Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F210 I1 R1 4928 385.2 6658600 97.5% 6492135 231.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,510,314 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,510,3140GC99.6% 554.5 / NA 235intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (1/0);  new base C (113/121);  total (114/121)
Fisher's exact test for biased strand distribution p-value = 4.85e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,510,3150CG99.2% 546.1 / NA 235intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (1/1);  new base G (112/120);  total (114/121)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,510,3160TA99.2% 553.7 / NA 235intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base A (112/120);  minor base G (1/1);  total (114/121)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 235 total aligned reads displayed.

ATAAACGGACGCTCGTGCGGCGGGATCACGGCCTGGGGGAATCCCGCATCGGCAAGGGCTTTCATTTTCAGTAAGCCCTGCTTCGCCGCCAGTCGCGGGTTAGACACCTGAAAACGGTGACGGGTAGAGGCTTCATTACCAAAGCTCAGGCCCGCGTAATGATGCGTCAGCCCTACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAAGCTGTCGCTCTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGAATGGCGCGGTACTGGCAGCACCGGTAAGCGGTTTGTTCCAGTTAACAATCCCCGCCCGCGCCTCCAGCAACAGTTGATCGAACTTTTCCCGCTCGGGGGAAACCAGACCGCAAGAGAGTCCGAAGCGAGTGTTATTCGCCATTCGAATCGCTTCATCGAAAGTATCATAACGCCAGACGCG  >  CP042583/1510043‑1510583
                                                                                                                                                                                                                                                                                |||                                                                                                                                                                                                                                                                           
aTAAACGGACGCTCGTGCGGCGGGATCACGGCCTGGGGGAATCCCGCATCGGCAAGGGCTTTCATTTTCAGTAAGCCCTGCTTCGCCGCCAGTCGCGGGTTAGACACCTGAAAACGGTGACGGGTAGAGGCTTCATTACCAAACGACAGGCCCGCGTAATGATGCGTCAGCCCTACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCAt                                                                                                                                                                                                                                                              <  1:2174391/289‑1 (MQ=255)
     cGGACGCTCGTGCGGCGGGATCACGGCCTGGGGGAATCCCGCATCGGCAAGGGCTTTCATTTTCAGTAAGCCCTGCTTCGCCGCCAGTCGCGGGTTAGACACCTGAAAACGGTGACGGGTAGAGGCTTCATTACCAAACGACAGGCCCGCGTAATGATGCGTCAGCCCTACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGcc                                                                                                                                                                                                                                                         <  1:2456595/289‑1 (MQ=255)
        aCGCTCGTGCGGCGGGATCACGGCCTGGGGGAATCCCGCATCGGCAAGGGCTTTCATTTTCAGTAAGCCCTGCTTCGCCGCCAGTCGCGGGTTAGACACCTGAAAACGGTGACGGGTAGAGGCTTCATTACCAAACGACAGGCCCGCGTAATGATGCGTCAGCCCTACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCCTCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGGTAAGCGTGGCGGGCAAGGTTAACGAGTCCGCCCCCAGGCTCGCCCTCGGCCAt                                                                                                                                                                                                                                                       >  2:3234475/1‑288 (MQ=255)
        aCGCTCGTGCGGCGGGATCACGGCCTGGGGGAATCCCGCATCGGCAAGGGCTTTCATTTTCAGTAAGCCCTGCTTCGCCGCCAGTCGCGGGTTAGACACCTGAAAACGGTGACGGGTAGAGGCTTCATTACCAAACGACAGGCCCGCGTAATGATGCGTCAGCCCTACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCAt                                                                                                                                                                                                                                                       <  1:3189508/288‑1 (MQ=255)
         cGCTCGTGCGGCGGGATCACGGCCTGGGGGAATCCCGCATCGGCAAGGGCTTTCATTTTCAGTAAGCCCTGCTTCGCCGCCAGTCGCGGGTTAGACACCTGAAAACGGTGACGGGTAGAGGCTTCATTACCAAACGACAGGCCCGCGTAATGATGCGTCAGCCCTACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATg                                                                                                                                                                                                                                                      <  2:1184907/288‑1 (MQ=255)
          gCTCGTGCGGCGGGATCACGGCCTGGGGGAATCCCGCATCGGCAAGGGCTTTCATTTTCAGTAAGCCCTGCTTCGCCGCCAGTCGCGGGTTAGACACCTGAAAACGGTGACGGGTAGAGGCTTCATTACCAAACGACAGGCCCGCGTAATGATGCGTCAGCCCTACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATgcg                                                                                                                                                                                                                                                    <  1:124555/289‑1 (MQ=255)
                      ggATCACGGCCTGGGGGAATCCCGCATCGGCAAGGGCTTTCATTTTCAGTAAGCCCTGCTTCGCCGCCAGTCGCGGGTTAGACACCTGAAAACGGTGACGGGTAGAGGCTTCATTACCAAACGACAGGCCCGCGTAATGATGCGTCAGCCCTACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCg                                                                                                                                                                                                                                        >  1:149946/1‑289 (MQ=255)
                      ggATCACGGCCTGGGGGAATCCCGCATCGGCAAGGGCTTTCATTTTCAGTAAGCCCTGCTTCGCCGCCAGTCGCGGGTTAGACACCTGAAAACGGTGACGGGTAGAGGCTTCATTACCAAACGACAGGCCCGCGTAATGATGCGTCAGCCCTACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCCCATCGGAAAGACCCAGCCC‑GGGGTTAAGCGTGGCGGGCAAAGGTAACGAGGCCGACTCCCGGCTCCGCATCGGCCCTGCCCACGAATCTGCg                                                                                                                                                                                                                                        >  2:2530885/1‑289 (MQ=255)
                             ggCCTGGGGGAATCCCGCATCGGCAAGGGCTTTCATTTTCAGTAAGCCCTGCTTCGCCGCCAGTCGCGGGTTAGACACCTGAAAACGGTGACGGGTAGAGGCTTCATTACCAAACGACAGGCCCGCGTAATGATGCGTCAGCCCTACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATAcc                                                                                                                                                                                                                                 <  1:486939/289‑1 (MQ=255)
