Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F210 I1 R1 4930 262.8 3829204 96.6% 3699011 272.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,558,142 3 bp→TGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,558,1420AT99.0% 449.1 / NA 191intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base A (0/0);  major base T (90/99);  minor base G (1/1);  total (91/100)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-01
*CP0425831,558,1430CG99.0% 433.4 / NA 191intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (1/1);  new base G (90/98);  total (91/100)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01
*CP0425831,558,1440TA99.5% 451.2 / NA 191intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base A (89/100);  minor base G (1/0);  total (91/100)
Fisher's exact test for biased strand distribution p-value = 4.74e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 191 total aligned reads displayed.

AAAACACCACGCAGAACCATGCGCTGGTGCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAATTTGCAATTGTTGCTGACCCCTTGCGCTGTCTGCACTGGAATGAGCGTCCCGCCCTTCTGCTGGCAATAGACGCTC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTACTACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGATGTTTTATCATGCCTGCAAAGATTAAATAATCAGCATTTACCCGCCGTATCCTGGAGTTGTTCCGTGAGTGATCAGATTATCGCCCGCGTCAGCCAATCCCTTGCCAAAG  >  CP042583/1557864‑1558423
                                                                                                                                                                                                                                                                                        |||                                                                                                                                                                                                                                                                                       
       cacGCAGAACCATGCGCTGGTGCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAATTTGCAATTGTTGCTGACCCCTTCCGCTGTCTGCACTGGAATGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATCCCAATCTGCTGCGGTTTAGGTGCTTCTGACT‑GAAGAGGGGTTGAACAACCAGCCAGGa                                                                                                                                                                                                                                                                           >  2:1318345/1‑288 (MQ=255)
               aCCATGCGCTGGTGCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAATTTGCAATTGTTGCTGACCCCTTGCGCTGTCTGCACTGGAATGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCagcaag                                                                                                                                                                                                                                                                   <  1:1754280/288‑1 (MQ=255)
                   tGCGCTGGTGCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAATTTGCAATTGTTGCTGACCCCTTGCGCTGTCTGCACTGGAATGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGcaagcaag                                                                                                                                                                                                                                                               >  2:318801/1‑288 (MQ=255)
                   tGCGCTGGTGCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAATTTGCAATTGTTGCTGACCCCTTGCGCTGTCTGCACTGGAATGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAgg                                                                                                                                                                                                                                                              <  1:1125395/289‑1 (MQ=255)
                    gcgcTGGTGCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAATTTGCAATTGTTGCTGACCCCTTGCGCTGTCTGCACTGGAATGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGc                                                                                                                                                                                                                                                             >  2:1053418/1‑289 (MQ=255)
                        tGGTGCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGTCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAATTTGCAATTGTTGCTGACCCCTTGCGCTGTCTGCACTGGAATGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGa                                                                                                                                                                                                                                                          >  1:1047847/1‑288 (MQ=255)
                        tGGTGCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAATTTGCAATTGTTGCTGACCCCTTGCGCTTTCTGCACTGGAATGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATCTGCCATACCAATCGCCGGCGGTTTAAGTCCTTCTGCCG‑GAGAAGGGTTTGGACAACCAGCCAAGACCAGCCAGCAAGGCAGaa                                                                                                                                                                                                                                                         >  2:459269/1‑289 (MQ=255)
                        tGGTGCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAATTTGCAATTGTTGCTGACCCCTTGCGCTGTCTGCACTGGAATGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGaa                                                                                                                                                                                                                                                         <  1:940439/289‑1 (MQ=255)
                          gTGCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAATTTGCAATTGTTGCTGACCCCTTGCGCTGCCTGCCCTGGAATGAGCGTCCCGCCCTTCTGCTGGCAATAGACTGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGTTTCTGGCT‑GAGAAGGGTTTGAACCAACAGCCAGGACCGGACAGCAAGGCAGAACa                                                                                                                                                                                                                                                       >  2:181241/1‑289 (MQ=255)
                               ggCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAATTTGCAATTGTTGCTGACCCCTTGCGCTGTCTGCACTGGAATGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACaaa                                                                                                                                                                                                                                                     >  1:593852/1‑286 (MQ=255)
                                      tgggtccgtgggttGTGATTTTAGTACAGCATCCGGTGGTTATTTTTCACCAGCCTGATGGTCACGCCGACACAATGCACATTCATCAATGTTTTCACCGACCGTTAATTTGCAATTGTTGCTGACCCCTTGCGCTGTTTGCACTGGAATGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGAGTTGCCATACCATTCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAAtt                                                                                                                                                                                                                                           <  2:1900577/277‑1 (MQ=255)
                                      tGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAATTTGCAATTGTTGCTGACCCCTTGCGCTGTCTGCACTGGAATGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAAtt                                                                                                                                                                                                                                           <  1:761571/289‑1 (MQ=255)
