Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 4926 296.4 4517418 96.8% 4372860 264.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,608,926 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,608,9260GC99.6% 631.9 / NA 270intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/0);  major base C (154/115);  minor base T (1/0);  total (155/115)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01
*CP0425831,608,9270CG100.0% 640.0 / NA 270intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base G (155/115);  total (155/115)
*CP0425831,608,9280TA99.6% 630.5 / NA 270intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (1/0);  new base A (153/114);  total (155/115)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01

Only 100 of 270 total aligned reads displayed.

GTTGCTCATCACGCATACGGGTACGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTGCTGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGGCTTGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATGCCGTACTGGCGTCGGGAAAGAAAATCTTCTGCCAGCGCCATAATGGTGTTATCGGGCGTAATCGCCATTCCGCCCATGCTATAAAACTCACTATGAGCTGCGCG  >  CP042583/1608646‑1609201
                                                                                                                                                                                                                                                                                        |||                                                                                                                                                                                                                                                                                 
gTTGCTCATCACGCATACGGGTACGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTACGCGTACAGCAGGCGCACTTCACTGGTGGTGGCGCTTGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTATTTTTCTTCGTAGATCAGTTTATATTGCGTTGCTg                                                                                                                                                                                                                                                                              >  1:1434053/1‑288 (MQ=255)
   gCTCATCACGCATACGGGTACGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTGTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGt                                                                                                                                                                                                                                                                          >  1:911696/1‑289 (MQ=255)
           cGCATACGGGTACGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATg                                                                                                                                                                                                                                                                   >  2:1218599/1‑288 (MQ=255)
                    gTACGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGc                                                                                                                                                                                                                                                          <  1:278225/288‑1 (MQ=255)
                      agggTATAAGCCAAAGTTTTTGTCGTGGGGGTTGGAATGCAGATAGAAACGAGGCTGGTAGTGTTCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCa                                                                                                                                                                                                                                                        <  2:2042099/286‑1 (MQ=255)
                      aCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCa                                                                                                                                                                                                                                                        <  1:1218599/288‑1 (MQ=255)
                      aCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAg                                                                                                                                                                                                                                                       >  2:1101243/1‑289 (MQ=255)
                       cGGTATATGCCAAAGTTTTTGGCGTGGCGGTCGGAACCACAATAAAACCGATGCGGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGa                                                                                                                                                                                                                                                      <  2:553667/289‑1 (MQ=255)
                       cGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGACCCCAGATAAAAACGATGCTGGTAGTGATAAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGa                                                                                                                                                                                                                                                      <  1:2218446/289‑1 (MQ=255)
                       cGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGa                                                                                                                                                                                                                                                      <  2:991342/289‑1 (MQ=255)
                              aGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTATATCAGTTTATCTTGCGAGGCTGGCGTTCCGATGGCGTGACGCCAAGCCGGATa                                                                                                                                                                                                                                               >  2:1178418/1‑289 (MQ=255)
                                  aaaGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGgc                                                                                                                                                                                                                                           >  1:2150668/1‑289 (MQ=255)
                                    aGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCg                                                                                                                                                                                                                                                                <  1:585510/266‑1 (MQ=255)
                                    aGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGgca                                                                                                                                                                                                                                          >  2:88119/1‑288 (MQ=255)
                                    aGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGgca                                                                                                                                                                                                                                          >  1:592526/1‑288 (MQ=255)
                                    aGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGgca                                                                                                                                                                                                                                          >  1:1913509/1‑288 (MQ=255)
                                    aGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGgca                                                                                                                                                                                                                                          >  1:1660359/1‑288 (MQ=255)
                                    aGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGgca                                                                                                                                                                                                                                          >  1:1746438/1‑288 (MQ=255)