                                  gggggAATCCCGCATCGGCAAGGGCTTTCATTTTCAGTAAGCCCTGCTTCGCCGCCAGTCGCGGGTTAGACACCTGAAAACGGTGACGGGTAGAGGCTTCATTACCAAACGACAGGCCCGCGTAATGATGCGTCAGCCCTACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATTTGCGGCATACCAGgc                                                                                                                                                                                                                             >  1:1694551/1‑288 (MQ=255)
                                   ggggAATCCCGCATCGGCAAGGGCTTTCATTTTCAGTAAGCCCTGCTTCGCCGCCAGTCGCGGGTTAGACACCTGAAAACGGTGACGGGTAGAGGCTTCATTACCAAACGACAGGCCCGCGTAATGATGCGTCAGCCCTACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCa                                                                                                                                                                                                                                                  >  2:1324852/1‑266 (MQ=255)
                                   ggggAATCCCGCATCGGCAAGGGCTTTCATTTTCAGTAAGCCCTGCTTCGCCGCCAGTCGCGGGTTAGACACCTGAAAACGGTGACGGGTAGAGGCTTCATTACCAAACGACAGGCCCGCGTAATGATGCGTCAGCCCTACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCa                                                                                                                                                                                                                                                  <  1:1324852/266‑1 (MQ=255)
                                   ggggAATCCCGCATCGGCAAGGGCTTTCATTTTCAGTAAGCCCTGCTTCGCCGCCAGTCGCGGGTTAGACACCTGAAAACGGTGACGGGTAGAGGCTTCATTACCAAACGACAGGCCCGCGTAATGATGCGTCAGCCCTACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGAGGGCAATGTTAACGAATCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGgcg                                                                                                                                                                                                                            >  1:1953298/1‑288 (MQ=255)
                                        aTCCCGCATCGGCAAGGGCTTTCATTTTCAGTAAGCCCTGCTTCGCCGCCAGTCGCGGGTTAGACACCTGAAAACGGTGACGGGTAGAGGCTTCATTACCAAACGACAGGCCCGCGTAATGATGCGTCAGCCCTACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCCCCCCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGTGCAATGTTAACGAGTCCGACTCCAGGCCCGCCATCGGCCATGCGCAGTAATCGTCGGCAGCCCCGGCCGTgggg                                                                                                                                                                                                                      >  2:1433005/1‑289 (MQ=255)
                                         tCCCGCATCGGCAAGGGCTTTCATTTTCAGTAAGCCCTGCTTCGCCGCCAGTCGCGGGTTAGACACCTGAAAACGGTGACGGGTAGAGGCTTCATTACCAAACGACAGGCCCGCGTAATGATGCGTCAGCCCTACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCTCCACCCCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGGGGCGGGCAATGTTAACGAGTCCGACTCCAGGGCCGCCATCGGCCCTGCCCAGTCATCTCAGGCATACCACGCGCTGGGGc                                                                                                                                                                                                                     >  2:413985/1‑289 (MQ=255)
                                         tCCCGCATCGGCAAGGGCTTTCATTTTCAGTAAGCCCTGCTTCGCCGCCAGTCGCGGGTTAGACACCTGAAAACGGTGACGGGTAGAGGCTTCATTACCAAACGACAGGCCCGCGTAATGATGCGTCAGCCCTACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGCGTCGGGCTACCGGCTCGCCAACGGCCCACGGCAGCAATCTACGGTAACCCAGTCGCTgcgac                                                                                                                                                                                                                     >  2:3064077/1‑285 (MQ=255)
                                           ccGCATCGGCAAGGGCTTTCATTTTCAGTAAGCCCTGCTTCGCCGCCAGTCGCGGGTTAGACACCTGAAAACGGTGACGGGTAGAGGCTTCATTACCAAACGACCGGCCCGTGTAATGATGCGTCAGCCCTACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGTGGCATACCAGGCGCTGGGGCGa                                                                                                                                                                                                                   <  1:1904266/289‑1 (MQ=255)
                                                   gCAAGGGCTTTCATTTTCAGTAAGCCCTGCTTCGCCGCCAGTCGCGGGTTAGACACCTGAAAACGGTGACGGGTAGAGGCTTCATTACCAAACGACAGGCCCGCGTAATGATGCGTCAGCCCTACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCCCTGGGGCGATGGTTAcc                                                                                                                                                                                                           >  1:1749505/1‑289 (MQ=255)
                                                    cAAGGGCTTTCATTTTCAGTAAGCCCTGCTTCGCCGCCAGTCGCGGGTTAGACACCTGAAAACGGTGACGGGTAGAGGCTTCATTACCAAACGACAGGCCCGCGTAATGATGCGTCAGCCCTACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCCGGGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTAcc                                                                                                                                                                                                           >  1:2641041/1‑289 (MQ=255)
                                                      aGGGCTTTCATTTTAAGTCAGACCTGCCTCGCCGCCAGTCGCGGGGTAGACACCTGAAAGCGGTGACGGGTAGAGGCTTCATTACCGAACGACAGGCCCGCGTAATGATGCGTCAGCCCTACCAGCCCGTCGAAATTGACCTCCCAGGCGTTCATCGCACCACCTCAGCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGa                                                                                                                                                                                                        <  2:214638/289‑1 (MQ=255)
                                                                   tCAGTAAGCCCTGCTTCGCCGCCAGTCGCGGGTTAGATACCTGAAAACGGTGACGGGTAGAGGCTTCATTACCAAACGACAGGCCCGCGTAATGATGCGTCAGCCCTACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAGGCGTGGCGGGCACTGTTAACGAGTCCGACTCCAGGCCCGCCATCGTCCATGCGCAGTAATCTTGGGCAAACCAGGCGCTGGGGCGATGGTTACCGGAAGCCCCAATgcc                                                                                                                                                                                            >  2:477229/1‑288 (MQ=255)