                                      tGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAATTTGCAATTGTTGCTGACCCCTTGCGCTGTCTGCACTGGAATGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAAtt                                                                                                                                                                                                                                           <  1:1819747/289‑1 (MQ=255)
                                        gCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAATTTGCAATTGTTGCTGACCCCTTGCGCTGTCTGCACTGGAATGAGCGTCCCGCCCTTCTGCTGGCAATAGACTGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAAtttt                                                                                                                                                                                                                                         >  2:1189981/1‑289 (MQ=255)
                                          tACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAATTTGCAATTGTTGCTGACCCCTTGCGCTGTCTGCACTGGAATGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTc                                                                                                                                                                                                                                        <  1:1525240/288‑1 (MQ=255)
                                                 cTTGTGATTTTAGTACAGCATCCGGCGTTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAATTTGCAATTGTTGCTGACCCCTTGCGCTGTCTGCACTGGAATGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTAtt                                                                                                                                                                                                                                 <  2:1232399/288‑1 (MQ=255)
                                                  ttGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAATTTGCAATTGTTGCTGACCCCTTGCGCTGTCTGCACTGGAATGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACGAAACTGATAATTTTCATTTATTGa                                                                                                                                                                                                                               >  1:819029/1‑289 (MQ=255)
                                                   tgtgATTTTGTTACAGAAGCCGGTGTTTATTTTTCACCCGCCGGATGGTCACGCCGCCACCATGCACATTCATCAATCGGTTCAGCGCCCGGTAATTTGCAATTGTTGCTGACCCCTTGCGCTGTCTGCACTGGAATGAGCGTCCCGCCCTTCTGATGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATGTTCATTTATTGAt                                                                                                                                                                                                                              <  2:1882567/289‑1 (MQ=255)
                                                   tgtgATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAATTTGCACTTGTTGCTGACCCCTTGCGCTGTCTGCACTGGAATGAGCGTCCCGCCCTTCTCCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGa                                                                                                                                                                                                                               >  1:31360/1‑288 (MQ=255)
                                                            aggagaGCGTCGGGCGGGTATTTTACACCAGCCGGGTGGGCACGCCGGCACAATGCCCATTCATCAATCGTTTCACCGCCCGGGAAGTTGCAATTGTTGCTGACCCCGTGCGCTGTCTGCACTGGAATGGGCGTCCCGCCCTTCTGCTGGCAAGAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACatat                                                                                                                                                                                                                     <  2:1086457/284‑1 (MQ=255)
                                                            aGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAATTTGCAATTGTTGCTGACCCCTTGCGCTGTCTGCACTGGAATGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACatat                                                                                                                                                                                                                     >  1:852182/1‑289 (MQ=255)
                                                            aGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAATTTGCAATTGTTGCTGACCCCTTGCGCTGTCTGCACTGGAATGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACAAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACatat                                                                                                                                                                                                                     <  1:1631650/289‑1 (MQ=255)
                                                                   cATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAATTTGCAATTGTTGCTGACCCCTTGCGCTGTCTGCACTGGAATGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCa                                                                                                                                                                                                              >  2:772699/1‑289 (MQ=255)
                                                                   cATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCAACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAATTTGCAATTGTTGCTGACTCTTTGCGCTGTCTGCACTGGAATGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGTCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCAAATATTTATCCa                                                                                                                                                                                                              >  1:1887437/1‑289 (MQ=255)
                                                                    aTCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAATTTGCAATTGTTGCTGACCCCTTGCGCTGTCTGCACTGGAATGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATc                                                                                                                                                                                                                <  1:278188/286‑1 (MQ=255)
                                                                    aTCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCAGCAATCGTTTCACCGCCCGGTAAGTTGCAATTGTTGCTGACCCCTTGCGCTGTCTGCACTGGAATGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGGTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATcc                                                                                                                                                                                                               <  2:1821569/287‑1 (MQ=255)
                                                                       cggcggTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAATTTGCAATTGTTGCTGACCCCTTGCGCTGTCTGCACTGGAATGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGAt                                                                                                                                                                                                          <  1:869312/289‑1 (MQ=255)
                                                                                           ccGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAATTTGCAATTGTTGCTGACCCCTTGCGCTGTCTGCACTGGAATGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCgtt                                                                                                                                                                                      >  2:1568179/1‑289 (MQ=255)
                                                                                                    cACGCCGCCCCAATGCCCATTCATCAATCGTTTCACCGCCCGGTAATTTGCCATTGTTGCTGACCCCTTGCGCTGTCTGCACTGGAATGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGttttgttttg                                                                                                                                                                              <  2:334303/288‑1 (MQ=255)
