Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F210 I1 R1 4930 262.8 3829204 96.6% 3699011 272.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,558,429 3 bp→TCA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,558,4290AT100.0% 487.1 / NA 203intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base T (119/84);  total (119/84)
*CP0425831,558,4300GC99.5% 483.4 / NA 203intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/0);  major base C (118/84);  minor base A (1/0);  total (119/84)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,558,4310TA99.5% 478.1 / NA 203intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base A (118/84);  minor base C (1/0);  total (119/84)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01

Only 100 of 203 total aligned reads displayed.

CCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGA‑TGTTTTATCATGCCTGCAAAGATTAAATAATCA‑GCATTTACCCGCCGTATCCTGGAGTTGTTCCGTGAGTGATCAGATTATCGCCCGCGTCAGCCAATCCCTTGCCAAAGAACAGAGTCTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAAAGTACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTGCAGCATATTATGTTTGCCCGTAACAGCCAGAAAATGTACATCCCGGAGAATTTTACCGTCAGCTGGGATTACAGCTTATGCAAACGCGC‑CATTGATGAAAACTGCTTTTTCA‑GCGATGAAGTCCCCGACCGTTGGGGTGACTGTATTGCGGCACGCAATCTTGGCATCACCACATTTCTGAG  >  CP042583/1558149‑1558709
                                                                                                                                                                                                                                                                                          |||                                                                                                                                                                                                                                                                                        
ccagccagGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGA‑TGTTTTATCATGCCTGCAAAGATTAAATAATCA‑GCATTTACCCGCCGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGaa                                                                                                                                                                                                                                                                                    >  1:1854898/1‑289 (MQ=255)
ccagccagGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGA‑TGTTTTATCATGCCTGCAAAGATTAAATAATCA‑GCATTTACCCGCCGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGaa                                                                                                                                                                                                                                                                                    >  1:991124/1‑289 (MQ=255)
ccagccagGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGA‑TGTTTTATCATGCCTGCAAAGATTAAATAATCA‑GCATTTACCCGCCGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGaa                                                                                                                                                                                                                                                                                    >  1:1371568/1‑289 (MQ=255)
    ccagGACACACAATCAAGGAAGAAACATACTTATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGATTATCGCGTTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGA‑TGTTTTATCATGCCTGCAAAGATTAAATAATCA‑GCATTTACCCGCTGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAAAACAGTCACTGGAAAGTc                                                                                                                                                                                                                                                                                <  1:1307417/289‑1 (MQ=255)
     aggaaCCAGAAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGA‑TGTTTTATCATGCCTGCAAAGATTAAATAATCA‑GCATTTACCCGCCGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAg                                                                                                                                                                                                                                                                                  <  1:903679/282‑1 (MQ=255)
           acgaaacaaagcaaGAACAAAATTTATAATTTTCATTTATTGATTTGATAATTGTATCCAAGTTTGGAGTATTGCGGTTTCGTTTTTTTTTGCAGGACTTTTTTTATTACATCCTCCCAAACCATATTACGTTTTGTTTCATCTTGTTTGATGA‑TGTTTTAGCTGGCCGGCAAGGATTAAATAATCG‑GCATTTACCCGCCGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCg                                                                                                                                                                                                                                                                         <  2:1140754/276‑1 (MQ=255)
             gcaagcaaGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGA‑TGTTTTATCATGCCTGCAAAGATTAAATAATCA‑GCATTTACCCGCCGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGAc                                                                                                                                                                                                                                                                       >  1:1781293/1‑289 (MQ=255)
              caagcaagGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGA‑TGTTTTATCATGCCTGCAAAGATTAAATAATCA‑GCATTTACCCGCCGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACa                                                                                                                                                                                                                                                                      >  2:1798749/1‑289 (MQ=255)
               aagcaagGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGA‑TGTTTTATCATGCCTGCAAAGATTAAATAATCA‑GCATTTACCCGCCGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGAc                                                                                                                                                                                                                                                                       <  2:1449140/287‑1 (MQ=255)
               aagcaacGCAAAACAAAACTGATAATTTTCATTTTTTGATCTCACATTTTTATCCAAGATTAGAGTATCGCGTTATCTTTTTGTTTTGCAGCACTTTTTTTTTTAAATTCCCTCAAAACATTTTCCTTCTTTTTTCATTTTTGTTGATGA‑TGTTTTATCATGCCTGCAAAGATTAAATAATCA‑GCATTTACCCGCCGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGAc                                                                                                                                                                                                                                                                       <  2:1254187/287‑1 (MQ=255)
