Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F210 I1 R1	4928	385.2	6658600	97.5%	6492135	231.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP042583	1,663,413	3 bp→TCG	intergenic (–/–)	– / –	–/–

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP042583	1,663,413	0	A	T	99.5%	866.1 / NA	364	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base A (0/0); major base T (166/196); minor base G (1/1); total (167/197)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*	CP042583	1,663,414	0	G	C	99.2%	863.4 / NA	364	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base G (2/1); new base C (165/196); total (167/197)
Fisher's exact test for biased strand distribution p-value = 5.96e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*	CP042583	1,663,415	0	C	G	99.7%	863.4 / NA	365	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base C (0/1); new base G (166/196); total (167/198)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

Only 100 of 365 total aligned reads displayed.

GGAAATGCTGTACTTGCAAAAAACGTTGGGGCTACAAGGTTTACCGCTGATTGCCGAAAATGGCGCAGTGATCCAGCTTGCTGAGCAATGGCAGGAGATAGACGGTTTTCCACGCATCATCAGTGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGAGCGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCACGTACTGGATGCTTCTGCCGGAAAAGATCAGGCTGCCAACTGGATTATCGCGACCTATCAACAATTGAGTGGCAAACGCCCAACCACACTTGGCCTGGGCGATGGGCCAAACGATGCGCCCTTACTGGAGGTAATGGATTACGCGGTGATTGTGAAAGGGCTAAATCGTGAAGGGGTGCAT  >  CP042583/1663133‑1663697

|||

      gCTGTACTTGCAAAAAACGTTGGGGCTACAAGGTTTACCGCTGATTGCCGAAAATGGCGCAGTGATCCAGCTTGCTGAGCAATGGCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATc                                                                                                                                                                                                                                                                                <  2:1323312/289‑1 (MQ=255)

      gCTGTACTTGCAAAAAACGTTGGGGCTACAAGGTTTACCGCTGATTGCCGAAAATGGCGCAGTGATCCAGCTTGCTGAGCAATGGCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGACGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATc                                                                                                                                                                                                                                                                                <  1:1167931/289‑1 (MQ=255)

        tGTACTTGCAAAAAACGTTGGGGCTACAAGGTTTACCGCTGATTGCCGAAAATGGCGCAGTGATCCAGCTTGCTGAGCAATGGCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGGGCGTACGCAGCGTCATGAGGCGTCGGTAAGGCTAAACTg                                                                                                                                                                                                                                                                              >  2:885136/1‑289 (MQ=255)

              tGCAAAAAACGTTGGGGCTACAAGGTTTACCGCTGATTGCCGAAAATGGCGCAGTGATCCAGCTTGCTGAGCAATGGCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGa                                                                                                                                                                                                                                                                        <  1:1645688/289‑1 (MQ=255)

                     aaCGTTGGGGCTACAAGGTTTACCGCTGATTGCCGAAAATGGCGCAGTGATCCAGCTTGCTGAGCAATGGCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGAc                                                                                                                                                                                                                                                                 <  2:3074906/289‑1 (MQ=255)

                          tGGGGCTACAAGGTTTACCGCTGATTGCCGAAAATGGCGCAGTGATCCAGCTTGCTGAGCAATGGCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCg                                                                                                                                                                                                                                                            <  2:455644/289‑1 (MQ=255)

                                 aCAAGGTTTACCGCTGATTGCCGAAAATGGCGCAGTGATCCAGCTTGCTGAGCAATGGCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGca                                                                                                                                                                                                                                                     <  1:2775430/289‑1 (MQ=255)

                                         tACCGCTGATTGCCGAAAACGGCGCAGTGATCCAGCTTGCTGAGCAATGGCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTa                                                                                                                                                                                                                                              >  1:2721767/1‑288 (MQ=255)

                                            cGCTGATTGCCGAAAATGGCGCAGTGATCCAGCTTGCTGAGCAATGGCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATc                                                                                                                                                                                                                                                                                >  1:529970/1‑251 (MQ=255)

                                               tGATTGCCGAAAATGGCGCAGTGATCCAGCTTGCTGAGCAATGGCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTc                                                                                                                                                                                                                                        >  2:852237/1‑288 (MQ=255)