                                                                                                     aCGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAATTTGCAATTGTTGCTGACCCCTTGCGCTGTCTGCACTGGAATGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCCGTTTAGGTGCTTCTGGCT‑GAGACGGGGTTGAACAACCAGCCAGGACTAGCAAGCACGGCAGAGCACAACCGATAATTTTCATTTATTGATCTCATATATTTATTCAAGATTAGCGTACCGCGGTATCGTTTTGTTTTgca                                                                                                                                                                            >  2:1711083/1‑289 (MQ=255)
                                                                                                      cgccgcCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAATTTGCAATTGTTGCTGACCCCTTGCGCTGTCTGCACTGGAATGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTgcag                                                                                                                                                                           <  1:176856/289‑1 (MQ=255)
                                                                                                            cccaATGCCCATTCATCAATCGTTTCACCGCCCGGTAATTTGCAATTGTTGCTGACCCCTTGCGCTGTCTGCACTGGAATGCGCGTCCCGCCCTTCTGCTGGCAATAGACCGTC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGACTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTAt                                                                                                                                                                     <  1:1111586/287‑1 (MQ=255)
                                                                                                            cacaATGCCCATTCATCAATCGTTTCACCGCCCGGTAATTTGCAATTGTTGCTGACCCCTTGCGCTGTCTGCACTGGAATGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTAt                                                                                                                                                                     <  2:595904/289‑1 (MQ=255)
                                                                                                            cacaATGCCCATTCATCAATCGTTTCACCGCCCGGTAATTTGCAATTGTTGCTGACCCCTTGCGCTGTCTGCACTGGAATGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATATCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTAt                                                                                                                                                                     >  1:647594/1‑289 (MQ=255)
                                                                                                                 tGCCCATTCATCAATCGTTTCACCGCCCGGTAATTTGCAATTGTTGCTGACCCCTTGCGCTGTCTGCACTGGAATGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTtta                                                                                                                                                                >  1:149315/1‑289 (MQ=255)
                                                                                                                  gCCCATTCATCAATCGTTTCACCGCCCGGTAATTTGCAATTGTTGCTGACCCCTTGCGCTGTCTGCACTGGAATGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTttat                                                                                                                                                               <  1:1751669/289‑1 (MQ=255)
                                                                                                                     cATTCATCAATCGTTTCACCGCCCGGTAATTTGCAATTGTTGCTGACCCCTTGCGCTGTCTGCACTGGAATGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTa                                                                                                                                                                                           <  2:129248/258‑1 (MQ=255)
                                                                                                                     cATTCATCAATCGTTTCACCGCCCGGTAATTTGCAATTGTTGCTGACCCCTTGCGCTGTCTGCACTGGAATGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTa                                                                                                                                                                                           >  1:129248/1‑258 (MQ=255)
                                                                                                                      aTTCATCAATCGTTTCACCGCCCGGTAATTTGCAATTGTTGCTGACCCCTTGCGCTGTCTGCACTGGAATGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACa                                                                                                                                                           >  2:516123/1‑289 (MQ=255)
                                                                                                                      aTTCATCAATCGTTTCACCGCCCGGTAATTTGCAATTGTTGCTGACCCCTTGCGCTGTCTGCACTGGAATGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTAACATATTTAACAAAAATTAGATTATCACGGTATCGATTTGTTTTTAAGCACTATTTTTATTACa                                                                                                                                                           >  2:615423/1‑289 (MQ=255)
                                                                                                                       ttCATCAATCGTTTCACCGCCCGGTAATTTGCAATTGTTGCTGACCCCTTGCGCTGTCTGCACTGGAATGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAAAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACAt                                                                                                                                                          <  2:306677/289‑1 (MQ=255)
                                                                                                                            caATGGTTGCACCGCCCGGTAATTTGCAATTGTTGCTGACCCCTTGCGCTGTCTGCACTGGAATGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACt                                                                                                                                                     <  2:152202/289‑1 (MQ=255)
                                                                                                                               tCGTTTCACCGCCCGGTAATTTGCAATTGTTGCTGACCCCTTGCGCTGTCTGCACTGGAATGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCaa                                                                                                                                                  <  1:1303879/289‑1 (MQ=255)
                                                                                                                                cGTTTCACCGCCCGGTAATTTGCAATTGTTGCTGACCCCTTGCGCTGTCTGCACTGGAATGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCaaa                                                                                                                                                 <  2:588502/289‑1 (MQ=255)
                                                                                                                                 gTTTCACCGCCCGGTAATTTGCAATTGTTGCTGACCCCTTGCGCTGTCTGCACTGGAATGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTgcagca                                                                                                                                                                         >  1:238706/1‑264 (MQ=255)
                                                                                                                                  tttCACCGCCCGGTAATTTGCAATTGTTGCTGACCCCTTGCGCTGTCTGCACTGGAATGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTa                                                                                                                                                                                           <  1:1684754/245‑1 (MQ=255)
                                                                                                                                       ccGCCCGGTAATTTGCAATTGTTGCTGACCCCTTGCGCTGTCTGCACTGGAATGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATAtt                                                                                                                                          <  2:802025/289‑1 (MQ=255)