                                                                   tCAGTAAGCCCTGCTTCGCCGCCAGTCGCGGGTTAGACACCTGAAAACGGTGACGGGTAGAGGCTTCATTACCAAACGACAGGCCCGCGTAATGATGCGTCAGCCCTACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCa                                                                                                                                                                                                                                                  <  2:1961119/234‑1 (MQ=255)
                                                                   tCAGTAAGCCCTGCTTCGCCGCCAGTCGCGGGTTAGACACCTGAAAACGGTGACGGGTAGAGGCTTCATTACCAAACGACAGGCCCGCGTAATGATGCGTCAGCCCTACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATAcc                                                                                                                                                                                                                                 <  1:155095/251‑1 (MQ=255)
                                                                   tCAGTAAGCCCTGCTTCGCCGCCAGTCGCGGGTTAGACACCTGAAAACGGTGACGGATAGAGGCTTCATTACCAAACGACAGGCCCGCGTAATGATGCGTCAGCCCTACCAACACGTCGAAATTGACTTCCCAGACGTTCATCTCACCACCTCATCGAAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTACGACTCCAGGCTCGCCCTCGGCCCTGCGCAATAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCactacc                                                                                                                                                                                            >  1:2329884/1‑283 (MQ=255)
                                                                        aaGCCCTGCTTCGCCGCCAGTCGCGGGTTAGACACCTGAAAACGGTGACGGGTAGAGGCTTCATTACCAACCGACAGGCCCGCGTAATGATGCGTCAGCCCTACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGaa                                                                                                                                                                                      <  1:302464/289‑1 (MQ=255)
                                                                            ccTGCTTCGCCGCCAGTCGCGGGTTAGACACCTGAAAACGGTGACGGGTAGAGGCTTCATTACCAAACGACAGGCCCGCGTAATGATGCGTCAGCCCTACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGAATGgc                                                                                                                                                                                  <  1:742058/289‑1 (MQ=255)
                                                                               gCTTCGCCGCCAGTCGCGGGTTAGACACCTGAAAACGGTGACGGGTAGAGGCTTCATTACCAAACGACAGGCCCGCGTAATGATGCGTCAGCCCTACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATg                                                                                                                                                                                                                 >  1:1665493/1‑255 (MQ=255)
                                                                               gCTTCGCCGCCAGTCGCGGGTTAGACACCTGAAAACGGTGACGGGTAGAGGCTTCATTACCAAACGACAGGCCCGCGTAATGATGCGTCAGCCCTACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGAATGGcgcg                                                                                                                                                                               <  1:413985/289‑1 (MQ=255)
                                                                                 ttCGCCGCCAGTCGCGGGTTGGACACCTGAAAACGGTGACGGGTAGAGGCTTCATTACCAAACGACAGGCCCGCGTAATGATGCGTCAGCCCTACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGAATGGCGCGGt                                                                                                                                                                             <  1:392542/289‑1 (MQ=255)
                                                                                          aGTCGCGGGTTAGACACCTGAAAACGGTGACGGGTAGAGGCTTCATTACCAAACGACAGGCCCGCGTAATGATGCGTCAGCCCTACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAAt                                                                                                                                                                                                                                             <  2:2012512/216‑1 (MQ=255)
                                                                                          aGTCGCGGGTTAGACACCTGAAAACGGTGACGGGTAGAGGCTTCATTACCAAACGACAGGCCCGCGTAATGATGCGTCAGCCCTACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAAt                                                                                                                                                                                                                                             >  1:2012512/1‑216 (MQ=255)
                                                                                          aGTCGCGGGTTAGACACCTGAAAACGGTGACGGGTAGAGGCTTCATTACCAAACGACAGGCCCGCGTAATGATGCGTCAGCCCTACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCCCGCCATCCGCCATGCGCCGGAATCTGCGGCATACCAGGCGCTGGGGCGATGGGTACCGGAAGCACCAATGCCGCCCAAAGGCCCGGGACCGgccg                                                                                                                                                                     >  2:898970/1‑286 (MQ=255)
                                                                                                           cTGAAAACGGTGACGGGTAGAGGCTTCATTACCAAACGACAGGCCCGCGTAATGATGCGTCAGCCCTACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGAATGGCGCGGTACTGGCAGCACCGGTAAGCGGTTGGt                                                                                                                                                   >  1:2488831/1‑289 (MQ=255)
                                                                                                            tGAAAACGGTGACGGGTAGAGGCTTCATTACCAAACGACAGGCCCGCGTAATGATGCGTCAGCCCTACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGAATGgcg                                                                                                                                                                                 >  2:339701/1‑258 (MQ=255)
                                                                                                            tGAAAACGGTGACGGGTAGAGGCTTCATTACCAAACGACAGGCCCGCGTAATGATGCGTCAGCCCTACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGAATGgcg                                                                                                                                                                                 <  1:339701/258‑1 (MQ=255)