                                    aGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTCCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGgca                                                                                                                                                                                                                                          >  1:1002502/1‑288 (MQ=255)
                                                  cGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGa                                                                                                                                                                                                                            <  1:871409/288‑1 (MQ=255)
                                                           cGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACGAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGa                                                                                                                                                                                                                   <  2:1696755/288‑1 (MQ=255)
                                                                          tGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGa                                                                                                                                                                                                                                                      <  1:1859663/238‑1 (MQ=255)
                                                                                     aTCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCAGCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCAAAATGAATGACTACATAGTGCTTCGAGGTCGGTTTATGCAGGCTGACGTATGAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACACACTAGAAAATCCAGTAGTCAttt                                                                                                                                                                                        >  2:654406/1‑289 (MQ=255)
                                                                                      tCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCAttt                                                                                                                                                                                        >  2:2236632/1‑288 (MQ=255)
                                                                                         aGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGccc                                                                                                                                                                                    <  1:1116737/289‑1 (MQ=255)
                                                                                               tgttCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCCAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTAAATAGTGCTTCGAGGTCGTTTTATGACGGCGGACGTAATAGGTATAGTCTTTTTCTTCGTAAAGCAGTTTATCTTGCGATGCTGGCGTCCCGAATGCGTGTCGCCAGACCTGAGAAGTCAGCAGGGCCCCCGCATGTTTGTGAACACATGAGAAACTCAAGGAGTCATTTGCCCCGACaa                                                                                                                                                                              >  2:1410270/3‑289 (MQ=255)
                                                                                               tATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACaa                                                                                                                                                                              >  1:2048031/1‑289 (MQ=255)
                                                                                               tATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACaa                                                                                                                                                                              >  1:1506928/1‑289 (MQ=255)
                                                                                               tATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACaa                                                                                                                                                                              >  2:1375093/1‑289 (MQ=255)
                                                                                                 ttCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGa                                                                                                                                                                                                                            <  2:1856176/241‑1 (MQ=255)
                                                                                                   cGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCt                                                                                                                                                                          <  1:1338726/289‑1 (MQ=255)
                                                                                                    gTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGGGGCGCTGGCCAAAGGAGTGACTACAGAGTGCGTCGAGGTCGTTTTATGCAGGCTGACGCAATAGGTATCGTCTGTTTCTTCGTAGAGCAGGTTATCTTGCGCAGCTGGCGTACCGATGGCTTGACGCCGGACCTGACACGATGGCAGCGTCACCGGATGATGGGGCACACGTGCGAAAATGCGGGAGTCCTTGGCCCAGACACAGCta                                                                                                                                                                         >  2:1785572/1‑288 (MQ=255)
                                                                                                      gATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTggg                                                                                                                                                                       >  1:370206/1‑289 (MQ=255)
                                                                                                         cTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCAAGGAGTCATTTGCCCAGACAAAGCTGGGTTc                                                                                                                                                                    >  2:2315/1‑289 (MQ=255)
                                                                                                            tGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAAc                                                                                                                                                                 >  1:1792290/1‑289 (MQ=255)
                                                                                                              cggcgcggcAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACg                                                                                                                                                                <  2:1129714/288‑1 (MQ=255)
                                                                                                                 cgcggcAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTa                                                                                                                                                             <  2:433367/288‑1 (MQ=255)
                                                                                                                      cAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCcag                                                                                                                                                        <  2:519827/288‑1 (MQ=255)
                                                                                                                      cAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATACAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCcag                                                                                                                                                        <  1:401773/288‑1 (MQ=255)
                                                                                                                                 acGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGta                                                                                                                                            <  1:2038173/289‑1 (MQ=255)