                                                 aTTGCCGAAAATGGCGCAGTGATCCAGCTTGCTGAGCAATGGCTGGAGCTAGACGGTTTTCCACGCATCATCCCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGGCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCCTCATGAGGCCTCGGTAACGCTACACTGGCGCGACAGTTGCGGGCGTCAGGCACAAATTACCGCTCgg                                                                                                                                                                                                                                      >  2:2721358/1‑287 (MQ=255)

                                                 aTTGCCGAAAATGGCGCAGTGATCCAGCTTGCTGAGCAATGGCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCg                                                                                                                                                                                                                                       >  1:141601/1‑287 (MQ=255)

                                                                  aGTGGTCCAGCGTGGTGAGGAATGGCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGGATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTAACGACTTTTGGTGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGGGGCGCTGACGCCGCTTCATGAGGCGTCGGTAACGCTAATTTGGGGCGACAGTGACGAGCGGATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCtt                                                                                                                                                                                                                     <  2:2073281/288‑1 (MQ=255)

                                                                    tGATCCAGCTTGCTGAGCAATGGCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGa                                                                                                                                                                                                                                                                        >  1:2079624/1‑235 (MQ=255)

                                                                     gATCCAGCTTGCTGAGCAATGGCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAg                                                                                                                                                                                                                 <  1:2226739/289‑1 (MQ=255)

                                                                              tGCTGAGCAATGGCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCg                                                                                                                                                                                                                                           <  1:618828/254‑1 (MQ=255)

                                                                              tGCTGAGCAATGGCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCg                                                                                                                                                                                                                                           >  2:618828/1‑254 (MQ=255)

                                                                                cTGAGCAATGGCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGca                                                                                                                                                                                                                                                     >  1:36195/1‑242 (MQ=255)

                                                                                      aaTGGCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTgcgc                                                                                                                                                                                                 <  1:1905802/288‑1 (MQ=255)

                                                                                      aaTGGCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTgcg                                                                                                                                                                                                  <  1:114007/287‑1 (MQ=255)

                                                                                               agaTAGACGGTTTTCCACGCAGCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGGTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGc                                                                                                                                                                                        <  2:1416767/288‑1 (MQ=255)

                                                                                                    gACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCACGt                                                                                                                                                                                    >  1:1936363/1‑287 (MQ=255)

                                                                                                         ttttCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGGGCGCTTCTGGCACGTACTGGAt                                                                                                                                                                             >  1:2098901/1‑289 (MQ=255)

                                                                                                         ttttCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGc                                                                                                                                                                                        <  2:1411575/278‑1 (MQ=255)

                                                                                                              cACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCtt                                                                                                                                                                                                                     >  2:1663030/1‑244 (MQ=255)

                                                                                                                     catctcaggTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGTGGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTgcgcgc                                                                                                                                                                                               >  2:2492807/8‑259 (MQ=255)

                                                                                                                       tctcaggTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCACGTACTGGATGCTTCTGCCGGaaa                                                                                                                                                               >  1:185255/6‑289 (MQ=255)

                                                                                                                                  aGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGa                                                                                                                                                                                                                                                               <  2:1872383/182‑1 (MQ=255)

                                                                                                                                  aGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAgg                                                                                                                                                                                                       <  2:1920674/238‑1 (MQ=255)

                                                                                                                                  aGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCACGTACTGGATGCTTCTGCCGGAAAAGATCAGGCt                                                                                                                                                     >  1:701000/1‑288 (MQ=255)

                                                                                                                                  aGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCACGTACTGGATGCTTCTGCCGGAAAAGATCAGGCt                                                                                                                                                     >  1:1582001/1‑288 (MQ=255)

                                                                                                                                  aGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCACGTACTGGATGCTTCTGCCGGAAAAGATCAGGCt                                                                                                                                                     >  1:1111148/1‑288 (MQ=255)

                                                                                                                                  aGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCACGTACTGGATGCTTCTGCCGGAAAAGATCAGGCt                                                                                                                                                     >  1:3023972/1‑288 (MQ=255)

                                                                                                                                  aGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCACGTACTGGATGCTTCTGCCGGAAAAGATCAGGCTg                                                                                                                                                    >  2:1255904/1‑289 (MQ=255)