                                                                                                                                           ccGGTAATTTGCCATTGTGGCTGCCCCCTTGCGCTGTCTGCACTGGAATGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGt                                                                                                                                      <  2:1570730/289‑1 (MQ=255)
                                                                                                                                                                tGACCCCTTGCGCTGTCTGCACTGGAATGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTtgatg                                                                                                                 <  1:36750/289‑1 (MQ=255)
                                                                                                                                                                tGACCCCTTGCGCTGTCTGCACTGGAATGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTtgatg                                                                                                                 <  1:1899444/289‑1 (MQ=255)
                                                                                                                                                                       ttGCGCTGTCTGCACTGGAATGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTCTCGTTTTGTTTTGCAGCCCTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGATGtttt                                                                                                          >  2:1359218/1‑289 (MQ=255)
                                                                                                                                                                       ttGCGCTGTCTGCACTGGAATGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTtgatg                                                                                                                 <  1:126167/282‑1 (MQ=255)
                                                                                                                                                                       ttGCGCTGTCTGCACTGGAATGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTtgatg                                                                                                                 >  2:126167/1‑282 (MQ=255)
                                                                                                                                                                       ttGCGCTGTCTGCACTGGAATGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGATGtttt                                                                                                          >  1:1671725/1‑289 (MQ=255)
                                                                                                                                                                        tGCGCTGTCTGCACTGGAATGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGATTTTTTa                                                                                                         >  2:578559/1‑289 (MQ=255)
                                                                                                                                                                        tGCGCTGTCTGCACTGGAATGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGATGTTTTa                                                                                                         >  1:69505/1‑289 (MQ=255)
                                                                                                                                                                         gcgcTGTCTGCACTGGAATGAGCGTCCCGCCCTTCTGCTGGAAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGATGTTTTAt                                                                                                        <  2:647479/289‑1 (MQ=255)
                                                                                                                                                                           gcTGTCTGCACTGGAATGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGATGTTTTATCa                                                                                                      <  1:1568179/289‑1 (MQ=255)
                                                                                                                                                                            cTGTCTGCACTGGAATGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGAt                                                                                                                                                                                                                              >  1:1277164/1‑168 (MQ=255)
                                                                                                                                                                                 tGCACTGGAATGAGCGTCCCGCCCTTCTGCTGGCAATAGACTGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTA‑TTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGATGTTTTATCATGCCTGc                                                                                               <  1:1189981/289‑1 (MQ=255)
                                                                                                                                                                                 tGCACTGGAATGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTTTTTCCTCTTGTTTTATGATGTTTTATCATGCCt                                                                                                 >  2:858250/1‑288 (MQ=255)
                                                                                                                                                                                    acgggAATGGCCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGATGTTTTATCATGCCTGCaa                                                                                             <  2:728590/286‑1 (MQ=255)
                                                                                                                                                                                    aatGGAATGAGCGTCCCGCCCCTCTGCCGGGTATAGACCAGCGGCGGGATTTG‑CATAACCATCTGCGGCGGTTTAGGTGGCTCTGGCTGGGGAAGGGGTTCAAC‑ACCAGCCAGGACCAGCAAGCAAAGCAAAAAAAAAATGATAATTTTTATTTTTTGGTTTTACCTTATTATTCAAGATTTGGGGATCGCGGTATCGTTTTGTTTTGGAGGACTAGTTTTAATACATTTACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGATGTTTTATCATGCCTGCa                                                                                              <  2:1240528/286‑1 (MQ=255)
                                                                                                                                                                                    aCTGGAATGAGCGTCCCGCCCTTCTGCTTGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGATGTTTTATCATGCCTGCa                                                                                              <  1:132350/288‑1 (MQ=255)
                                                                                                                                                                                       ggAATGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGATGTTTTATCATGCCTGCaaata                                                                                          >  2:1421430/1‑287 (MQ=255)
                                                                                                                                                                                         aaTGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTa                                                                                                                                                                                                                                   <  1:549292/150‑1 (MQ=255)