                                      aaTTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTTTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGA‑TGTTTTATCATGCCTGCAAAGATTAAATAATCA‑GCATTTACCCGCCGTATCCTGGAGTTGTTGCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGt                                                                                                                                                                                                                                              <  1:12163/289‑1 (MQ=255)
                                         tttCATTTATTTATCTCACATTTTTATCCAATATTAGGGTATCGCGTTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTTTTTCCTCTTTTTTGATGA‑TGTTTTATCATGCCTGCAAAGATTAAATAATCA‑GCATTTACCCGCCGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCAc                                                                                                                                                                                                                                           <  1:498678/289‑1 (MQ=255)
                                                                    ccAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGA‑TGTTTTATCATGCCTGCAAAGATTAAATAATCA‑GCATTTACCCGCCGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGt                                                                                                                                                                                                                                              <  1:784624/259‑1 (MQ=255)
                                                                        gATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGA‑TGTTTTTTCATGCCTGCAAAGATTAAATAATCA‑GCATTTACCCGCCGTATCCTGGAGTTGTTACGTGTCAGATCAGATTCTCGCCCTCGTCTCGCAATCCCTTGCCAAAGAACAGTAACTGGAAGGTCTGGTCTGCCAGTTTGTGGCGCTGATGGAAATGGTCACTGATATGCACTCAACCTACTTGACCAAAGTg                                                                                                                                                                                                            >  2:1410412/1‑289 (MQ=255)
                                                                        gATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGA‑TGTTTTATCATGCCTGCAAAGATTAAATAATCA‑GCATTTACCCGCCGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTTACCAAAggg                                                                                                                                                                                                            >  2:1818935/1‑287 (MQ=255)
                                                                                  tCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGA‑TGTTTTATCATGCCTGCAAAGATTAAATAATCA‑GCATTTACCCGCCGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGaa                                                                                                                                                                                                   >  1:1293049/1‑288 (MQ=255)
                                                                                   cgcgGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGA‑TGTTTTATCATGCCTGCAAAGATTAAATAATCA‑GCATTTACCCGCCGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAgc                                                                                                                                                                                                 >  1:1890892/1‑289 (MQ=255)
                                                                                   cgcgGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGA‑TGTTTTATCATGCCTGCAAAGATTAAATAATCA‑GCATTTACCCGCCGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAgc                                                                                                                                                                                                 >  1:674183/1‑289 (MQ=255)
                                                                                   cgcgGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGA‑TGTTTTATCATGCCTGCAAAGATTAAATAATCA‑GCATTTACCCGCCGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCCCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACATACCTGACCAAAGTGGAGGTCGAAgg                                                                                                                                                                                                 >  2:714355/1‑288 (MQ=255)
                                                                                       gtttgtttttgttttcAAGCTATATTTTTATGACATTCACTCAAAAAATCTTTCTTCTTTTTTCTTCTTTGTTGTTGA‑TGTTTTATCATGCCTGCAAAGATTAAATAAGCA‑GCATTTCCCCGCCGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAgcgcgc                                                                                                                                                                                             <  2:1277764/283‑1 (MQ=255)
                                                                                         aTCTTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGA‑TGTTTTATCATGCCTGCAAAGATTAAATAATCA‑GCATTTACCCGCCGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACAGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCt                                                                                                                                                                                           <  1:518098/289‑1 (MQ=255)
                                                                                          tCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGA‑TGTTTTATCATGCCTGCAAAGATTAAATAATCA‑GCATTTACCCGCCGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCt                                                                                                                                                                                           >  2:1497883/1‑288 (MQ=255)
                                                                                          tCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGA‑TGTTTTATCATGCCTGCAAAGATTAAATAATCA‑GCATTTACCCGCCGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAAGGGATGTCGAAGCGCACCt                                                                                                                                                                                           >  2:1860828/1‑288 (MQ=255)