                                                                                                            tGAAAACGGTGACGGGTAGAGGCTTCATTACCAAACGACAGGCCCGCGTAATGATGCGTCAGCCCTACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGAATGgc                                                                                                                                                                                  <  1:2818654/257‑1 (MQ=255)
                                                                                                            tGAAAACGGTGACGGGTAGAGGCTTCATTACCAAACGACAGGCCCGCGTAATGATGCGTCAGCCCTACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGAATGGCGCGGTACTGGCAGCACCGGTAAGCGGTTTGtt                                                                                                                                                  <  1:976785/289‑1 (MQ=255)
                                                                                                             gAAAACGGTGACGGGTAGAGGCTTCATTACCAAACGACAGGCCCGCGTAATGATGCGTCAGCCCTACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGAATGGCGCGGTACTGGCAGCACCGGTAAGCGGTTTGtt                                                                                                                                                  >  1:436222/1‑288 (MQ=255)
                                                                                                                     tGACGGGTAGAGGCTTCATTACCAAACGACAGGCCCGCGTAATGATGCGCCAGCCCTACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAAt                                                                                                                                                                                                                                             >  2:751097/1‑189 (MQ=255)
                                                                                                                     ggaggggTAGAGCCTTCCTTACCAAACGACAGGCCCGCGTAATGATGCGTCAGCCCTACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTACCGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGAATGGCGCGGTACTGGCAGCACCGGTAAGCGGTTTGTTCCAGTTaa                                                                                                                                          <  2:1694551/284‑1 (MQ=255)
                                                                                                                             agagGCTTCATTACCAAACGACAGGCCCGCGTAATGATGCGTCAGCCCTACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGa                                                                                                                                                                                                                   >  1:2863684/1‑207 (MQ=255)
                                                                                                                               agGCTTCATTACCAAACGACAGGCCCGCGTAATGATGCGTCAGCCCTACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCAt                                                                                                                                                                                                                                                              <  2:1020175/162‑1 (MQ=255)
                                                                                                                               agGCTTCATTACCAAACGACAGGCCCGCGTAATGATGCGTCAGCCCTACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCAt                                                                                                                                                                                                                                                              >  1:1020175/1‑162 (MQ=255)
                                                                                                                                   ttCATTACCAAACGACAGGCCCGCGTAATGATGCGTCAGCCCTACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGAATGgcg                                                                                                                                                                                 <  2:1416762/235‑1 (MQ=255)
                                                                                                                                    tCATTACCAAACGACAGGCCCGCGTAATGATGCGTCAGCCCTACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGAATGGCGCGGTACTGGCAGCACCGGTAAGCGGTTTGTTCCAGTTAACAATCCCCGCCcgcg                                                                                                                           >  1:1556962/1‑288 (MQ=255)
                                                                                                                                     cATTACCAAACGACAGGCCCGCGTAATGATGCGTCAGCCCTACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGAATGgcg                                                                                                                                                                                 >  2:964375/1‑233 (MQ=255)
                                                                                                                                     cATTACCAAACGACAGGCCCGCGTAATGATGCGTCAGCCCTACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGAATGgcg                                                                                                                                                                                 <  2:1717583/233‑1 (MQ=255)
                                                                                                                                           ccaacgacAGGCCCGCGTAATGATGCGTCAGCCCTACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCg                                                                                                                                                                                                                    <  2:2991706/185‑1 (MQ=255)
                                                                                                                                           caaccgaccggCCCGCGTAATCATGCGTCAGCCCTACCCGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGAATGGCGCGGTACTGGCAGCACCGGTAAGCGGTTTGTTCCAGTTAACAATCCCCGCCCGCGCCTCCAGc                                                                                                                   <  1:2543955/280‑1 (MQ=255)