                                                                                                                                       tGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCACGTACTGGATGCTTCTGCCGGAAAAGATCAGGCTGCCa                                                                                                                                                 >  2:1287141/1‑287 (MQ=255)

                                                                                                                                        ggCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGgcg                                                                                                                                                                                                                                                                           <  1:1017348/164‑1 (MQ=255)

                                                                                                                                        ggCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCACGTACTGGATGCTTCTGCCGGAAAAGATCAGGCTGCCa                                                                                                                                                 >  1:92292/1‑286 (MQ=255)

                                                                                                                                        ggCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCACGTACTGGATGCTTCTGCCGGAAAAGATCAGGCTGCCa                                                                                                                                                 >  1:2553181/1‑286 (MQ=255)

                                                                                                                                        ggCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCACGTACTGGATGCTTCTGCCGGAAAAGATCAGGCTGCCa                                                                                                                                                 >  1:2821615/1‑286 (MQ=255)

                                                                                                                                        ggCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCACGTACTGGATGCTTCTGCCGGAAAAGATCAGGCTGCCa                                                                                                                                                 >  1:1615114/1‑286 (MQ=255)

                                                                                                                                        ggCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCACGTACTGGATGCTTCTGCCGGAAAAGATCAGGCTGCCa                                                                                                                                                 >  1:1719016/1‑286 (MQ=255)

                                                                                                                                        ggCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCACGTACTGGATGCTTCTGCCGGAAAAGATCAGGCTGCCa                                                                                                                                                 >  2:2360191/1‑286 (MQ=255)

                                                                                                                                        ggCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCACGTACTGGATGCTTCTGCCGGAAAAGATCAGGCTGCCa                                                                                                                                                 >  2:2765950/1‑286 (MQ=255)

                                                                                                                                        ggCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCACGTACCGGATGCTTCTGCCGGAAAAGATCAGGCGGCCa                                                                                                                                                 >  2:1593629/1‑286 (MQ=255)

                                                                                                                                        ggCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTAATGAGGCGTCGGTAACGCTAATCTGGCGAGACAGTGACGAGCGTATGGCACCATTTACCGCTCGTCTGAACGAACGGGGCTTCCAGTTTAAGCAGGGTGCGCGCTGCCGGCCAGTACTGGATGGTTCTGCCGGAAAAGATCGGGCTTCCAAc                                                                                                                                               >  2:1166101/1‑288 (MQ=255)

                                                                                                                                              aTCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAg                                                                                                                                                                                                                 >  1:991458/1‑216 (MQ=255)

                                                                                                                                                    cTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCACGTACTGGATGCTTCTGCCGGAAAAGATCAGGCTGCCAACTGGATTATCGCGa                                                                                                                                  <  1:3106055/289‑1 (MQ=255)

                                                                                                                                                    cTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCACGTACTGGATGCTTCTGCCGGAAAAGATCAGGCTGCCAACTGGATTATCGCGa                                                                                                                                  <  1:1255904/289‑1 (MQ=255)

                                                                                                                                                          ttAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTAc                                                                                                                                                                                                                   <  1:1198845/202‑1 (MQ=255)

                                                                                                                                                          ttAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCACGTACTGGATGCTTCTGCCGGAAAAGATCAGGCTGCCAACTGGATTATCGCGACCTATc                                                                                                                            <  2:1514525/289‑1 (MQ=255)

                                                                                                                                                            aaaTACGCGACGAGTGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATGGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCACGTACTGGATGCTTCTGCCGGAAAAGATCAGGCTGCCAACTGGATTATCGCGACCTATcaa                                                                                                                          <  2:1824147/289‑1 (MQ=255)

                                                                                                                                                             aatgctacaagcgAGAAAAGACATTTTAAAGTCTAGACTTTTAGAGATGCGGACGATGCACCAATCGCGGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCACGTACTGGATGCTTCTGCCGGAAAAGATCAGGCTGCCAACTGGATTATCGCGACCTATcaac                                                                                                                         <  2:2969878/279‑1 (MQ=255)

                                                                                                                                                              aTACACTACGCGGTAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTACGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCACGTACTGGATGCTTCTGCCGGAAAAGATCAGGCTGCCAACTGGATTATCGCGACCTATcaaca                                                                                                                        <  2:1719016/289‑1 (MQ=255)