                                                                                           cGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGA‑TGTTTTATCATGCCTGCAAAGATTAAATAATCA‑GCATTTACCCGCCGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTgc                                                                                                                                                                                         <  1:458506/289‑1 (MQ=255)
                                                                                            tttttgttttgCACTAATATTTTTTTTACATTAACTCAAAACATATTCGTTTTTTTTTTCTCTTTTTTGTTGA‑TGTTTTATATTCCCTGAAAAGTTTAAATAATCG‑GCTTTTACCCGCCGTATCCGGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTgca                                                                                                                                                                                        <  1:1819705/288‑1 (MQ=255)
                                                                                            gtttttttttGCAGCATTATTTTTATTACATTCACTCAAAACATATTACGTCTTTTTTCATCTTTGTTGATGA‑TGTTTTATCATGCCTGCAAAGATTAAATAATCA‑GCATTTACCCGCCGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTgca                                                                                                                                                                                        <  1:1200459/289‑1 (MQ=255)
                                                                                            gttttgttttGCATCACTATTTTTTTTCCTTTCCCTCAAATCATTTTGCGTCTTGTTTAATCTTTGTTGGTGA‑TGTTTTATCATGACTGCAAAGATTAAATAATCA‑GCATTTACCCGCCGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTgca                                                                                                                                                                                        <  1:209598/289‑1 (MQ=255)
                                                                                            gttttgttttGCAGCATTATTTTTATTACATTCCCTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGA‑TGTTTTAGCATGCCTGAAAAGATTAAATAATCA‑GCATTTACCCGCCGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTgca                                                                                                                                                                                        <  1:682237/289‑1 (MQ=255)
                                                                                            gttttgttttGCAGCATTATTTTTATTACATTCACTCAAAACATATTACGTCTTTTTTCATCTTTGTTGATGA‑TGTTTTATCATGCCTGCAAAAATTAAATAATCA‑GCATTTACCCGCCGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTgca                                                                                                                                                                                        <  1:1711083/289‑1 (MQ=255)
                                                                                                  ttttgCAGCACTATTTTTATTACCTTCACAAAAAACAAATTACGTCTTGTTTCATCTTTGTTGATGA‑TGTTTTATAATGCCTGAAAAGATTAACTAATCA‑GCATTTACCCGCCGTATCCGGGAGTTGTTCCGTGTCAGATCACTTTATCGCCCGCGTCTCGCAATCCCTGGTCAAAGAACAGTCACTGGAAAGTCTGGCCCGACAGCCTCGGGAGATGCTGGAAACGGTGACTGACAGGAGATCAACTTACCTTACCAAGGCGGAAGTCGATGCGCGTCtcaacaatat                                                                                                                                                                                  >  2:680075/1‑280 (MQ=255)
                                                                                                       cagcaCTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGA‑TGTTTTATCATGCCTGCAAAGATTAAATAATCA‑GCATTTACCCGCCGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTgca                                                                                                                                                                                        <  1:1363098/278‑1 (MQ=255)
                                                                                                               tttttATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGA‑TGTTTTATCATGCCTGCAAAGATTAAATAATCA‑GCATTTACCCGCCGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGTAAATGGTCACTGTTATGGAATCAACCTACCTGACCAAAGTGGATGTTGAAGCGCGCCTGCAGCCTATTATGTTTTCCCGt                                                                                                                                                                     >  2:1350174/1‑289 (MQ=255)
                                                                                                                    attaCATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGA‑TGTTTTATCATGCCTGCAAAGATTAAATAATCA‑GCATTTACCCGCCGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGa                                                                                                                                                                                                                                  >  2:1069992/1‑223 (MQ=255)
                                                                                                                    attaCATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGA‑TGTTTTATCATGCCTGCAAAGATTAAATAATCA‑GCATTTACCCGCCGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGa                                                                                                                                                                                                                                  <  1:1069992/223‑1 (MQ=255)
                                                                                                                       aCATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGA‑TGTTTTATCATGCCTGCAAAGATTAAATAATCA‑GCATTTACCCGCCGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGaa                                                                                                                                                                                                                                 >  1:1656662/1‑221 (MQ=255)
                                                                                                                         aTTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGA‑TGTTTTATCATGCCTGCAAAGATTAAATAATCA‑GCATTTACCCGCCGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGt                                                                                                                                                                                                                                              >  2:149114/1‑206 (MQ=255)