                                                                                                                                           aTCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGtaccagttacc                                                                                                                                   <  1:1013816/288‑1 (MQ=255)
                                                                                                                                                    ttCCGCGTCCAGCAGGCTAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCg                                                                                                                                                                                                                                                                >  1:1206579/1‑154 (MQ=255)
                                                                                                                                                              agcagGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAAc                                                                                                               >  1:1850868/1‑289 (MQ=255)
                                                                                                                                                               gcagGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCCTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACg                                                                                                              >  2:44742/1‑289 (MQ=255)
                                                                                                                                                                    cGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATg                                                                                                          <  1:2315/288‑1 (MQ=255)
                                                                                                                                                                        cTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGtaccagttac                                                                                                                                    >  2:727871/1‑258 (MQ=255)
                                                                                                                                                                        cTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGtaccagttac                                                                                                                                    <  1:727871/258‑1 (MQ=255)
                                                                                                                                                                                     ggCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATg                                                                                                          >  2:1973165/1‑271 (MQ=255)
                                                                                                                                                                                     ggCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATGCCGTACTGGCGTCGGgaa                                                                                        >  2:1676930/1‑289 (MQ=255)
                                                                                                                                                                                          tGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGtaccagttac                                                                                                                                    >  1:532764/1‑240 (MQ=255)
                                                                                                                                                                                           ggCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGaa                                                                                                            >  2:1007402/1‑263 (MQ=255)
                                                                                                                                                                                                     ttgaCTACATAGTGTTTCTAGGGCGGTTTAGGCAGGATGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATGCCGTACTGGCGTCGGGAAAGAAAATCTTCTGcc                                                                         <  2:1913509/287‑1 (MQ=255)
                                                                                                                                                                                                      tgaCTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATGCCGTACTGGCGTCGGGAAAGAAAATCTTCTGCCAg                                                                       <  2:1459393/289‑1 (MQ=255)
                                                                                                                                                                                                      tgaCTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTCGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATGCCGTACTGGCGTCGGGAAAGAAAATCTTCTGCCAg                                                                       <  1:980001/289‑1 (MQ=255)
                                                                                                                                                                                                           aCATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATGCCGTACTGGCGTCGGGAAAGAAAATCTTCTGCCAGCGCCa                                                                  >  2:858912/1‑289 (MQ=255)
                                                                                                                                                                                                            cATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCt                                                                                                                                                                          >  1:1131275/1‑184 (MQ=255)
                                                                                                                                                                                                               aGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATGCCGTACTGGCGTCGGGAAAGAAAATCTTCTGCCAGCGCCATAAt                                                              >  1:1283752/1‑289 (MQ=255)
                                                                                                                                                                                                                 tgtgtcgaggTCGGTTTAGGCAGTCTGACTTAATACGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGGTGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGTTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATGCCGTACTGGCGTCGGGAAAGAAAATCTTCTGCCAGCGCCATAATg                                                             <  2:114031/280‑1 (MQ=255)
                                                                                                                                                                                                                 tgcttcgaggTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCcagca                                                                                                                                                      <  2:389820/191‑1 (MQ=255)
                                                                                                                                                                                                                 tgcttcgaggTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGCTTACGAAAACGAATGCCGTACTGGCGTCGGGAAAGAAAATCTTCTGCCAGCGCCATAATgg                                                            >  1:2159021/9‑289 (MQ=255)
                                                                                                                                                                                                                 tgcttcgaggTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATGCCGTACTGGCGTCGGGAAAGAAAATCTTCTGCCAGCGCGATAATgg                                                            >  1:442436/9‑289 (MQ=255)