                                                                                                                                           caaacgacAGGCCCGCGTAATGATGCGTCAGCCCTACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCg                                                                                                                                                                                                                    >  1:2991706/8‑192 (MQ=255)
                                                                                                                                           caaacgacAGGCCCGCGTAATGATGCGTCAGCCCTACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCGGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGAATGGCGCGGTACTGGCAGCACCGGTAAGCGGTTTGTTCCAGTTAACAATCCCCGCCCGCGCCCCCAg                                                                                                                    >  2:3266065/8‑288 (MQ=255)
                                                                                                                                               caacAGGCCGGCGTAAGGATGCGCCAGCCCAACCAGCCCGGCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCAGCGGAAAACTCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGAATGGCGCGGTACTGGCAGCACCGGTAAGCGGTTTGTTCCAGTTAACAATCCCCGCCCGCGCCTCCAGCAACa                                                                                                               <  2:2440543/286‑1 (MQ=255)
                                                                                                                                                  cAGGCCCGCGTAATGATGCGTCAGCCCTACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGc                                                                                                                                                                                                                                         <  1:1735396/164‑1 (MQ=255)
                                                                                                                                                     gCCCGCGTAATGATGCGTCAGCCCTACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGAATGGCGCGGTACTGGCAGCACCGGTAAGCGGTTTGTTCCAGTTAACAATCCCCGCCCGCGCCTCCAGCAACAGTTGa                                                                                                          >  1:850529/1‑288 (MQ=255)
                                                                                                                                                      cccGCGTAATGATGCGTCAGCCCTACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGAATGGCGCGGTACTGGCAGCACCGGTAAGCGGTTTGTTCCAGTTAACAATCCCCGCCCGCGCCTCCAGCAACAGTTGAt                                                                                                         <  1:2732969/288‑1 (MQ=255)
                                                                                                                                                      cccGCGTAAGGATGCGTCCGCCCTAACAGCCCGTCGAAAGTGACTTCCCAGGCGTTCATCGCACCACATCATCGGAAAAATCCAGCCG‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGAATGGCGCGGTACTGGCAGCACCGGTAAGCGGTTTGTTCCAGTTAACAATCCCCGCCCGCGCCTCCAGCAACAGTTGAt                                                                                                         <  2:2618852/288‑1 (MQ=255)
                                                                                                                                                          cgTAATGATGCGTCAGCCCTACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGAATGGCGCGGTACTGGCAGCACCGGTAAGCGGTTTGTTCCAGTTaa                                                                                                                                          >  2:1567909/1‑251 (MQ=255)
                                                                                                                                                          cgTAATGATGCGTCAGCCCTACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGAATGGCGCGGTACTGGCAGCACCGGTAAGCGGTTTGTTCCAGTTaa                                                                                                                                          <  1:1567909/251‑1 (MQ=255)
                                                                                                                                                          cgTAATGATGCGTCAGCCCTACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGAATGGCGCGGTACTGGCAGCACCGGTAAGCGGTTTGTTCCAGTTAACAATCCCCGCCCGCGCCTCCAGCAACAGTTGATCGa                                                                                                      >  1:2860662/1‑287 (MQ=255)
                                                                                                                                                                     gTCAGCCCTACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCa                                                                                                                                                                                                                                                  <  1:1705960/136‑1 (MQ=255)
                                                                                                                                                                     gTCAGCCCTACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCt                                                                                                                                                                                                                          <  1:351081/160‑1 (MQ=255)
                                                                                                                                                                     gTCAGCCCTACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCt                                                                                                                                                                                                                          >  2:351081/1‑160 (MQ=255)
                                                                                                                                                                     gTCAGCCCTACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGAATGGCGCGGTACTGGCAGCACCGGTAAGCGGTTTGTTCCAGTTAACAATCCCCGCCCGCGCCTCCAGCAACAGTTGATCGAACTTTTCCCGccc                                                                                         >  1:717726/1‑287 (MQ=255)
