgg                                                                                                                  >  2:90407/1‑286 (MQ=255)
                                                                                                                                                           ggAAAGGCTGATCCTGGGTTTCTTTCA‑CTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTGGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGTAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGAt                                                                                                                <  1:1871798/288‑1 (MQ=255)
                                                                                                                                                            gAAAGGCTGATCCTGGTATCCTTTCA‑CTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAACCCGTACGTTCAACAAATTCAGCCGCCTGGCCAGGAttg                                                                                                              >  1:1046152/1‑287 (MQ=255)
                                                                                                                                                             aaaaGCTGTTCCTGGTTTTCTTTCA‑CTGCAGCCATTGGGGCCGGACAGAGTTCCTTATTAATGTTGATTTTCGCGATACCCAACGAAAGTGCAGTTTTAATTTCGGCATCACTGATCCCCGATGAACCGTGCAAAACCAGCGTAACAGAAACGGCATCGCGTACGCGTGTGACGACCTCAAAGTTCAATTGTGGCGCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGAt                                                                                                                <  2:1046152/286‑1 (MQ=255)
                                                                                                                                                             aaaGGCTGATCCTGGTTTTCTTTCA‑CTGCAACCATTGCGGGCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGAt                                                                                                                <  1:2008557/286‑1 (MQ=255)
                                                                                                                                                             aaaGGCTGATCCTGGTTTTCTTTCA‑CTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGAt                                                                                                                <  1:2117089/286‑1 (MQ=255)
                                                                                                                                                             aaaGGCTGATCCTGGTTTTCTTTCA‑CTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGAt                                                                                                                <  1:90407/286‑1 (MQ=255)
                                                                                                                                                             aaaGGCTGATCCTGGTTTTCTTTCA‑CTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGAt                                                                                                                <  1:518890/286‑1 (MQ=255)
                                                                                                                                                             aaaGGCTGATCCTGGTTTTCTTTCA‑CTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGAt                                                                                                                <  1:686259/286‑1 (MQ=255)
                                                                                                                                                               aGGCTGATCCTGGTTTTCTTTCA‑CTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATCGGta                                                                                                           <  1:240011/289‑1 (MQ=255)
                                                                                                                                                                 gCTGATCCTGGTTTTCTTTCA‑CTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAgccgcc                                                                                                                          >  2:1264001/1‑272 (MQ=255)
                                                                                                                                                                 gCTGATCCTGGTTTTCTTTCA‑CTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGCGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGGTCAACAAATTCAGCCGCCTGGTCAGGATCGGtat                                                                                                          >  1:1320106/1‑288 (MQ=255)
                                                                                                                                                                        cTGGTTTTCTTTCA‑CTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGTTGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATCGGTATAGTGATAg                                                                                                  <  2:399304/289‑1 (MQ=255)
                                                                                                                                                                                    cA‑CTGCAACCATTCAGGCCTGAAAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCAGCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATCGGTATAGTGATAGCCCGCCAGCGCt                                                                                      <  2:2133516/289‑1 (MQ=255)
                                                                                                                                                                                     cactggcacccgtGCGGCCTTGAAGAGCTCCGTAAGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCAACGTGCAAAACCCACGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTTAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCCCAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATCGGTATAGTGATAGCCCGCCAGCGCt                                                                                      <  2:1816626/277‑1 (MQ=255)
                                                                                                                                                                                          cAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCTTGGTCAGGATCGGTATAGTGATAGCCCGCCAGCGCGTCCTc                                                                                 >  2:728975/1‑289 (MQ=255)
                                                                                                                                                                                           aaCCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATCGGTATAGTGATAGCCCGCCAGCGCTTCCTCa                                                                                <  2:1007462/289‑1 (MQ=255)
                                                                                                                                                                                                ttGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATCGGTATAGTGATAGCCCGCCAGCGCTTCCTCATAAAc                                                                           <  1:743972/289‑1 (MQ=255)
                                                                                                                                                                                                     gCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGACATTGCAGTGTTAATGTCGGCATCACTGATCCGCGATGCACCGTGCAAAACTAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCACAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATCGGTATAGTGATAGCCCGCCAGCGCTTCCTCATAAACGGtt                                                                       >  2:210433/1‑288 (MQ=255)
                                                                                                                                                                                                        tGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGa                                                                                                                 <  1:791585/243‑1 (MQ=255)
                                                                                                                                                                                                        tGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGAAAGCCAATGAATCCCAGCCCGTACGTTCAAAAAATTCAGCCGCCTGGTCAGGATCGTTATAGTAATAGCCCGCCCGCGCCTCCCCATAAACGGATTAAt                                                                   >  2:1707260/1‑289 (MQ=255)
                                                                                                                                                                                                         gACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAAc                                                                                                                                                                                                                                                            <  2:2035254/103‑1 (MQ=255)
                                                                                                                                                                                                              agCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGAt                                                                                                                >  1:2143358/1‑238 (MQ=255)
                                                                                                                                                                                                               gCTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATCGGTATAGTGATAGCCCGCCAGCGCTTCCTCATAAACGGTTTCATTa                                                                 <  1:763037/284‑1 (MQ=255)