                                                                                                                                                                                                                 tgcttcgaggTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATGCCGTACTGGCGTCGGGAAAGAAAATCTTCTGCCAGCGCCATAATgg                                                            >  1:79831/9‑289 (MQ=255)
                                                                                                                                                                                                                 tgcttcgaggTCGTTTTATGCAGGCCGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATg                                                                                                          >  1:1567074/9‑243 (MQ=255)
                                                                                                                                                                                                                   gttcgaggTCGGTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATGCCGTACTGGCGTCGGGAAAGAAAATCTTCTGCCAgcg                                                                     >  1:335532/7‑278 (MQ=255)
                                                                                                                                                                                                                   cttcggtgTCGTTTTATGCGTGCTGACGTACTAGTTGTCGTCTTTTTCTGCGGAAATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGGGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATGCCGTACTGGCGTCGGGAAAGAAAATCTTCTGCCAGCGCCATAATGgtg                                                          <  2:2078539/282‑1 (MQ=255)
                                                                                                                                                                                                                   cttcgaggTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCa                                                                                                                                                                                           <  1:255839/154‑1 (MQ=255)
                                                                                                                                                                                                                   cttcgaggTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATGCCGTACTGGCGTCGGGAAAGAAAATCTTCTGCCAgcg                                                                     <  2:335532/272‑1 (MQ=255)
                                                                                                                                                                                                                   cttcgaggTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATGCCGTACTGGCGTCGGGAAAGAAAATCTTCTGCCAGCGCCATAATg                                                             >  2:152524/7‑286 (MQ=255)
                                                                                                                                                                                                                   cttcgaggTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATGCCGTACTGGCGTCGGGAAAGAAAATCTTCTGCCAGCGCCATAATg                                                             <  1:152524/280‑1 (MQ=255)
                                                                                                                                                                                                                   cttcgaggTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATGCCGTACTGGCGTCGGGAAAGAAAATCTTCTGCCAGCGCCATAATGgtg                                                          >  1:505309/7‑289 (MQ=255)
                                                                                                                                                                                                                   cttcgaggTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATGCCGTACTGGCGTCGGGAAAGAAAATCTTCTGCCAGCGCCATAATGgtg                                                          >  1:1622553/7‑289 (MQ=255)
                                                                                                                                                                                                                    ttcgaggTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGGTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATGCCGTACTGGCGTGGGGAAAGAAAATCTTCTGCCGCCGCCATATTGgtgt                                                         >  2:1507361/6‑289 (MQ=255)
                                                                                                                                                                                                                      cgaggTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGtaccagttacc                                                                                                                                   <  1:787160/210‑1 (MQ=255)
                                                                                                                                                                                                                      cgaggTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGtaccagttacc                                                                                                                                   >  2:787160/4‑213 (MQ=255)
                                                                                                                                                                                                                      cgaggTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATGCCGTACTGGCGTCGGGAAAGAAAATCTTCTGcc                                                                         >  1:447993/4‑271 (MQ=255)
                                                                                                                                                                                                                      cgaggTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATGCCGTACTGGCGTCGGGAAAGAAAATCTTCTGCCAGCGCCATAATGgttgta                                                       >  1:2078539/4‑285 (MQ=255)
                                                                                                                                                                                                                      cgaggTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATGCCGTACTGGCGTCGGGAAAGAAAATCTTCTGCCAGCGCCATAATGgt                                                           <  2:1843404/282‑1 (MQ=255)
                                                                                                                                                                                                                      cgaggTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATGCCGTACTGGCGTCGGGAAAGAAAATCTTCTGCCAGCGCCATAATGGTGTTa                                                       >  2:952559/4‑289 (MQ=255)
                                                                                                                                                                                                                      cgaggTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATGCCGTACTGGCGTCGGGAAAGAAAATCTTCTGCCAGCGCCATAATGGTGTTa                                                       >  2:683370/4‑289 (MQ=255)
                                                                                                                                                                                                                      cgaggTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTAATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATGCCGTACTGGCGTCGGGAAAGAAAATCTTCTGCCAg                                                                       <  2:262821/270‑1 (MQ=255)
                                                                                                                                                                                                                        aggTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATGCCGTACTGGCGTCGGGAAAGAAAATCTTCTGCCAGCGCCATAATGGTGTTAt                                                      <  1:654406/287‑1 (MQ=255)