                                                                                                                                                                             tACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGAATGGCGCGGt                                                                                                                                                                             <  2:2862726/197‑1 (MQ=255)
                                                                                                                                                                                cAGCCCGTCGAACTTGACTCCCCAGGCGTTCATCGCACCACCTAATCGGAAAAATCCAGGCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGAATGGCGCGGTACTGGCAGCACCGGTAAGCGGTTTGTTCCAGTTAACAATCCCCGCCCGCGCCTCCAGCAACAGTTGATCGAACTTTTCCCGCTCGGGGGAAACCa                                                                              <  2:2745668/289‑1 (MQ=255)
                                                                                                                                                                                cAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGAATGGCGCGGTACTGGCAGCACCGGTAAGCGGTTTGTTCCAGTTAACAATCCCCGCCCGCGCCTCCAGCAACAGTTGATCGAACTTTTCCCGCTCGGGGGAAACCa                                                                              <  1:1074228/289‑1 (MQ=255)
                                                                                                                                                                                   cccGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGAATGGCGCGGTACTGGCAGCACCGGTAAGCGGTTTGTTCCAGTTAACAATCCCCGCCCGCGCCTCCAGCAACAGTTGATCGAACTTTTCCCGCTCGGGGGAAACCaaa                                                                            >  1:2363580/1‑286 (MQ=255)
                                                                                                                                                                                         gAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGAATGGCGCGGTACTGGCAGCACCGGTAAGCGGTTTGTTCCAGTTAACAATCCCCGCCCGCGCCTCCAGCAACAGTTGATCGAACTTTTCCCGCTCGGGGGAAACCAGACCGCAag                                                                     <  2:194071/289‑1 (MQ=255)
                                                                                                                                                                                          aaaTTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGAATGGCGCGGTACTGGCAGCACCGGTAAGCGGTTTGTTCCAGTTAACAATCCCCGCCCGCGCCTCCAGCAACAGTTGATCGAACTTTTCCCGCTCGGGGGAAACCAGACCGCAag                                                                     <  2:2264892/288‑1 (MQ=255)
                                                                                                                                                                                                  ttCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGa                                                                                                                                                                                                                   >  1:765103/1‑138 (MQ=255)
                                                                                                                                                                                                  ttCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGa                                                                                                                                                                                                                   <  2:765103/138‑1 (MQ=255)
                                                                                                                                                                                                  ttCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGAATGGCGCGGTACTGGCAGCACCGGTAAGCGGTTTGTTCCAGTTAACAATCCCCGCCCGCGCCTCCAGCAACAGTTGATCGAACTTTTCCCGCTCGGGGGAAACCAGACCGCAAGAGAGTCCGa                                                            <  2:238518/289‑1 (MQ=255)
                                                                                                                                                                                                       aGGCGTTCATCGCACCCCCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGAATGGCGCGGTACTGGCAGCACCGGTAAGCGGTTTGTTCCAGTTAACAATCCCCGCCCGCGCCTCCAGCAACAGTTGATCGAACTTTTCCCGCTCGGGGGAAACCAGACCGCAag                                                                     <  2:1818038/275‑1 (MQ=255)
                                                                                                                                                                                                            ttCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGAATGgcg                                                                                                                                                                                 <  2:588142/162‑1 (MQ=255)
                                                                                                                                                                                                              cATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGAATGGCGCGGTACTGGCAGCACCGGTAAGCGGt                                                                                                                                                       >  1:818952/1‑186 (MQ=255)
                                                                                                                                                                                                              cATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGAATGGCGCGGTACTGGCAGCACCGGTAAGCGGt                                                                                                                                                       <  2:818952/186‑1 (MQ=255)
                                                                                                                                                                                                              cATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGAATGGCGCGGTACTGGCAGCACCGGTAAGCGGTTTGTTCCAGTTAACAATCCCCGCCCGCGCCTCCAGCAACAGTTGATCGAACTTTTCCCGCTCGGGGGAAACCAGACCGCAAGAGAGACCGAAGCGAGTGTTAt                                                >  1:2286275/1‑289 (MQ=255)