                                                                                                                         aTTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGA‑TGTTTTATCATGCCTGCAAAGATTAAATAATCA‑GCATTTACCCGCCGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTgca                                                                                                                                                                                        <  1:1002049/260‑1 (MQ=255)
                                                                                                                         aTTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGA‑TGTTTTATCATGCCTGCAAAGATTAAATAATCA‑GCATTTACCCGCCGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTGCAGCATATTATGTTTGCCCGTAACAGCCAGa                                                                                                                                                           >  2:964428/1‑289 (MQ=255)
                                                                                                                         aTTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGA‑TGTTTTATCATGCCTGCAAAGATTAAATAATCA‑GCATTTACCCGCCGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCGGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTGCAGCATATTATGTTTGCCCGTAACAGCCAGa                                                                                                                                                           >  2:479103/1‑289 (MQ=255)
                                                                                                                             aCTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGA‑TGTTTTATCATGCCTGCAAAGATTAAATAATCA‑GCATTTACCCGCCGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTGCAGCATATTATGTTTGCCCGTAACAGCCAGAAAAt                                                                                                                                                       >  1:134838/1‑289 (MQ=255)
                                                                                                                                  aaaCATATTACGTCTTTTTTCATCTTTGTTGATGA‑TGTTTTATCATGCCTGCAAAGATTAAATAATCA‑GCATTTACCCGCCGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTGCAGCATATTATGTTTGCCCGTAACAGCCAGAAAATGTACa                                                                                                                                                  <  1:964428/289‑1 (MQ=255)
                                                                                                                                         ttACGTCTTGTTTCATCTTTGTTGATGC‑TGTTTTATCATGCCTGCAAAGATTAAATAATCA‑GCATTTACCCGCCGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACCGTCACTAGAAAGTCTGGTCCGACAGCCTCCGGAGATGCTGGAAAATGTCACTGATTTGGAATCAACCTACCTGCAAAAAGTTGATGTCGAAGCGCGCCTGCTGCATAGTCAGCTCGCCCGTAACAGCCAGACAACATACATCCCGga                                                                                                                                           >  2:1311216/1‑289 (MQ=255)
                                                                                                                                             atcgtGTTTCATCTGTGTTGATGAGGGTTTTATCTAGCCTGAAGACA‑TGAATAAACAGGCTTTTCGCGGCCGTATCCTGGAGTTGTTCAGTGTGAGAGCAGATTATCGCCGGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGGCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTGCAGCATATTATGTTTGCCCGTAACAGCCAGAAAATGTACATCCCGGAGaa                                                                                                                                        <  2:1765193/285‑1 (MQ=255)
                                                                                                                                               cTTGTTTCATCTTTGTTGATGA‑TGTTTTATCATGCCTGCAAAGATTAAATAATCA‑GCATTTACCCGCCGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTGCAGCATATTATGTTTGCCCGTAACAGCCAGAAAATGTACATCCCGGAGAAttt                                                                                                                                     >  1:1036812/1‑289 (MQ=255)
                                                                                                                                               cTTGTTTCATCTTTGTTGATGA‑TGTTTTATCATGCCTGCAAAGATTAAATAATCA‑GCATTTACCCGCCGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTGCAGCATATTATGTTTGCCCGTAACAGCCAGAAAATGTACATCCCGGAGAAttt                                                                                                                                     >  1:693069/1‑289 (MQ=255)
                                                                                                                                                ttGTTTCATCTTTGTTGATGA‑TGTTTTATCATGCCTGCAAAGATTAAATAATCA‑GCATTTACCCGCCGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTGCAGCATATTATGTTTGCCCGTAACAGCCAGAAAATGTACATCCCGGAGACtttt                                                                                                                                    >  1:307741/1‑289 (MQ=255)
                                                                                                                                                ttGTTTCATCTTTGTTGATGA‑TGTTTTATCATGCCTGCAAAGATTAAATAATCA‑GCATTTACCCGCCGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTGCAGCATATTATGTTTGCCCGTAACAGCCAGAAAATGTACATCCCGGAGAAtttt                                                                                                                                    >  1:1132881/1‑289 (MQ=255)
                                                                                                                                                  gTTTCATCTTTGTTGATGA‑TGTTTTATCATGCCTGCAAAGATTAAATAATCA‑GCATTTACCCGCCGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGGGGATGTCGAAGCGCGCCTGCAGCATATTATGTTTGCCCGTAACAGCCAGAAAATATACATCCCGGAGAATTTTa                                                                                                                                   >  1:1192216/1‑288 (MQ=255)
                                                                                                                                                        tCTTTGTTGATGA‑TGTTTTATCATGCCTGCAAAGATTAAATAATCA‑GCATTTACCCGCCGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTGCAGCATATTATGTTTGCCCGTAACAGCCAGAAAATGTACATCCCGGAGAATTTTACCGTctc                                                                                                                            >  1:365556/1‑287 (MQ=255)