                                                                                                                                                                  gctacgcGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGCTTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCACGTACTGGATGCTTCTGCCGGAAAAGATCAGGCTGCCAACTGGATTATCGCGCCCGATCAACAATTg                                                                                                                    >  2:1575525/1‑289 (MQ=255)

                                                                                                                                                                      cgcgAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTgaacgaac                                                                                                                                                                                                                            >  1:342778/1‑181 (MQ=255)

                                                                                                                                                                            aaagaaCATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCACGTACTGGATGCTTCTGCCGGAAAAGATCAGGCTGCCAACTGGATTATCGCGAc                                                                                                                                 >  1:430697/1‑266 (MQ=255)

                                                                                                                                                                             aagaaCATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCCTCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCACGTACTGGATGCTTCTGCCGGAAAAGATCAGGCTGCCAACTGGATTATCGCGACCTATCAACAATTGTCAGGCAAACg                                                                                                         <  2:228909/289‑1 (MQ=255)

                                                                                                                                                                             aagaaCATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCACGTACTGGATGCTTCTGCCGGAAAAGATCAGGCTGCCAACTGGATTATCGCGACCTATCAACAATTGTCAGGCAAACg                                                                                                         <  1:138333/289‑1 (MQ=255)

                                                                                                                                                                                   cttttAAATTCTCGAGTTTTGAGCATTTGGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAGCTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCACGTACTGGATGCTTCTGCCGGAAAAGATCAGGCTGCCAACTGGATTATCGCGACCTATCAACAATTGTCAGGCAAACGCCCAAc                                                                                                   <  2:2098901/288‑1 (MQ=255)

                                                                                                                                                                                     tttAAATTCACGACTTTTGATGATGTCGACGATGCACCCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCACGTACTGGATGCTTCTGCCGGAAAAGATCAGGCTGCCAACTGGATTATCGCGACCTATCAACAATTGTCAGGCAAACGCCCAAc                                                                                                   <  2:1053677/287‑1 (MQ=255)

                                                                                                                                                                                     tttAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCACGTACTGGATGCTTCTGCCGGAAAAGATCAGGCTGCCAACTGGATTATCGCGACCTATCAACAATTGTCAGGCAAACGCCCAAc                                                                                                   >  1:1053677/1‑287 (MQ=255)

                                                                                                                                                                                                            tgTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGTTTCTGGCACGTACTGGATGCTTCTGCCGGAAAAGATCAGGCTGCCAACTGGATTATCGCGACCTATCAACAATTGTCAGGCAAACGCCCAACCACACTTGGCCTGGGCGATGGGCCa                                                                          >  2:413095/1‑289 (MQ=255)

                                                                                                                                                                                                                gacgaTGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCa                                                                                                                                                                                       <  2:926933/176‑1 (MQ=255)

                                                                                                                                                                                                                 acgaTGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCACGTACTGGATGCTTCTGCCGGAAAAGATCAGGCTGCCAACTGGATTATCGCGACCTATCAACAATTGTCAGGCAAACGCCCAACCACACTTGGc                                                                                         >  1:1788326/1‑269 (MQ=255)

                                                                                                                                                                                                                     tGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCACGTACTGGATGCTTCTGCCGGAAAAGATCAGGCTGCCAACTGGATTATcg                                                                                                                                     >  2:3171068/1‑221 (MQ=255)

                                                                                                                                                                                                                     tGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCACGTACTGGATGCTTCTGCCGGAAAAGATCAGGCTGCCAACTGGATTATCGCGACCTATCAACAATTGTCAGGCAAACGCCCAACCACACTTGGCCTGGGCGATGGGCCAAACGATgc                                                                  <  1:1287141/288‑1 (MQ=255)

                                                                                                                                                                                                                     tGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCACGTACTGGATGCTTCTGCCGGAAAAGATCAGGCTGCCAACTGGATTATCGCGACCTATCAACAATTGTCAGGCAAACGCCCAACCACACTTGGCCTGGGCGATGGGCCAAACGATgc                                                                  >  1:1528514/1‑288 (MQ=255)

                                                                                                                                                                                                                       cAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTgaacgaac                                                                                                                                                                                                                            >  2:2520263/1‑132 (MQ=255)

