Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F210 I1 R1	4928	385.2	6658600	97.5%	6492135	231.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP042583	1,516,395	3 bp→TCG	intergenic (–/–)	– / –	–/–

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP042583	1,516,395	0	A	T	99.3%	720.9 / NA	306	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base A (0/0); major base T (160/142); minor base C (2/0); total (163/143)
Fisher's exact test for biased strand distribution p-value = 5.01e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*	CP042583	1,516,396	0	G	C	99.7%	723.6 / NA	306	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base G (0/1); new base C (162/142); total (163/143)
Fisher's exact test for biased strand distribution p-value = 4.69e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*	CP042583	1,516,397	0	C	G	99.7%	721.9 / NA	306	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base C (0/0); major base G (162/142); minor base T (1/0); total (163/143)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01

Only 100 of 306 total aligned reads displayed.

CAAAAAATGAAGGATAAAACGATGTTGCAACATTATAGTGTGAGTTGGAAAAAAGGACTGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGCGGCGGCAAAAGTGGAATACGACGGACTTAGCAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAAAGCCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTAGCGTCAACTGGCAAGGGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGGCAGCAGAAGAGAAGAAAACGGGTTGCCTGGTGTGTCTGGATAGCTGC  >  CP042583/1516116‑1516676

|||

cAAAAAATGAAGGATAGAACGATGTTGCAACATTATTCAGTGTCATGGAAAAAAGGACTGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGCGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTa                                                                                                                                                                                                                                                                                   <  2:1708234/289‑1 (MQ=255)

         aaGGATAGAACGATGTTGCAACATTATTCAGTGTCATGGAAAAAAGGACTGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGCGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTAt                                                                                                                                                                                                                                                                           >  1:2860714/1‑288 (MQ=255)

                  aCGATGTTGCAACATTATTCAGTGTCATGGAAAAAAGGACTGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGCGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGa                                                                                                                                                                                                                                                                <  2:1174636/289‑1 (MQ=255)

                    gATGTTGCAACATTATTCAGTGTCATGGAAAAAAGGACTGGCTGCACTCTGTTTACTGGCTTTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGCGGCGGCAAAAGTGGAATACTACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGaaa                                                                                                                                                                                                                                                              <  1:431880/289‑1 (MQ=255)

                      tGTTGCAACATTATTCAGTGTCATGGAAAAAAGGTCTGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGCGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAg                                                                                                                                                                                                                                                             <  1:922038/288‑1 (MQ=255)

                      tGTTGCAACATTATTCAGTGTCATGGAAAAAAGGACTGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGCGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAACTCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGc                                                                                                                                                                                                                                                            >  2:674749/1‑289 (MQ=255)

                       gTTGCAACATTATTCAGTGTCATGGAAAAAAGGCCTGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGCGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCa                                                                                                                                                                                                                                                           <  2:859824/289‑1 (MQ=255)

                       gTTGCAACATTATTCAGTGTCATGGAAAAAAGGACTGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGCGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCa                                                                                                                                                                                                                                                           >  1:859824/1‑289 (MQ=255)

                               attattcagtgtcatGGAAAAAAGGACTGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGCGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGa                                                                                                                                                                                                                                                   <  2:236962/275‑1 (MQ=255)

                                ttattcagtgtcatGGAAAAAAGGACTGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGCGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGaa                                                                                                                                                                                                                                                  >  2:2009947/14‑289 (MQ=255)

                                  attcagtgtcatGGAAAAAAGGACTGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGCGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAg                                                                                                                                                                                                                                                 >  1:2270332/12‑288 (MQ=255)

                                  attcagtgtcatGGAAAAAAGGACTGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGCGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGGATTGTGTTTAAAGATGGCTCC‑AACGGACATAAACCTCTACTTATGGGTTATGCG‑ACCCCCAACGCATTTTATGAAg                                                                                                                                                                                                                                                 >  2:2871116/12‑288 (MQ=255)

                                   tgacgtgtgatGGAACATAGGACTGGCTGCACTCATGTTACTGTGTGTGGCTGTGCTTAGGCGCTGCGAACAACAAGGGAATGGGGCGGAAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGcc                                                                                                                                                                                                                                               <  2:1797200/279‑1 (MQ=255)

                                        tgtcatGGAAAAAAGGACTGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGCGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGGTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATAAAGACCTTaa                                                                                                                                                                                                                                          >  2:1245601/6‑289 (MQ=255)

                                        tggcatgtaaaaaaGGCCTGGCTGCACTGTGTTTACTTGCTATTGCTGGGCTTAGCGGCTGCGATCGACAAGAGAATGCGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGcc                                                                                                                                                                                                                                               <  2:1328479/276‑1 (MQ=255)

                                             tGGAAAAAAGGACTGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGCGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAagag                                                                                                                                                                                                                                      <  1:473200/288‑1 (MQ=255)

                                              tggaaaaaGGACTGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGCGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGc                                                                                                                                                                                                                                    <  1:3079514/286‑1 (MQ=255)

                                              tggaaaaaGGACTGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGCGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGc                                                                                                                                                                                                                                    >  2:3079514/4‑289 (MQ=255)

                                              ggAAAAAATGACTGGGTGCACTCTGTTTACTGGCGTTTGCTGGGCATGGCGGCTGCACTCAACAAGAGAATGGCGCGGCAAAAGTGGAATACGACGTACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGc                                                                                                                                                                                                                                    <  2:2122881/289‑1 (MQ=255)

                                              ggAAAAAAGGACTGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGCGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGc                                                                                                                                                                                                                                    <  1:2193461/289‑1 (MQ=255)

                                                  aaaaGGACTGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGCGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAgg                                                                                                                                                                                                                                     >  1:1328479/1‑284 (MQ=255)

                                                            gCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGCGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCgg                                                                                                                                                                                                                      >  1:1885633/1‑289 (MQ=255)

                                                                      gTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGCGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGATTAAAGATGGCCCC‑AACGGACATAAATAGCTGTTTAGGGGTT‑TGTGTGCCCCGAAAGCCTTTTAGTAAGCCTTGAAAAAGGCAGGTGGTCTGACGGGCGgaaaaac                                                                                                                                                                                                            >  2:648/1‑286 (MQ=255)

                                                                          agtGGCTGGTGCGGTGCTTGGCGGCTTCGATCAACAAGAGAAGACGGCGGGAAAGGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACg                                                                                                                                                                                                        <  2:2543415/287‑1 (MQ=255)

                                                                          aCTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGCGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACg                                                                                                                                                                                                        >  1:3319079/1‑289 (MQ=255)

                                                                          aCTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGCGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACg                                                                                                                                                                                                        <  1:1651402/289‑1 (MQ=255)

                                                                            tGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGCGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGAt                                                                                                                                                                                                      <  2:471068/289‑1 (MQ=255)

                                                                               cTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGCGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGaa                                                                                                                                                                                                                                                               <  1:1219809/229‑1 (MQ=255)

                                                                               cTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGCGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGa                                                                                                                                                                                                   >  1:2398004/1‑289 (MQ=255)

                                                                               cTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGCGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGa                                                                                                                                                                                                   >  2:2608364/1‑289 (MQ=255)

                                                                               cTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGCGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGa                                                                                                                                                                                                   >  1:2578153/1‑289 (MQ=255)

                                                                                 gTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGCGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTa                                                                                                                                                                                                                                                                                   >  2:3250287/1‑208 (MQ=255)

                                                                                 gTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGCGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTa                                                                                                                                                                                                                                                                                   <  1:3250287/208‑1 (MQ=255)

                                                                                         gCTTAGCGGCTGCGATCAACAAGAGAATGCGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGa                                                                                                                                                                                          <  1:2386321/288‑1 (MQ=255)

                                                                                          attAGCGGCTGCGATCAACAAGAGAATGCGGCGGCAAAAGTGCAATACGACGGACTTTCGAACAGCCAACCGCTGCGTCTCGATGCCAATAACCATACGGGAACCATGCTGGCGCCAATTAATGGTCGTTTCCTCACCGACGCCACTCGTCACGGTATAGTGTTTAAAGATGGCTAC‑AACCGAACTAAAGCGCCGTTTCTTGGTTCTGCG‑ACCCCGAAAGCATTTTATGAACCCCTGAAGAAGGCAGGTGGTACGCCGGGTGAAAACATGACGACCGATAATAAAGaac                                                                                                                                                                                        >  2:1655632/2‑288 (MQ=255)