                                                                                                                                                               tgatga‑TGTTTTACCATGCCTGAAAAGATTAAATAATCG‑CCATTTCCCCGCCGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTAGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTGCAGCATATTATGTTTGCCCGTAACAGCCAGAAAATGTACATCCCGGAGAATTTTACCGTCTCGTGGGAt                                                                                                                     <  1:432379/289‑1 (MQ=255)
                                                                                                                                                                   ga‑tgTTTTATCATGCCTGCAAAGATTAAATAATCA‑GCATTTACCCGCCGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTgca                                                                                                                                                                                        >  2:928190/1‑218 (MQ=255)
                                                                                                                                                                   ga‑tgTTTTATCATGCCTGCAAAGATTAAATAATCA‑GCATTTACCCGCCGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTgca                                                                                                                                                                                        <  1:928190/218‑1 (MQ=255)
                                                                                                                                                                   ga‑tgTTTTAACAGGCCGGAAAAGATTAAATAATCA‑GCATTTCCCCGCCGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGGCGAAGCGCGCCTGCAGCATATTATGTTTGCCCGTAACAGCCAGAAAATGTACATCCCGGAGAATTTTACCGTCTCGTGGGATTAct                                                                                                                 <  1:1830398/289‑2 (MQ=255)
                                                                                                                                                                                tGCCTGCAAAGATTAAATAATCA‑GCATTTACCCGCCGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTGCAGCATATTATGTTTGCCCGTAACAGCCAGAAAATGTACATCCCGGAGAATTTTACCGTCTCGTGGGATTACTCGTTATGCAAAc                                                                                                     >  2:943137/1‑289 (MQ=255)
                                                                                                                                                                                  ccTGCAAAGATTAAATAATCA‑GCATTTACCCGCCGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGaa                                                                                                                                                                                                                                                   <  2:626627/145‑1 (MQ=255)
                                                                                                                                                                                  ccTGCAAAGATTAAATAATCA‑GCATTTACCCGCCGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGaa                                                                                                                                                                                                                                                   >  1:626627/1‑145 (MQ=255)
                                                                                                                                                                                  ccTGCAAAGATTAAATAATCA‑GCATTTACCCGCCGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTGCAGCATATTATGTTTGCCCGTAACAGCCAGAAAATGTACATCCCg                                                                                                                                             >  2:435425/1‑247 (MQ=255)
                                                                                                                                                                                  ccTGCAAAGATTAAATAATCA‑GCATTTACCCGCCGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTGCAGCATATTATGTTTGCCCGTAACAGCCAGAAAATGTACATCCCg                                                                                                                                             <  1:435425/247‑1 (MQ=255)
                                                                                                                                                                                    tGCAAAGATTAAATAATCA‑GCATTTACCCGCCGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATCTGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTGCAGCATATTATGTTTGCCCGTAACAGCCAGAAAATGTACATCCCGGAGAATTGTACCTTCTCGTGGGATTACTCGTTATCCAAAagcg                                                                                                  >  2:743657/1‑288 (MQ=255)
                                                                                                                                                                                      cAAAGATTAAATAATCA‑GCATTTCCCCGCCGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTGCAGCATATTATGTTTGCCCGTAACAGCCAGAAAATGTACATCCCGGAGAATTTTACCGTCTCGTGGGATTACTCGTTATGCAAACGCGC‑Ca                                                                                              <  1:1497883/289‑1 (MQ=255)
                                                                                                                                                                                                     cA‑GCATTTACCCGCCGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTGCAGCATATTATGTTTGCCCGTAACAGCCAGAAAATGTACATCCCGGAGAATTTTACCGTCTCGTGGGATTACTCGTTATGCAAACGCGC‑CATTGATGAAAACTGCt                                                                               >  2:773432/1‑289 (MQ=255)
                                                                                                                                                                                                      a‑GCATTTACCCGCCGTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTGCAGCATATTATGTTTGCCCGTAACAGCCAGAAAATGTACATCCCGGAGAATTTTACCGTCTCGTGGGATTACTCGTTATGCAAACGCGC‑CATTGATGAAAACTGCtt                                                                              >  1:833108/1‑289 (MQ=255)