                                                                                                                                                                                                                               gCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCACGTACTGGATGCTTCTGCCGGAAAAGATCAGGCTGCCAACTGGATTATCGCGACCTATCAACAATTGTCAGGCAAACGCCCAACCACACTTGGCCTGGGCGATGGGCCAAACGATGCGCCCTTACTgg                                                       <  2:669021/289‑1 (MQ=255)

                                                                                                                                                                                                                                   aaTGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCtt                                                                                                                                                                                                                     <  1:3273238/127‑1 (MQ=255)

                                                                                                                                                                                                                                    aTGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCACGTACTGGATGCTTCTGCCGGAAAAGATCAGGCTGCCAACTGGATTATcgc                                                                                                                                    <  2:1985171/207‑1 (MQ=255)

                                                                                                                                                                                                                                    aTGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCACGTACTGGATGCTTCTGCCGGAAAAGATCAGGCTGCCAACTGGATTATcgc                                                                                                                                    >  1:1985171/1‑207 (MQ=255)

                                                                                                                                                                                                                                        aCGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGc                                                                                                                                                                                        >  1:795252/1‑151 (MQ=255)

                                                                                                                                                                                                                                         cGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCACGTACTGGATGCTTCTGCCGGAAAAGATCAGGCTGCCAACTGGATTATCGCGACCTATCAACAATTGTCAGGCAAACGCCCAACCACACTTGGCCTGGGCGATGGGCCAAACGATGCGCCCTTACTGGAGGTAATGGa                                             <  1:2866172/289‑1 (MQ=255)

                                                                                                                                                                                                                                          gggATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCACGTACTGGATGCTTCTGCCGGAAAAGATCAGGCTGCCAACTGGATTATCGCGACCTATCAACAATTGTCAGGCAAACGCCCAACCACACTTGGCCTGGGCGATGGGCCAAACGATGCGCCCTTACTGGAGGTAATGGAt                                            <  1:852237/289‑1 (MQ=255)

                                                                                                                                                                                                                                             aTTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCACGTACTGGATGCTTCTGCCGGAAAAGATCAGGCTGCCAACTGGATTATCGCGACCTATCAACAATTGTCAGGCAAACGCCCAACCACACTTGGCCTGGGCGATGGGCCAAACGATGCGCCCTTACTGGAGGTAATGGATTa                                          <  1:2360191/288‑1 (MQ=255)

                                                                                                                                                                                                                                              ttAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGGGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCACGTACTGGATGCTTCTGCCGGAAAAGATCAGGCTGCCAACTGGATTATCGCGACCTATCAACAATTGTCAGGCAAACGCCCAACCACACTTGGCCTGGGCGATGGGCCAAACGATGCGCCCTTACTGGAGGTAATGGATTAcg                                        <  2:2152676/289‑1 (MQ=255)

                                                                                                                                                                                                                                                aggccgaggcacggcgggGCTGAGGCAGCTTCATGGGGGGGCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCACGTACTGGATGCTTCTGCCGGAAAAGATCAGGCTGCCAACTGGATTATCGCGACCTATCAACAATTGTCAGGCAAACGCCCAACCACACTTGGCCTGGGCGATGGGCCAAACGATGCGCCCTTACTGGAGGTAATGGATTAcgcg                                      <  2:2469731/277‑1 (MQ=255)

                                                                                                                                                                                                                                                 aGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCACGTACTGGATGCTTCTGCCGGAAAAGATCAGGCTGCCAACTGGATTATCGCGACCTATCAACAATTGTCAGGCAAACGCCCAACCACACTTGGCCTGGGCGATGGGCCAAACGATGCGCCCTTACTGGAGGTAATGGATTACGCgg                                     >  2:3027869/1‑289 (MQ=255)

                                                                                                                                                                                                                                                      tAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTgcg                                                                                                                                                                                                  >  2:1616458/1‑127 (MQ=255)

                                                                                                                                                                                                                                                      tAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCACGTa                                                                                                                                                                                   >  2:765771/1‑142 (MQ=255)

                                                                                                                                                                                                                                                      tAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCACGTACTGGATGCTTCTGCCGGAAAAGATCAGGCTGCCAACTGGATTATcgc                                                                                                                                    <  2:3276665/189‑1 (MQ=255)