                                                                                                                                                                                         aaTGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTa                                                                                                                                                                                                                                   >  2:549292/1‑150 (MQ=255)
                                                                                                                                                                                         aaTGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTgcagca                                                                                                                                                                         >  1:734804/1‑208 (MQ=255)
                                                                                                                                                                                         aaTGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACAtt                                                                                                                                                         <  2:323444/224‑1 (MQ=255)
                                                                                                                                                                                         aaTGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACAtt                                                                                                                                                         >  1:323444/1‑224 (MQ=255)
                                                                                                                                                                                         aaTGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGATGTTTTATCATGCCTGCAAAGAtt                                                                                        >  2:70996/1‑289 (MQ=255)
                                                                                                                                                                                         aaTGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGATGTTTTATCATGCCTGCAAAGAtt                                                                                        >  2:1760484/1‑289 (MQ=255)
                                                                                                                                                                                           tGAGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGATGTTTTATCATGCCTGCAAAGATTaa                                                                                      <  1:772699/289‑1 (MQ=255)
                                                                                                                                                                                             aGCGTCCCGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGATGTTTTATCATTCCTGCAAAGATTAaat                                                                                    >  2:570049/1‑289 (MQ=255)
                                                                                                                                                                                                  cccGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAACACTGAGAATTTTCATTTATTGATCTCACATATTGATCCAAGATTAGAGCATCGAGGTAGCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTTATGATGTTTTTTCATTCCTTCAAAGTTTAAATAATCa                                                                               >  2:209598/1‑289 (MQ=255)
                                                                                                                                                                                                  cccGCCCTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGATGTTTTATCATGCCTGCAAAGATTAAATAATCa                                                                               >  1:1449140/1‑289 (MQ=255)
                                                                                                                                                                                                     gCCCTGCTGCTGGCAATGTACCGAA‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGATGTTTTATCATGCCTGCAAAGATTAAATAATCAGCa                                                                            <  2:1676711/289‑1 (MQ=255)
                                                                                                                                                                                                       ccTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTtga                                                                                                                   <  2:608355/248‑1 (MQ=255)
                                                                                                                                                                                                       ccTTCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTtga                                                                                                                   >  1:608355/1‑248 (MQ=255)
                                                                                                                                                                                                          tCTGTTGGCAATAAACCGAC‑CCCGGATTTGCCATACAAACCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAAGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAAAAAAATTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGATGTTTTATCATGCCTGCAAAGATTAAATAATCAGCATTTAc                                                                       <  2:818226/289‑1 (MQ=255)
                                                                                                                                                                                                          tCTGCTGGCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGAAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGATGTTTTATCATGCCTGCAAAGATTAAATAATCGGCATTTAc                                                                       <  2:1386262/289‑1 (MQ=255)
                                                                                                                                                                                                                 gCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACt                                                                                                                                                     <  1:1551167/204‑1 (MQ=255)
                                                                                                                                                                                                                 gCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGATGTTTTATCATGCCTGCAAAGATTAAATAATCAGCATTTACccgccg                                                                 <  1:783180/288‑1 (MQ=255)
                                                                                                                                                                                                                 gCAATAGACCGAC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGATGTTTTATCATGCCTGCAAAGATTAAATAATCAGCATTTACccgccg                                                                 <  1:1349507/288‑1 (MQ=255)