                                                                                                                                                                                                                  gccgTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTGCAGCATATTATGTTTGCCCGTAACAGCCAGAAAATGTACATCCCGGAGAATTTTACCGTCTCGTGGGATTACTCGTTATGCAAACGCGC‑CATTGATGAAAACTGCTTTTTCA‑GCGATg                                                                  <  1:1414892/289‑1 (MQ=255)
                                                                                                                                                                                                                   ccgTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTGCAGCATATTATGTTTGCCCGTAACAGCCAGAAAATGTACATCCCGGAGAATTTTACCGTCTCGTGGGATTACTCGTTATGCAAACGCGC‑CATTGATGAAAACTGCTTTTTCA‑GCGATGa                                                                 <  1:1545965/289‑1 (MQ=255)
                                                                                                                                                                                                                   ccgTATCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTGCAGCATATTATGTTTGCCCGTAACAGCCAGAAAATGTACATCCCGGAGAATTTTACCGTCTCGTGGGATTACTCGTTATGCAAACGCGC‑CATTGATGAAAACTGCTTTTTCA‑GCGATGa                                                                 >  1:1240089/1‑289 (MQ=255)
                                                                                                                                                                                                                       aTCCTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTGCTGCATATTTTGTTTGCCCGTAACAGCCAGAAAATGTACATCCCGGAGAATTGTACCGTCTCGTGGGATTCTTCGTTATGCAAACGCGC‑CATTGATGAAAACTGTTTCTTCT‑GCGTTGAAGt                                                              >  2:1157525/1‑288 (MQ=255)
                                                                                                                                                                                                                          cTGTAGTTGTTCCGTGGCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTGCAGCATATTATGTTTGCCCGTAACAGCCAGAAAATGTACATCCCGGAGAATTTTACCGTCTCGTGGGATTACTCGTTATGCAAACGCGC‑CATTGATGAAAACTGCTTTTTCA‑GCGATGAAGTcccc                                                          <  1:1612085/289‑1 (MQ=255)
                                                                                                                                                                                                                          cTGGAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTGCAGCATATTATGTTTGCCCGTAACAGCCAGAAAATGTACATCCCGGAGAATTTTACCGTCTCGTGGGATTACTCGTTATGCAAACGCGC‑CATTGATGAAAACTGCTTTTTCA‑GCGATGAAGTcccc                                                          <  1:1788007/289‑1 (MQ=255)
                                                                                                                                                                                                                            ggAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTGCAGCATATTATGTTTGCCCGTAACAGCCAGAAAATGTACATCCCGGAGAATTTTACCGTCTCGTGGGATTACTCGTTATGCAAACGCGC‑CATTGATGAAAACTGCTTTTTCA‑GCGATGAAGTCCCCg                                                         >  1:1799829/1‑288 (MQ=255)
                                                                                                                                                                                                                            ggAGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTGCAGCATATTATGTTTGCCCGTAACAGCCAGAAAATGTACATCCCGGAGAATTTTACCGTCTCGTGGGATTACTCGTTATGCAAACGCGC‑CATTGATGAAAACTGCTTTTTCA‑GCGATGAAGTCCCCGa                                                        <  2:1132881/289‑1 (MQ=255)
                                                                                                                                                                                                                              aGTTGTTCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTGCAGCATATTATGTTTGCCCGTAACAGCCAGAAAATGTACATCCCGGAGAATTTTACCGTCCCGTGGGATTACTCGTTATGCAAACGAGC‑CATTGATTAAAACTACTTTTTAA‑GCGATGAACGccccaaac                                                      >  2:1474813/1‑285 (MQ=255)
                                                                                                                                                                                                                                ttgttCCGTGTCAGATCAGATTATCGCCCGCGTCTCACAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACCGCTTCTGGGGATGCTGGAAATGGTCACTGATATGGATTCAACCTACATGACCAAAGTGGATGTCGAAGCACGCCTGCAGCATATTATGTTTGCCCGTAACAGCCAGAAAATGGACATCCCGGAGAATTTTACCGATACTTGGGGTTACTCGTTATGCAAAC‑CGCACATTGACGAAAA‑TGTCTTTTCATGTGATGAAGCCCCCGACCGt                                                    >  2:1459753/1‑289 (MQ=255)
                                                                                                                                                                                                                                  gttCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTGCAGCATATTATGTTTGCCCGTAACAGCCAGAAAATGTACATCCCGGAGAATTTTACCGTCTCGTGGGATTACTCGTTATGCAAACGCGC‑CATTGATGaaa                                                                                     <  2:1197977/255‑1 (MQ=255)
                                                                                                                                                                                                                                  gttCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTGCAGCATATTATGTTTGCCCGTAACAGCCAGAAAATGTACATCCCGGAGAATTTTACCGTCTCGTGGGATTACTCGTTATGCAAACGCGC‑CATTGATGAAAACTGCTTTTTCA‑GCGATGAAGTCCCCGACCGTTg                                                  >  1:1274657/1‑289 (MQ=255)
                                                                                                                                                                                                                                  gttCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTGCAGCATATTATGTTTGCCCGTAACAGCCAGAAAATGTACATCCCGGAGAATTTTACCGTCTCGTGGGATTACTCGTTATGCAAACGCGC‑CATTGATGAAAACTGCTTTTTCA‑GCGATGAAGTCCCCGACCGTTg                                                  >  1:874605/1‑289 (MQ=255)