                                                                                                                                                                                                                cTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATTCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATCGGTAAAGTTAGAGCCCGCCAGCTCTTCCTCCACAACCGTTTCATTaacta                                                             >  2:1491778/1‑283 (MQ=255)
                                                                                                                                                                                                                cTCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTCTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATCGGTATAGTGATAGCCCGCCAGCGCTTCCTCATAAACGGTTTCATTACCGACa                                                           >  1:1801607/1‑289 (MQ=255)
                                                                                                                                                                                                                 tCCGTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATCGGTATAGTGATAGCCCGCCAGCGCTTCCTCATAAACGGTTTCATTACCGACa                                                           <  1:814551/288‑1 (MQ=255)
                                                                                                                                                                                                                 tCCGTATGAATGTTGATTATCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATCGGTATAGTGATAGCCCGCCAGCGCTTCCTCATAAACGGTTTCATTACCGACa                                                           <  1:1485955/288‑1 (MQ=255)
                                                                                                                                                                                                                    gTATGAATGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATcgcg                                                                                                                                                                                                                                             <  1:693462/107‑1 (MQ=255)
                                                                                                                                                                                                                          aTGTTGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATCGGTATAGTGATAGCCCGCCAGCGCTTCCTCATAAACGGTTTCATTACCGACATGCCCTAAt                                                  >  1:470737/1‑288 (MQ=255)
                                                                                                                                                                                                                             ttGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATCGGTATAGTGATAGCCCGCCAGCGCTTCCTCATaaa                                                                            <  2:2063765/259‑1 (MQ=255)
                                                                                                                                                                                                                             ttGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATCGGTATAGTGATAGCCCGCCAACGCTTCCTCATAAACTGTTTCCTTACCGACATGCCCTAATAcc                                               >  2:1586720/1‑288 (MQ=255)
                                                                                                                                                                                                                             ttGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATCGGGATAGTGATAGCCCGCCAGCGCTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTct                                               >  1:30393/1‑287 (MQ=255)
                                                                                                                                                                                                                              tGATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATCGGTATAGTGATAGCCCGCCAGCGCTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGc                                             <  1:2239138/289‑1 (MQ=255)
                                                                                                                                                                                                                               gATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTc                                                                                                                     <  1:202467/216‑1 (MQ=255)
                                                                                                                                                                                                                               gATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATCGGTATAGTGATAGCCCGCCAGCGCTTCCTCATAAACGGTTTCATTACCGa                                                             <  2:1996981/272‑1 (MQ=255)
                                                                                                                                                                                                                               gATTTTCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATCGGTATAGTGATAGCCCGCCAGCGCTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGc                                             >  2:1530663/1‑288 (MQ=255)
                                                                                                                                                                                                                                 ttttCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATCGGTATAGTGATAGCCCGCCAGCGCTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCctc                                          <  1:71418/289‑1 (MQ=255)
                                                                                                                                                                                                                                  tttCGCGATACCCAACGAAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATCGGTATAGTGATAGCCCGCCAGCGCTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCctc                                          >  2:452161/1‑288 (MQ=255)
                                                                                                                                                                                                                                               aacgaaaTTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATCGGTATAGTGATAGCCCGCCAGCGCTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCa                            <  2:546307/284‑1 (MQ=255)
                                                                                                                                                                                                                                                    aaTTGCAGTTTTAATGCCGGAATCACTTGTCCCCGAGGCCCCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTGTAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATCGGTATAGTGATAGCCCGCCAGCGCTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGa                       <  2:287502/289‑1 (MQ=255)
                                                                                                                                                                                                                                                       tGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGAt                                                                                                                <  2:1898964/197‑1 (MQ=255)
                                                                                                                                                                                                                                                                   gTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACGGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATCGGTATAGTGATAGCCCGCCAGCGCTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAATCGACa        <  2:77048/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                   gTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATCGGTATAGTGATAGCCCGCCAGCGCTTCCTCATACACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAATCGACa        <  1:876147/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                      ggCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCt                                                                                                                                                                                                          <  1:1454100/92‑1 (MQ=255)
                                                                                                                                                                                                                                                                         aTCACTTATCCCCGATGCACCGTGCAAAACCATCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGTCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATCGGTATAGTGATAGCCCGCCAGCGCTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAATCGACAGCctct  <  1:1924028/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                                     |||                                                                                                                                                                                                                                                                                  
ACCGGTTGCAATGGAATATCAACAATAGCGGCACCTATACAAATAACGTCGAGATTATCCATATCATTATTCCGCTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCA‑CTGCAACCATTGCGGCCTGACAGAGCTCCGTATGAATGTTGATTTTCGCGATACCCAAGCTAATTGCAGTTTTAATGTCGGCATCACTGATCCCGCTTGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCACTCGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAAACTATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATCGGTATAGTGATAGCCCGCCAGCGCTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAATCGACAGCCTCT  >  CP042583/1538923‑1539475

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A