                                                                                             aGCGGCTGCGATCAACAAGAGAATGCGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACCCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAACCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGAAGGATAAATAAGAAACGa                                                                                                                                                                                     >  2:2616985/1‑289 (MQ=255)

                                                                                                  cTGCGATCAACAAGAGAATGCGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGc                                                                                                                                                                                                                         <  1:1002813/248‑1 (MQ=255)

                                                                                                    gCGATCAACAAGAGAATGCGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGc                                                                                                                                                                                                                                    >  1:541758/1‑235 (MQ=255)

                                                                                                        tCAACAAGGGAATGCGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTcaca                                                                                                                                                                          <  1:3108155/289‑1 (MQ=255)

                                                                                                                  aaTGGGGCGGCAAAAGTGGAATACAGCGGAATTTCGAACAGCCAACCGCTGAGTGTGGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCaaa                                                                                                                                                                 <  2:2537157/288‑1 (MQ=255)

                                                                                                                  aaTGCGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTc                                                                                                                                                                                  <  2:1375700/271‑1 (MQ=255)

                                                                                                                         cggcAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGgca                                                                                                                                                                      >  2:156932/1‑276 (MQ=255)

                                                                                                                         cggcAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGgca                                                                                                                                                                      <  1:156932/276‑1 (MQ=255)

                                                                                                                            cAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATAtttc                                                                                                                                                      >  1:2873134/1‑287 (MQ=255)

                                                                                                                               aaGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATAtttcggt                                                                                                                                                   <  1:2942368/289‑6 (MQ=255)

                                                                                                                                   ggAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGTAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATAtttcggtcaa                                                                                                                                                <  2:3149177/288‑9 (MQ=255)

                                                                                                                                            cgGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGc                                                                                                                                                                                                                                    <  2:1759643/195‑1 (MQ=255)

                                                                                                                                                   tcgaaCAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATg                                                                                                                                                                                                                                                    <  1:276136/169‑1 (MQ=255)

                                                                                                                                                   tcgaaCAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAAGGGGCGGCaa                                                                                                                               >  1:1384613/4‑289 (MQ=255)

                                                                                                                                                           ccAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAg                                                                                                                                                                                                                                                 >  1:376496/1‑167 (MQ=255)

                                                                                                                                                                     cGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATg                                                                                                                                                                                                                                                    >  2:818612/1‑154 (MQ=255)

                                                                                                                                                                     cGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGaaa                                                                                                                                                                                        <  2:533626/214‑1 (MQ=255)

                                                                                                                                                                                  ataaacgaaCGGTAACCAGGCTGGTGAAAATTAATTGTCGTTTACTCACCGACGACAGTCGTCACGGTATTGTGTTTAAAGATTGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGAG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATACTAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAAGGGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGGTGa                                                                                                <  2:1052272/281‑1 (MQ=255)

                                                                                                                                                                                   tAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTCTGGTCAACTGGCAAGGGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGAc                                                                                               >  1:2906886/1‑289 (MQ=255)

                                                                                                                                                                                          aCGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAAGGGGCCGCAAAAGCGTCATCCTTCGATGTCGTGCtttttgcacgtcatg                                                                                        >  2:2485295/1‑280 (MQ=255)

                                                                                                                                                                                           cGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTc                                                                                                                                                                                  >  1:590484/1‑198 (MQ=255)

                                                                                                                                                                                           cGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTc                                                                                                                                                                                  <  2:590484/198‑1 (MQ=255)

                                                                                                                                                                                              tAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAAGGGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCaa                                                                                    >  1:788541/1‑289 (MQ=255)

                                                                                                                                                                                              tAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAAGGGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCa                                                                                     <  1:712675/288‑1 (MQ=255)