                                                                                                                                                                                                                                  gttCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTGCAGCATATTATGTTTGCCCGTAACAGCCAGAAAATGTACATCCCGGAGAATTTTACCGTCTCGTGGGATTACTCGTTATGAAAACGCGC‑AATTTATGAAAACTGCTTTTTCA‑GCGATGAAGTACCTACCCGTTg                                                  >  2:1016914/1‑289 (MQ=255)
                                                                                                                                                                                                                                   ttCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGa                                                                                                                                                                                                                                  >  2:343365/1‑114 (MQ=255)
                                                                                                                                                                                                                                   ttCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTGCAGCATATTATGTTTGCCCGTAACAGCCAGAAAATGTACATCCCGGAGAATTTTACCGTctcg                                                                                                                           >  2:1367261/1‑214 (MQ=255)
                                                                                                                                                                                                                                   ttCCGTGTCAGATCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTGCAGCATATTATGTTTGCCCGTAACAGCCAGAAAATGTACATCCCGGAGAATTTTACCGTCTCGTGGGATTACTCGTTATGCAAACGCGC‑CATTGATGAAAACTGCTTTTTCA‑GCGATGAAGTCCCCGACCGTTgg                                                 >  1:651159/1‑289 (MQ=255)
                                                                                                                                                                                                                                    tccgtgtcagaTCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTGCAGCATATTATGTTTGCCCGTAACAGCCAGAAAATGTACATCCCGGAGAATTTTACCGTCTCGTGGGATTACTCGTTATGCAAACGCGC‑CATTGATGAAAACTGCTTTTTCA‑GCGATGAAGTCCCCGACCGTTgg                                                 <  1:767691/279‑1 (MQ=255)
                                                                                                                                                                                                                                      cgtgtcagaTCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTGCAGCATATTATGTTTGCCCGTAACAGCCAGAAAATGTACATCCCGGAGAATTTTACCGTCTCGTGGGATTACTCGTTATGCAAACGCGC‑CATTGATGAAAACTGCTTTTTCA‑GCGATGAAGTCCCCGACCGTTGGGGt                                              <  1:943137/282‑1 (MQ=255)
                                                                                                                                                                                                                                        tgtcagaTCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTGCAGCATATTATGTTTGCCCGTAACAGCCAGAAAATGTACATCCCGGAGAATTTTACCGTCTCGTGGGATTACTCGTTATGCAAACGCGC‑CATTGATGAAAACTGCTTTTTCA‑GCGATGAAGTCCCCGACCGTTGGGGTg                                             >  2:1723152/6‑288 (MQ=255)
                                                                                                                                                                                                                                         gtcagaTCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTGCAGCATATTATGTTTGCCCGTAACAGCCAGAAAATGTACATCCCGGAGAATTTTACCGTCTCGTGGGATTACTCGTTATGCAAACGCGC‑CATTGATGAAAACTGCTTTTTCA‑GCGATGAAGTCCCCGACCGTTGGGGTGa                                            <  2:1890892/284‑1 (MQ=255)
                                                                                                                                                                                                                                            agaTCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTGCAGCATATTATGTTTGCCCGTAACAGCCAGAAAATGTACATCCCGGAGAATTTTACCGTCTCGTGGGATTACTCGTTATGCAAACGCGC‑AATTGATGAAAACTGCTTTTTCA‑GCGATGAAGTCCCCGACCGTTGGGGTGACTGt                                        >  1:1322588/2‑289 (MQ=255)
                                                                                                                                                                                                                                             gaTCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTGCAGCATATTATGTTTGCCCGTAACAGCCAGAAAATGTACATCCCGGAGAATTTTACCGTCTCGTGGGATTACTCGTTATGCAAACGCGC‑CATTGATGAAAACTGCTTTTTCA‑GCGATGAAGTCCCCGACCGTTGGGGTGACTGTa                                       >  2:1341168/1‑289 (MQ=255)
                                                                                                                                                                                                                                             gaTCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTGCAGCATATTATGTTTGCCCGTAACAGCCAGAAAATGTACATCCCGGAGAATTTTACCGTCTCGTGGGATTACTCGTTATGCAAACGCGC‑CATTGATGAAAACTGCTTTTTCA‑GCGATGAAGTCCCCGACCGTTGGGGTGACTGTa                                       >  2:369113/1‑289 (MQ=255)
                                                                                                                                                                                                                                             gaTCAGATTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTGCAGCATATTATGTTTGCCCGTAACAGCCAGAAAATGTACATCCCGGAGAATTTTACCGTCTCGTGGGAGTACTCGTTATGCAAACGCGC‑CATTTATGAAAACTGCTTTTTCA‑GCGATTAAGTCTCCGACCTGTgggggg                                             >  2:1261357/1‑281 (MQ=255)
                                                                                                                                                                                                                                                   aTTATCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTGCAGCATATTATGTTTGCCCGTAACAGCCAGAAAATGTACATCCCGGAGAATTTTACCGTCTCGTGGGATTACTCGTTATGCAAACGCGC‑CATTGATGAAAACTGCTTTTTCA‑GCGATGAAGTCCCCGACCGTTGGGGTGACTg                                         >  1:147850/1‑281 (MQ=255)