                                                                                                                                                                                                                  gaaatagaccgaccccGGATTGGCCATACAAATCTGGGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGTAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGATGTTTTATCATGCCTGCAAAGATTAAATAATCAGCATTTACccgccg                                                                 <  2:852182/274‑1 (MQ=255)
                                                                                                                                                                                                                   aaatagcgcgatgCCGGATTGGCCAGACCATCTTGGGGCGGTTGAGGTGCTGCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTAATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGTTTTCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGATGTTTTATCATGCCTGCAAAGATTAAATAATCAGCATTTACccg                                                                    <  2:1394413/272‑1 (MQ=255)
                                                                                                                                                                                                                         ccagc‑GCCGGATTGGCCAGACCAATCGGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTGAAACAACCAGCCAGGACCAGCAAGAAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACTTCTTGTTTCATCTTTGTTGATGATGTTTTATCATGCCTGCAAAGATTAAATAATCAGCATTTACCCGCCGTATcc                                                            <  1:44173/281‑1 (MQ=255)
                                                                                                                                                                                                                             c‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGATGTTTTATCATGCCTGCAAAGATTAAATAATCAGCATTTACCCGCCGTATCCTGGAgttg                                                    <  1:516123/289‑1 (MQ=255)
                                                                                                                                                                                                                                 cGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGAAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAACCATATTACGTCTTGTTTCATCTTTGTTGATGATGTTTTATCATGCCTGCAAAGATTAAATAATCAGCATTTACCCGCCGTATCCTGGAGTTGTTc                                                 <  1:573366/289‑1 (MQ=255)
                                                                                                                                                                                                                                         ccATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGATGTTTTATCATGCCTGCAAAGATTAAATAATCAGCATTTACCCGCCGTATCCTGGAGTTGTTCCgtgtcag                                         >  1:1588379/1‑285 (MQ=255)
                                                                                                                                                                                                                                             aCCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGATGTTTTATCATGCCTGCAAAGATTAAATAATCAGCATTTACCCGCCGTATCCTGGAGTTGTTCCgtgtcagatca                                     >  2:677550/1‑281 (MQ=255)
                                                                                                                                                                                                                                                  tCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGATGTTTTATCATGCCTGCAAAGATTAATTAATCAGCATTTACTCGCCGGATCCTGGAGTTGTTCGGTGTCAGATAAGATTa                                >  2:908762/1‑289 (MQ=255)
                                                                                                                                                                                                                                                            tttAGGTGCTTCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGATGTTTTATCATGCCTGCAAAGATTAAATAATCAGCATTTACCCGCCGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCcgcg                       <  1:487635/288‑1 (MQ=255)
                                                                                                                                                                                                                                                                     ttCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTtgatg                                                                                                                 >  2:1335437/1‑189 (MQ=255)
                                                                                                                                                                                                                                                                     ttCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTtgatg                                                                                                                 <  1:1335437/189‑1 (MQ=255)
                                                                                                                                                                                                                                                                     ttCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGGTGATGTTTTATCATGCCTGCAAAGATTAAATAATCAGCATTTACCCGCCGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTctcgcaat              >  2:1009244/1‑281 (MQ=255)
                                                                                                                                                                                                                                                                      tCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTTTTGATGATGTTTTATCATGCCTGCAAAGATTAAATAATCAGCATTTACCCGCCGTATCCTGGAGTTGTTCCGTTTCAGATCAGATTATCGCCCGCGTCTCCCaacc             >  2:1200459/1‑286 (MQ=255)
                                                                                                                                                                                                                                                                      tCTGGCT‑GAGAAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGATGTTTTATCATGCCTGCAAAGATTAAATAATCAGCATTTACCCGCCGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTctcgcaatc             >  1:1220737/1‑280 (MQ=255)
                                                                                                                                                                                                                                                                                gaAGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGATGTTTTATCATGCCTGCAAAGATTAAATAATCAGCATTTACCCGCCGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCaaa   >  1:1040662/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                                 aaGGGGTTGAACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCTAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGATGTTTTATCATGCCTGCAAAGATTAAATAATCAGCATTTACCCGCCGTAGCCTGGAGTTGTTCCGTGTCAGATCGTAATATCCGCCGCGTCTCGCAATTTCTTTCCAAAg  >  2:432379/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                                        |||                                                                                                                                                                                                                                                                                       
AAAACACCACGCAGAACCATGCGCTGGTGCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAATTTGCAATTGTTGCTGACCCCTTGCGCTGTCTGCACTGGAATGAGCGTCCCGCCCTTCTGCTGGCAATAGACGCTC‑GCCGGATTTGCCATACCAATCTGCGGCGGTTTAGGTGCTTCTGGCT‑GAGAAGGGGTACTACAACCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGATGTTTTATCATGCCTGCAAAGATTAAATAATCAGCATTTACCCGCCGTATCCTGGAGTTGTTCCGTGAGTGATCAGATTATCGCCCGCGTCAGCCAATCCCTTGCCAAAG  >  CP042583/1557864‑1558423

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A