                                                                                                                                                                                                                                                      tAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCACGTACTGGATGCTTCTGCCGGAAAAGATCAGGCTGCCAACTGGATTATCGCGACCTATCAACAATTGTCAGGCAAACGCCCAACCACACTTGGc                                                                                         >  1:2129028/1‑232 (MQ=255)

                                                                                                                                                                                                                                                      tAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCACGTACTGGATGCTTCTGCCGGAAAAGATCAGGCTGCCAACTGGATTATCGCGACCTATCAACAATTGTCAGGCAAACGCCCAACCACACTTGGc                                                                                         >  1:1682563/1‑232 (MQ=255)

                                                                                                                                                                                                                                                      tAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCACGTACTGGATGCTTCTGCCGGAAAAGATCAGGCTGCCAACTGGATTATCGCGACCTATCAACAATTGTCAGGCAAACGCCCAACCACACTTGGCCTGGGCGATGGGCCAAACGATGCGCCCTTACTGGAGGTAATGGATTAcg                                        >  2:289425/1‑281 (MQ=255)

                                                                                                                                                                                                                                                      tAGCCAGGCGGCGCTGACGCAGCTTCACTAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCACGTACTGGATGCTTCTGCCGGAAAAGATCAGGCTGCCAACTGGATTATCGCGACCTATCAACAATTGTCAGGCAAACGCCCAACCACACTTGGCCTGGGCGATGGGCCAAACGATGCGCCCTTACTGGAGGTAATGGATTACGCGGTGAtt                                >  1:2428726/1‑289 (MQ=255)

                                                                                                                                                                                                                                                      gaGCCAGGCGGCGCTGACGCGGCTTCATGGGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCACGTACTGGATGCTTCTGCCGGAAAAGATCAGGCTGCCAACTGGATTATCGCGACCTATCAACAATTGTCAGGCAAACGCCCAACCACACTTGGCCTGGGCGATGGGCCAAACGATGCGCCCTTACTGGAGGTAATGGATTACGCGGTGAt                                 <  2:1728873/287‑1 (MQ=255)

                                                                                                                                                                                                                                                        gCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCACGTACTGGATGCTTCTGCCGGAAAAGATCAGGCTGCCAACTGGATTATCGCGACCTATCAACAATTGTCAGGCAAACGCCCAACCACACTTGGCCTGGGCGATGGGCCAAACGATGCGCCCTTACTGGAGGTAATGGa                                             <  2:1190913/274‑1 (MQ=255)

                                                                                                                                                                                                                                                          cAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGAGTGCGCGCTTCTGGCACGTACTGGATGCTTCTGCCGGAAAAGATCAGGCTGCCAACTGGATTATCGCGACCTATCAACAATTGTCAGGCAAACGCCCAACCACACTTGGCCTGGGCGATGGGCCAAACGATGCGCCCTTACTGGAGGTAATGGATTACGCGGTGATTGTGa                            <  2:356669/289‑1 (MQ=255)

                                                                                                                                                                                                                                                             gcggggCTGACGCAGCTTCATGAGGAGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCACGTACTGGATGCTTCTGCCGGAAAAGATCAGGCTGCCAACTGGATTATCGCGACCTATCAACAATTGTCAGGCAAACGCCCAACCACACTTGGCCTGGGCGATGGGCCAAACGATGCGCCCTTACTGGAGGTAATGGATTACGCGGTGATTGTGaaa                          <  1:250009/288‑1 (MQ=255)

                                                                                                                                                                                                                                                             gcggcgCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCACGTACTGGATGCTTCTGCCGGAAAAGATCAGGCTGCCAACTGGATTATCGCGACCTATCAACAATTGTCAGGCAAACGCCCAACCACACTTGGCCTGGGCGATGGGCCAAACGATGCGCCCTTACt                                                         >  1:3171034/1‑257 (MQ=255)

                                                                                                                                                                                                                                                              cggcgCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCACGTACTGGATGCTTCTGCCGGAAAAGATCAGGCTGCCAACTGGATTATCGCGACCTATCAACAATTGTCAGGCAAACGCCCAACCACACTTGGCCTGGGCGATGGGCCAAACGATGCGCCCTTACTGGAGGTAATGGATTACGCGGTGATTGTGaaa                          <  1:2483329/287‑1 (MQ=255)