                                                                                                                                                                                                                   caccacCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGAATGGCGCGGTACTGGCAGCACCGGTAAGCGGTTTGTTCCAGTTAACAATCCCCGCCCGCGCCTCCAGCAACAGTTGATCGAACTTTTCCCGCTCGGGGGAAACCAGACCGCACAAGAGTCCGAAGCGAATGTTATTCGc                                            >  2:155580/1‑288 (MQ=255)
                                                                                                                                                                                                                      caccTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGAATGGCGCGGTACTGGCAGCACCGGTAAg                                                                                                                                                           <  1:906620/174‑1 (MQ=255)
                                                                                                                                                                                                                         cTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGAATGGCGCGGTACTGGCAGCACCGGTAAGCGGTTTGTTCCAGTTAACAATCCCCGCCCGCGCCTCCAGCAACAGTTGATCGAACTTTTc                                                                                               <  2:2211538/231‑1 (MQ=255)
                                                                                                                                                                                                                         cTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGAATGGCGCGGTACTGGCAGCACCGGTAAGCGGTTTGTTCCAGTTAACAATCCCCGCCCGCGCCTCCAGCAACAGTTGATCGAACTTTTc                                                                                               >  1:2211538/1‑231 (MQ=255)
                                                                                                                                                                                                                           cATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATgcg                                                                                                                                                                                                                                                    <  1:1829808/80‑1 (MQ=255)
                                                                                                                                                                                                                           cATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGaa                                                                                                                                                                                      <  2:1539283/142‑1 (MQ=255)
                                                                                                                                                                                                                           cATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGAATGGCGCGGTACTGGCAGCACCGGTAAGCGGTTTGTTCCAGTTAACAATCCCCGCCCGCGCCTCCAGCAACAGTTGATCGAACTTTTCCCGCTCGGGGGAAACCa                                                                              >  1:2526315/1‑246 (MQ=255)
                                                                                                                                                                                                                           cATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGAATGGCGCGGTACTGGCAGCACCGGTAAGCGGTTTGTTCCAGTTAACAATCCCCGCCCGCGCCTCCAGCAACAGTTGATCGAACTTTTCCCGCTCGGGGGAAACCAGACCGCAAGCGAGTCCGCGCCGACGTTTATTCGCCTTTCGaa                                    >  2:1725191/1‑288 (MQ=255)
                                                                                                                                                                                                                            aTCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGAATGgc                                                                                                                                                                                  <  1:1443539/145‑1 (MQ=255)
                                                                                                                                                                                                                               ggAAAACTCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGAATGGCGCGGTACTGGCAGCACCGGTAAGCGGTTTGTTCCAGTTAACAATCCCCGCCCGCGCCTCCAGCAACAGTTGATCGAACTTTTCCCGCTCGGGGGAAACCAGACCGCAAGAGAGTCCGAAGCGAGTGTTATTCGCCATTCGAATCGCt                               <  1:1405508/289‑1 (MQ=255)
                                                                                                                                                                                                                                      tCCAGCCC‑GGGGTGAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGAATGGCGCGGTACTGGCAGCACCGGTAAGCGGTTTGTTCCAGTTAACAATCCCCGCCCGCGCCTCCAGCAACAGTTGATCGAACTTTTCCCGCTCGGGGGAAACCAGACCGCAAGAGAGTCCGAAGCGAGTGTTATTCGCCATTCGAATCGCTTCATCGa                        <  1:3270291/289‑1 (MQ=255)
                                                                                                                                                                                                                                                 ggTTAAGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGAATGGCGCGGTACTGGCAGCACCGGTAAGCGGTTTGTTCCAGTTAACAATCCCCGCCCGCGCCTCCAGCAACAGTTGATCGAACTTTTCCCGCTCGGGGGAAACCAGACCGCAAGAGAGTCCGAAGCGAGTGTTATTCGCCATTCGAATCGCTTCATCGAAAGTATCAt               <  1:1427184/288‑1 (MQ=255)
                                                                                                                                                                                                                                                     aaGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGAATGGCGCGGTACTGGCAGCACCGGTAAGCGGTTTGTTCCAGTTAACAATCCCCGCCCGCGCCTCCAGCAACAGTTGATCGAACTTTTCCCGCTCGGGGGAAACCAGACCGCAAGAGAGTCCGAAGCGAGTGTTATTCGCCATTCGAATCGCTTCATCGa                        <  2:1171812/275‑1 (MQ=255)