                                                                                                                                                                                              tAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAAGGGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCa                                                                                     <  1:1866123/288‑1 (MQ=255)

                                                                                                                                                                                              tAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCCCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAAGGGGCGGCAAAAGCGTATTCCTTCGATGAAGTGAttgtt                                                                                                  <  2:1826081/275‑1 (MQ=255)

                                                                                                                                                                                                aCCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAg                                                                                                                                                                                                                                  <  1:1261950/145‑1 (MQ=255)

                                                                                                                                                                                                aCCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAAGGGGCGGCAAAAGCGTATTCCTTCGa                                                                                                               >  1:2518352/1‑260 (MQ=255)

                                                                                                                                                                                                aCCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAAGGGGCGGCAAAAGCGTATTCCTTCGATGAAGTGa                                                                                                       <  2:6184/268‑1 (MQ=255)

                                                                                                                                                                                                aCCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAAGGGGCGGCAAAAGCGTATTCCTTCGATGAAGTGa                                                                                                       >  1:6184/1‑268 (MQ=255)

                                                                                                                                                                                                 ccATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAAGGGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGaa                                                                                 >  1:2653977/1‑289 (MQ=255)

                                                                                                                                                                                                    tGCTGGTGCAAATTACTGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGCTGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCTCTGCAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGCTAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAAGGGGCGGCAAAAGCGTATTCCCTCGATGACGTGATTGTTGACAGTAATGGCAAgcc                                                                                 >  2:3212689/1‑284 (MQ=255)

                                                                                                                                                                                                    tGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTa                                                                                                                                                                                                                                                                                   <  2:2830032/93‑1 (MQ=255)

                                                                                                                                                                                                    tGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAAGGGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGaa                                                                                 >  2:2311479/1‑286 (MQ=255)

                                                                                                                                                                                                        ggTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAAGGGGCGGCAAAAGCGTATTCCTTCGATGAAGTGa                                                                                                       >  1:3198171/1‑260 (MQ=255)

                                                                                                                                                                                                        ggTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAAGGGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGAc                                                                          >  1:144715/1‑289 (MQ=255)

                                                                                                                                                                                                          tGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATAtttc                                                                                                                                                      >  1:1738152/1‑209 (MQ=255)

                                                                                                                                                                                                          tGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAAGGGGCGGCAAAAGCGTATTCCTTCGATGAAGTGAttgtt                                                                                                  <  1:1818337/263‑1 (MQ=255)

                                                                                                                                                                                                          tGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAAGGGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACAt                                                                        >  1:2689290/1‑289 (MQ=255)

                                                                                                                                                                                                           gCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAAGGGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATg                                                                       >  1:2537992/1‑289 (MQ=255)

                                                                                                                                                                                                                         gTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGc                                                                                                                                                                                                                                    <  1:26158/118‑1 (MQ=255)

                                                                                                                                                                                                                         gTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCaa                                                                                                                                         >  1:2078068/1‑209 (MQ=255)

                                                                                                                                                                                                                                    gacgacACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGGAACTACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAAGGGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGgcag                                              <  2:2578153/289‑1 (MQ=255)

                                                                                                                                                                                                                                    gacgacACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAAGGGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGgcag                                              <  2:2391392/289‑1 (MQ=255)

                                                                                                                                                                                                                                      cgacACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAAGGGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGgcagca                                            <  1:1775132/289‑1 (MQ=255)

                                                                                                                                                                                                                                      cgacACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAAGGGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGgcagca                                            <  2:722679/289‑1 (MQ=255)

                                                                                                                                                                                                                                            tCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAAGGGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGGCAGCagaagag                                      <  2:3205825/289‑1 (MQ=255)

                                                                                                                                                                                                                                                      aTTGTGTTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAAGGGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGGCAGCAGAAGAGAAGAAAACgg                            <  2:2238985/289‑1 (MQ=255)

                                                                                                                                                                                                                                                      aTTGTGGTTAAAGATTGCTCC‑AACGGACATAAATCGCTGTGTAGTGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAAGGGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGGCAGCAGAAGAGAAGAAAACgg                            <  2:2701511/289‑1 (MQ=255)