                                                                                                                                                                                                                                                      aTCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTGCAGCATATTATGTTTGCCCGTAACAGCCAGAAAATGTACATCCCGGAGAATTTTACCGTCTCGTGTGATTACTCGTTATGCAAACGCGC‑CATTGATGAAAACTGCTTTTTCA‑GCGATGAAGTCCCCGACCGTTGGGGTGACTGTATTGCGGCAc                              <  1:714355/289‑1 (MQ=255)
                                                                                                                                                                                                                                                       tCGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTGCAGCATATTATGTTTGCCCGTAACAGCCAGAAAATGTACATCCCGGAGAATTTTACCGTCTCGTGGGATTACTCGTTATGCAAACGCGC‑CATTGATGAAAACTGCTTTTTCA‑GCGATGAAGTCCCCGACCGTTGGGGTGACTGTATTGCGGCACg                             <  2:207073/289‑1 (MQ=255)
                                                                                                                                                                                                                                                        cGCCCGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTGCAGCATATTATGTTTGCCCGTAACAGCCAGAAAATGTACATCCCGGAGAATTTTACCGTCTCGTGGGATTACTCGTTATGCAAACGCGC‑CATTGATGAAAACTGCTTTTTCA‑GCGATGAAGTCCCCGACCGTTGGGGTGACTGTATTGCGGCACGc                            >  2:1229433/1‑289 (MQ=255)
                                                                                                                                                                                                                                                          cccGCGTCTCGCAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTGCAGCATATTATGTTTGCCCGTAACAGCCAGAAAATGTACATCCCGGAGAATTTTACCGTCTCGTGGGATTACTCGTTATGCAAACGCGC‑CATTGATGAAAACTGCTTTTTCA‑GCGATGAAGTCCCCGACCGTTGGGGTGACTGTATTGCGGCACGCaa                          >  1:573158/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                   cgcAATCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTGCAGCATATTATGTTTGCCCGTAACAGCCAGAAAATGTACATCCCGGAGAATTTTACCGTCTCGTGGGATTACTCGTTATGCAAACGCGC‑CATTGATGAAAACTGCTTTTTCA‑GCGATGAAGTCCCCGACCGTTGGGGTGACTGTATTGCGGCGCGCAATCTTGGCAt                 <  2:833108/287‑1 (MQ=255)
                                                                                                                                                                                                                                                                      aaTCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTGCAGCATATTATGTTTGCCCGTAACAGCCAGAAAATGTACATCCCGGAGAATTTTACCGTCTCGTGGGATTACTCGTTATGCAAACGCGC‑CATTGATGAAAACTGCTTTTTCA‑GCGATGAAGTCCCCGACCGTTGGGGTGACTGTATTGCGGCACGCAATCTTGGCATca               <  1:196620/288‑1 (MQ=255)
                                                                                                                                                                                                                                                                      aaTCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTGCAGCATATTATGTTTGCCCGTAACAGCCAGAAAATGTACATCCCGGAGAATTTTACCGTCTCGTGGGATTACTCGTTATGCAAACGCGC‑CATTGATGAAAACTGCTTTTTCA‑GCGATGAAGTCCCCGACCGTTGGGGTGACTGTATTGCGGCACGCAATCTTGGCATca               <  2:860738/288‑1 (MQ=255)
                                                                                                                                                                                                                                                                        tCCCTTGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTGCAGCATATTATGTTTGCCCGTAACAGCCAGAAAATGTACATCCCGGAGAATTTTACCGTCTCGTGGGATTACTCGTTATGCAAACGCGC‑CATTGATGAAAACTGCTTTTTCA‑GCGATGAAGTCCCCGACCGTTGGGGTGACTGTATTGCGGCACGCAATCTTGGCATcacca            <  1:858250/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                             tGCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTGCAGCATATTATGTTTGCCCGTAACAGCCAGAAAATGTACATCCCGGAGAATTTTACCGTCTCGTGGGATTACTCGTTATGCAAACGCGC‑CATTGATGAAAACTGCTTTTTCA‑GCGATGAAGTCCCCGACCGTTGGGGTGACTGTATTGCGGCACGCAATCTTGGCATCACCACAtt        >  1:1672951/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                              gCCAAAGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTGCAGCATATTATGTTTGCCCGTAACAGCCAGAAAATGTACATCCCGGAGAATTTTACCGTCTCGTGGGATTACTCGTTATGCAAACGCGC‑CATTGATGAAAACTGCTTTTTCA‑GCAATGAATTCCCCGACCGTTGGGGTGCCTTTCTTTCGGCACGCAATCTTGGCATCACCGCAtt        >  2:1739541/1‑287 (MQ=255)
                                                                                                                                                                                                                                                                                  aaGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTGCAGCATATTATGTTTGCCCGTAACAGCCAGAAAATGTACATCCCGGAGAATTTTACCGTCTCGTGGGATTACTCGTTATGCAAACGCGC‑CATTGATGAAAACTGCTTTTTCA‑GCGATGAAGTCCCCGACCGTTGGGGTGACTGTATTGCGGCACGCAATCTTGGCATCACCACATTTCTGa   >  2:883078/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                                  aaGAACAGTCACTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAATCAACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTGCAGCATATTATGTTTGCCCGTAACAGCCAGAAAATGTACATCCCGGAGAATTTTACCGTCTCGTGGGATTACTCGTTATGCAAACGCGC‑CATTGATGAAAACTGCTTTTTCA‑GCGATGAAGTCCCCGACCGTTGGGGTGACTGTATTGCGGCACGCAATCTTGGCATCACCACATTTCTGAg  <  1:173637/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                                          |||                                                                                                                                                                                                                                                                                        
CCAGCCAGGACCAGCAAGCAAGGCAGAACAAAACTGATAATTTTCATTTATTGATCTCACATATTTATCCAAGATTAGAGTATCGCGGTATCGTTTTGTTTTGCAGCACTATTTTTATTACATTCACTCAAAACATATTACGTCTTGTTTCATCTTTGTTGATGA‑TGTTTTATCATGCCTGCAAAGATTAAATAATCA‑GCATTTACCCGCCGTATCCTGGAGTTGTTCCGTGAGTGATCAGATTATCGCCCGCGTCAGCCAATCCCTTGCCAAAGAACAGAGTCTGGAAAGTCTGGTCCGACAGCTTCTGGAGATGCTGGAAATGGTCACTGATATGGAAAGTACCTACCTGACCAAAGTGGATGTCGAAGCGCGCCTGCAGCATATTATGTTTGCCCGTAACAGCCAGAAAATGTACATCCCGGAGAATTTTACCGTCAGCTGGGATTACAGCTTATGCAAACGCGC‑CATTGATGAAAACTGCTTTTTCA‑GCGATGAAGTCCCCGACCGTTGGGGTGACTGTATTGCGGCACGCAATCTTGGCATCACCACATTTCTGAG  >  CP042583/1558149‑1558709

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A