                                                                                                                                                                                                                                                     aaGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGAATGGCGCGGTACTGGCAGCACCGGTAAGCGGTTTGTTCCAGTTAACAATCCCCGCCCGCGCCTCCAGCAACAGTTGATCGAACTTTTCCCGCTCGGGGGAAACCAGACCGCAAGAGAGTCCGAAGCGAGTGTTATTCGCCATTCGAATCGCTTCATCGa                        >  1:1171812/1‑275 (MQ=255)
                                                                                                                                                                                                                                                      aGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGAATGGCGCGGTACTGGCAGCACCGGTAAGCGGTTTGTTCCAGTTAACAATCCCCGCCCGCGCCt                                                                                                                        <  1:1798212/178‑1 (MQ=255)
                                                                                                                                                                                                                                                      aGCGTGGCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGAATGGCGCGGTACTGGCAGCACCGGTAAGCGGTTTGTTCCAGTTAACAATCCCCGCCCGCGCCt                                                                                                                        >  2:1798212/1‑178 (MQ=255)
                                                                                                                                                                                                                                                          gggCGGGAAAGGTTAACTGGTCCCACGCCGGGCTCGCCGTGGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGAATGGCGCGGTACTGGCAGCACCGGTAAGCGGTTTGTTCCAGTTAACAATCCCCGCCCGCGCCTCCAGCAACAGTTGATCGAACTTTTCCCGCTCGGGGGAAACCAGACCGCAAGAGAGTCCGAAGCGAGTGTTATTCGCCATTCGAATCGCTTCATCGAAAGTATCATAACGCCAGa      <  2:1738206/287‑1 (MQ=255)
                                                                                                                                                                                                                                                           ggCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGAATGGCGCGGTACTGGCAGCACCGGTAAGCGGTTTGTTCCAGTTAACAATCCCCGCCCGCGCCTCCAGc                                                                                                                   >  1:325987/1‑178 (MQ=255)
                                                                                                                                                                                                                                                           ggCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGAATGGCGCGGTACTGGCAGCACCGGTAAGCGGTTTGTTCCAGTTAACAATCCCCGCCCGCGCCTCCAGCAACAGTTGATCGAACTTTTCCCGCTCGGGGGAAACCa                                                                              >  2:2897539/1‑215 (MQ=255)
                                                                                                                                                                                                                                                           ggCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGAATGGCGCGGTACTGGCAGCACCGGTAAGCGGTTTGTTCCAGTTAACAATCCCCGCCCGCGCCTCCAGCAACAGTTGATCGAACTTTTCCCGCTCGGGGGAAACCa                                                                              <  1:2106544/215‑1 (MQ=255)
                                                                                                                                                                                                                                                           ggCGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGAATGGCGCGGTACTGGCAGCACCGGTAAGCGGTTTGTTCCAGTTAACAATCCCCGCCCGCGCCTCCAGCAACAGTTGATCGAACTTTTCCCGCCCGGGGGCAACCAGACCGCAAGAGACTTCGCAGCGATTGTTATTCGCCATTCGAATCGCATCATCGACAGTCTCAAACCGCCAGAc     >  2:3141058/1‑288 (MQ=255)
                                                                                                                                                                                                                                                             cGGGCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGAATGGCGCGGTACTGGCAGCACCGGTAAGCGGTTTGTTCCAGTTAACAATCCCCGCCCGCGCCTCCAGCAACAGTTGATCGAACTTTTCCCGCTCGGGGGAAACCAGACCGCAAGAGAGTCCGAAGCGAGTGTTATTCGCCATTCGAATCGCTTCATCGAAAGTATCATAACGCCAGAcgc   >  1:3301276/1‑288 (MQ=255)
                                                                                                                                                                                                                                                              gggCAATGTTAACGAGTCCGACTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGAATGGCGCGGTACTGGCAGCACCGGTAAGCGGTTTGTTCCAGTTAACAATCCCCGCCCGCGCCTCCAGCAACAGTTGATCGAACTTTTCCCGCTCGGGGGAAACCAGACCGCAAGAGAGTCCGAAGCGAGTGTTATTCGCCATTCGAATCGCTTCATCGAAAGTATCATAACGCCAGAcgcg  <  1:1966280/288‑1 (MQ=255)
                                                                                                                                                                                                                                                                                |||                                                                                                                                                                                                                                                                           
ATAAACGGACGCTCGTGCGGCGGGATCACGGCCTGGGGGAATCCCGCATCGGCAAGGGCTTTCATTTTCAGTAAGCCCTGCTTCGCCGCCAGTCGCGGGTTAGACACCTGAAAACGGTGACGGGTAGAGGCTTCATTACCAAAGCTCAGGCCCGCGTAATGATGCGTCAGCCCTACCAGCCCGTCGAAATTGACTTCCCAGGCGTTCATCGCACCACCTCATCGGAAAAATCCAGCCC‑GGGGTTAAGCGTGGCGGGCAATGTTAAGCTGTCGCTCTCCAGGCTCGCCATCGGCCATGCGCAGTAATCTGCGGCATACCAGGCGCTGGGGCGATGGTTACCGGAAGCACCAATGCCGCCGAATGGCGCGGTACTGGCAGCACCGGTAAGCGGTTTGTTCCAGTTAACAATCCCCGCCCGCGCCTCCAGCAACAGTTGATCGAACTTTTCCCGCTCGGGGGAAACCAGACCGCAAGAGAGTCCGAAGCGAGTGTTATTCGCCATTCGAATCGCTTCATCGAAAGTATCATAACGCCAGACGCG  >  CP042583/1510043‑1510583

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A