                                                                                                                                                                                                                                                          tgtTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAAGGGGCGGCAAAAGCGTATTCCTTCGATGAAGTGAttgtt                                                                                                  >  2:2049957/1‑215 (MQ=255)

                                                                                                                                                                                                                                                          tgtTTAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAAGGGGCGGCAAAAGCGTATTCCTTCGATGAAGTGAttgtt                                                                                                  <  1:2049957/215‑1 (MQ=255)

                                                                                                                                                                                                                                                            tttAAAGATGGCTCC‑AACGGAGATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAAGGGGCGGCAAAAGCGTATTCCTTCGATGAAGTGa                                                                                                       >  2:285665/1‑208 (MQ=255)

                                                                                                                                                                                                                                                            tttAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAAGGGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGa                                                                                                >  2:2927835/1‑215 (MQ=255)

                                                                                                                                                                                                                                                            cctAAAGATGGCTCC‑AACGGTCATAAATCGCTGCTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGGGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTAACGTCACATGCAGCAAACTGGATATTTCGGTCAACTTGTAATGGGCGGCAAGAGCGTATTCCTTCGATGACGCGATTGTTGACAGTAATGGCAAGATACTGGTCATGCGCTCTGGCGGTAATTTAACGGCATCAGAAGAGAAGAAAACGGGTTgac                      >  2:379710/3‑287 (MQ=255)

                                                                                                                                                                                                                                                             ttAAAGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAAGGGGCGGCAAAAGCGTATTCCTTCGATGaa                                                                                                           <  2:1868019/203‑1 (MQ=255)

                                                                                                                                                                                                                                                               taaagtGGCTCCAAAGGGACTTAAATG‑CTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAAGGGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGGCAGCAGAAGAGAAGAAAACGGGTTGCCTgg                   <  1:321137/284‑1 (MQ=255)

                                                                                                                                                                                                                                                               aaaGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACg                                                                                                                                                                                                        >  2:3303942/1‑108 (MQ=255)

                                                                                                                                                                                                                                                               aaaGATGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAAGGGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGGCAGCAGAAGAGAAGAAAACGGGTTGCCTgg                   <  1:648/289‑1 (MQ=255)

                                                                                                                                                                                                                                                                    tGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGAt                                                                                                                                                                                                      >  2:2427682/1‑105 (MQ=255)

                                                                                                                                                                                                                                                                    tGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGAt                                                                                                                                                                                                      <  1:2427682/105‑1 (MQ=255)

                                                                                                                                                                                                                                                                    tGGCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAAGGGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGGCAGCAGAAGAGAAGAAAACGGGTTGCCTGgtgt                <  1:2009947/287‑1 (MQ=255)

                                                                                                                                                                                                                                                                      gCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAAGGGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGGCAGCagaagag                                      <  1:1150426/263‑1 (MQ=255)

                                                                                                                                                                                                                                                                      gCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAAGGGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGGCAGCAGAAGAGAAGAAAACGGGTTGCCTgg                   >  1:326597/1‑282 (MQ=255)

                                                                                                                                                                                                                                                                      gCTCC‑AACGGACATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAAGGGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGGCAGCAGAAGAGAAGAAAACGGGTTGCCTGgtgtg               >  1:2824909/1‑286 (MQ=255)

                                                                                                                                                                                                                                                                                 aCATAAATCGCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAAGGGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGGAAGCAGAAGAGAAGAAAACGGGTTGCCTGGGGTGTCTGGCTAGCTGc  >  2:1274782/1‑289 (MQ=255)

|||

CAAAAAATGAAGGATAAAACGATGTTGCAACATTATAGTGTGAGTTGGAAAAAAGGACTGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGCGGCGGCAAAAGTGGAATACGACGGACTTAGCAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGTTTAAAGATGGCTCC‑AACGGACATAAAAGCCTGTTTATGGGTTATGCG‑ACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTAGCGTCAACTGGCAAGGGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGGCAGCAGAAGAGAAGAAAACGGGTTGCCTGGTGTGTCTGGATAGCTGC  >  CP042583/1516116‑1516676

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A