                                                                                                                                                                                                                                                                 cgcTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCACGTACTGGATGCTTCTGCCGGAAAAGATCAGGCTGCCAACTGGATTATCGCGACCTATCAACAATTGTCAGGCAAACg                                                                                                         <  1:2942047/205‑1 (MQ=255)

                                                                                                                                                                                                                                                                 cgcTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCACGTACTGGATGCTTCTGCCGGAAAAGATCAGGCTGCCAACTGGATTATCGCGACCTATCAACAATTGTCAGGCAAACGCCCAACCACACTTGGCCTGGGCGATGGGCCAAACGATGCGCCCTTACt                                                         <  2:2818814/253‑1 (MQ=255)

                                                                                                                                                                                                                                                                  gcTGACGCAGCTTCATGGGGCGTCGGTAACGCTAAGCTGGCGCGACAGTGACGGGCGTATGGCACAATTTACCGCTCGTCTGAAAGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCACGTACTGGATGCTTCTGCCGGAAAAGATCAGGCTGCCAACTGGATTATCGCGACCTATCAACAATTGTCAGGCAAACGCCCAACCACACTTGGCCTGGGCGATGGGCCAAACGATGCGCCCTTACTGGAGGTAATGGATTACGCGGTGATTGTGAAAGGGCt                     <  1:2054227/288‑1 (MQ=255)

                                                                                                                                                                                                                                                                  gcTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTCCTGGCACGTACTGGATGCTTCTGCCGGAAAAGATCAGGCTGCCAACTGGATTATCGCGACCTATCAACAATTGTCAGGCAAACGCCCAACCACACTTGGCCTGTGCGATGGGCCAAACGATGCGCCCTTACTGGAGGTAATGGATTACGCGGTGATTGTGAAAGGGCTa                    >  2:2410286/1‑289 (MQ=255)

                                                                                                                                                                                                                                                                          aGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCACGTACTGGATGCTTCTGCCGGAAAAGATCAGGCTGCCAACTGGATTATCGCGACCTATCAACAATTGTCAGGCAAACGCCCAACCACACTTGGCCTGGGCGATGGGCCAAACGATGCGCCCTTACTGGAGGTAATGGATTACGCGGTGATTGTGAAAGGGCTAAATCGTg             <  2:1111148/288‑1 (MQ=255)

                                                                                                                                                                                                                                                                           gCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCACGTACTGGATGCTTCTGCCGGAAAAGATCAGGCTGCCAACTGGa                                                                                                                                           >  2:538510/1‑161 (MQ=255)

                                                                                                                                                                                                                                                                              tCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCtt                                                                                                                                                                                                                     >  2:1491120/1‑84 (MQ=255)

                                                                                                                                                                                                                                                                                     gtatgCGGAACGCTTATGTGGGGAGACAGTGCCGAGCGTATGGCACAAAGTACCGCTCGTCTGCACGAAATGGGCATGCAGTTTATGCAGGGTGGGGGGTTCTGGCACGTACTGGATGAGTCTGCCGGAAAAGATCAGGCTGCCAACTGGATTATCGCGACCTATAAACAATTGTCAGGCAAACGCCCAACCACACTTGGCCTGGGCGATGGGACAAACGCTGCGCCCTTACTGGAGGTAATGGATTACGCGGTGATTGTGAAAGGGCTAAATCGTGAAGGGGTGCAt  <  2:3226819/284‑1 (MQ=255)

|||

GGAAATGCTGTACTTGCAAAAAACGTTGGGGCTACAAGGTTTACCGCTGATTGCCGAAAATGGCGCAGTGATCCAGCTTGCTGAGCAATGGCAGGAGATAGACGGTTTTCCACGCATCATCAGTGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGAGCGTAACGCTAATCTGGCGCGACAGTGACGAGCGTATGGCACAATTTACCGCTCGTCTGAACGAACTGGGCTTACAGTTTATGCAGGGTGCGCGCTTCTGGCACGTACTGGATGCTTCTGCCGGAAAAGATCAGGCTGCCAACTGGATTATCGCGACCTATCAACAATTGAGTGGCAAACGCCCAACCACACTTGGCCTGGGCGATGGGCCAAACGATGCGCCCTTACTGGAGGTAATGGATTACGCGGTGATTGTGAAAGGGCTAAATCGTGAAGGGGTGCAT  >  CP042583/1663133‑1663697

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A