                                                                                                                                                                                                                           tCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATGCCGTACTGGCGTCGGGAAAGAAAATCTTCTGCCAg                                                                       <  2:1164966/268‑1 (MQ=255)
                                                                                                                                                                                                                           tCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATGCCGTACTGGCGTCGGGAAAGAAAATCTTCTGCCAg                                                                       >  1:1164966/1‑268 (MQ=255)
                                                                                                                                                                                                                           tCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATGCCGTACTGGCGTCGGGAAAGAAAATCTTCTGCCAGCGCCATAATGGTGTTATCggg                                                  >  2:311582/1‑289 (MQ=255)
                                                                                                                                                                                                                           tCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATGCCGTACTGGCGTCGGGAAAGAAAATCTTCTGCCAGCGCCATAATGGTGTTATCgg                                                   >  1:573417/1‑288 (MQ=255)
                                                                                                                                                                                                                                   tGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATGCCGTACTGGCGTCGGGAAAGAAAATCTTCTGCCAgcgc                                                                    <  1:1047582/263‑1 (MQ=255)
                                                                                                                                                                                                                                   tGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATGCCGTACTGGCGTCGGGAAAGAAAATCTTCTGCCAgcgc                                                                    >  2:1576115/1‑263 (MQ=255)
                                                                                                                                                                                                                                   tGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATGCCGTACTGGCGTCGGGAAAGAAAATCTTCTGCCAgcgc                                                                    >  2:1047582/1‑263 (MQ=255)
                                                                                                                                                                                                                                                aaTAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATGCCGTACTGGCGTCGGGAAAGAAAATCTTCTGCCAGCGCCATAATGGTGTTATCGGGCGTAATCGCCATTCCGCCCa                              <  2:2157747/288‑1 (MQ=255)
                                                                                                                                                                                                                                                  tAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATGCCGTACTGGCGTCGGGAAAGAAAATCTTCTGCCAgcg                                                                     <  1:9956/247‑1 (MQ=255)
                                                                                                                                                                                                                                                  tAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATGCCGTACTGGCGTCGGGAAAGAAAATCTTCTGCCAGCGCCATAATGGTGTTAt                                                      <  1:611574/262‑1 (MQ=255)
                                                                                                                                                                                                                                                      tATCGTCTTTTTCTTCGTAGATCATTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATGCCGTACTGGCGTCGGGAAAGAAAATCTTCTGCCAGCGCCATAATGGTGTTATCGGGCGTAATCGCCATTCCGCCCAtctaata                       >  1:1254111/1‑283 (MQ=255)
                                                                                                                                                                                                                                                       aTCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAACAGCGTCACCGGATGCTTGCGAACATAGTAGAAAAGCCAGGAGTGATTTGCCCAGACAAAGCTTGGTTGAACGTGATCCAGCAGTTCCGTGTACCAGTGACCAGTTTCCAGATTAGGAAAACGAATGCCGGACTGGAATCGCGAATGAAATTCTTCTGCCATCGCCATAATGGTGTTATCGAGCGTAAGCGCCATTCCCCCCATGcaaaaa                      >  2:1016651/1‑284 (MQ=255)
                                                                                                                                                                                                                                                        tCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATGCCGTACTGGCGTCGGGAAAGAAAATCTTCTGCCAgcg                                                                     >  2:1271067/1‑241 (MQ=255)
                                                                                                                                                                                                                                                          gTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCATGAGTCATTTGCCCAGACAAAGCTTGTTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATGCCGTACTGGCGTCGGGAAAGAAAATCTTCTGCCAGCGCCATAATGGTGTTATCGGGCGTAATCGCCATTCCGCCCATCGAATAAAAc                   <  2:592526/289‑1 (MQ=255)
                                                                                                                                                                                                                                                          gTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATGCCGTACTGGCGTCGGGAAAGAAAATCTTCTGCCAGCGCCATAATGGTGTTATCGGGCGTAATCGCCATTCCGCCCATCGAATAAAAc                   <  2:1622553/289‑1 (MQ=255)
                                                                                                                                                                                                                                                            cTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATGCCGTACTGGCGTCGGGAAAGAAAATCTTCTGCCAGCGCCATAATGGTGTTATCGGGCGTAATCGCCATTCCGCCCATCGAATAAAACTc                 <  1:1396146/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                        aGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATGCCGTACTGGCGTCGGGAAAGAAAATCTTCTGCCAGCGCCATAATGGTGTTATCGGGCGTAATCGCCATTCCGCCCATCGAATAAAACTCACTATGAGCTgc     <  1:311582/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                        aGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATGCCGTACTGGCGTCGGGAAAGAAAATCTTCTGCCAGCGCCATAATGGTGTTATCGGGCGTAATCGCCATTCCGCCCATCGAATAAAACTCACTATGAGCTg      <  2:573417/288‑1 (MQ=255)
                                                                                                                                                                                                                                                                           tCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATGCCGTACTGGCGTCGGGAAAGAAAATCTTCTGCCAGCGCCATAATGGTGTTATCGGGCGTAATCGCCATTCCGCCCATCGAATAAAACTCACTATGAGCTgcgcg  <  2:129637/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                                        |||                                                                                                                                                                                                                                                                                 
GTTGCTCATCACGCATACGGGTACGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTGCTGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGGCTTGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATGCCGTACTGGCGTCGGGAAAGAAAATCTTCTGCCAGCGCCATAATGGTGTTATCGGGCGTAATCGCCATTCCGCCCATGCTATAAAACTCACTATGAGCTGCGCG  >  CP042583/1608646‑1609201

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A