Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F210 I1 R1 4930 262.8 3829204 96.6% 3699011 272.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,580,413 3 bp→TCA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,580,4130AT99.2% 585.5 / NA 247intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base A (0/0);  major base T (107/137);  minor base G (2/0);  total (110/137)
Fisher's exact test for biased strand distribution p-value = 1.95e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,580,4140GC99.6% 585.0 / NA 247intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (1/0);  new base C (109/136);  total (110/137)
Fisher's exact test for biased strand distribution p-value = 4.47e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,580,4150TA99.6% 587.0 / NA 247intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (1/0);  new base A (108/137);  total (110/137)
Fisher's exact test for biased strand distribution p-value = 4.43e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 247 total aligned reads displayed.

GATGAGTAGTCAGTTTCATGTTGGCATTAACGTCGCACCCAGCCATTTTCGCCGTGGTGTGCTGATAAAAGATCTCAATCAGTACTGGTTTAGCGCTCACCCGATTCAGCAACTGATCCTCGAAATCACCGAACGCGATGCCTTACTGGATGTTGATTATCGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCAGCTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGAGTTTTACCGCAGCTATAGGTTCTGACGCGGTTAACAGC‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACTGAATATTGAACTGGTGGCGGAGGGCGTGGAAACGCAAGAACAGGCGAAGTATTTGCGCCGTCATGGCGTGCATATTTTGCAAGGGTATTTGTACGCACAGCCGATGCCGCTACGTGATTTTCCCAAATGGCTGGCGGGCAGCCAACCGCCGCCCGCCCGGCATAATGGACATATCACGCCCATTATGCCGTTACGTTAACGCTTA  >  CP042583/1580133‑1580694
                                                                                                                                                                                                                                                                                        |||                                                                                                                                                                                                                                                                                         
 aTGAGTAGTCAGTTTCATGTTGGCATTAACGTCGCACCCAGCCATTTTCGCCGTGGTGTGCTGATAAAAGATCTCAATCAGTACTGGTTTAGCGCTCACCCGATTCAGCAACTGATCCTCGAAATCACCGAACGCGATGCCTTACTGGATGTTGATTATCGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTAcc                                                                                                                                                                                                                                                                                     >  1:205374/1‑288 (MQ=255)
 aTGAGTAGTCAGTTTCATGTTGGCATTAACGTCGCACCCAGCCATGTTCGCCGTGGTGTGCTGATAAAAGATCTCAATCAGTACTGGTTTAGCGCTCACCCGATTCAGCAACTGATCCTCGAAATCACCGAACGCGATGCCTTACTGGATGTTGATTATCGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCg                                                                                                                                                                                                                                                                                    <  2:1818112/289‑1 (MQ=255)
  tGAGTAGTCAGTTTCATGTTGGCATTAACGTCGCACCCAGCCATTTTCGCCGTGGTGTGCTGATAAAAGATCTCAATCAGTACTGGTTTAGCGCTCACCCGATTCAGCAACTGATCCTCGAAATCACCGAACGCGATGCCTTACTGGATGTTGATTATCGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCg                                                                                                                                                                                                                                                                                    <  2:212401/288‑1 (MQ=255)
  tGAGTAGTCAGTTTCATGTTGGCATTAACGTCGCACCCAGCCATTTTCGCCGTGGTGTGCTGATAAAAGATCTCAATCAGTACTGGTTTAGCGCTCACCCGATTCAGCAACTGATCCTCGAAATCACCGAACGCGATGCCTTACTGGATGTTGATTATCGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCg                                                                                                                                                                                                                                                                                    <  1:1269127/288‑1 (MQ=255)
  tGAGTAGTCAGTTTCATGTTGGCATTAACGTCGCACCCAGCCATTTTCGCCGTGGTGTGCTGATAAAAGATCTCAATCAGTACTGGTTTAGCGCTCACCCGATTCAGCAACTGATCCTCGAAATCACCGAACGCGATGCCTTACTGGATGTTGATTATCGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCg                                                                                                                                                                                                                                                                                    <  1:1882696/288‑1 (MQ=255)
        gtCAGTTTCATGTTGGCATTAACGTCGCACCCAGCCATTTTCGCCGTGGTGTGCTGATAAAAGATCTCAATCAGTACTGGTTTAGCGCTCACCCGATTCAGCAACTGATCCTCGAAATCACCGAACGCGATGCCTTACTGGATGTTGATTATCGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCtat                                                                                                                                                                                                                                                                             >  2:166177/1‑289 (MQ=255)
        gtCAGTTTCATGTTGGCATTAACGTCGCACCCAGCCATTTTCGCCGTGGTGTGCTGATAAAAGATCTCAATCAGTACTGGTTTAGCGCTCACCCGATTCAGCAACTGATCCTCGAAATCACCGAACGCGATGCCTTACTGGATGTTGATTATCGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCtat                                                                                                                                                                                                                                                                             <  2:84364/289‑1 (MQ=255)
          cAGTTTCATGTTGGCATTAACGTCGCACCCAGCCATTTTCGCCGTGGTGTGCTGATAAAAGATCTCAATCAGTACTGGTTTAGCGCTCACCCGATTCAGCAACTGATCCTCGAAATCACCGAACGCGATGCCTTACTGGATGTTGATTATCGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCtat                                                                                                                                                                                                                                                                             <  1:267498/287‑1 (MQ=255)
             tttCATGTTGGCATTAACGTCGCACCCAGCCATTTTCGCCGTGGTGTGCTGATAAAAGATCTCAATCAGTACTGGTTTAGCGCTCACCCGATTCAGCAACTGATCCTCGAAATCACCGAACGCGATGCCTTACTGGATGTTGATTATCGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGtt                                                                                                                                                                                                                                                                        <  1:1324738/289‑1 (MQ=255)
                cATGTTGGCATTAACGTCGCACCCAGCCATTTTCGCCGTGGTGTGCTGATAAAAGATCTCAATCAGTACTGGTTTAGCGCTCACCCGATTCAGCAACTGATCCTCGAAATCACCGAACGCGATGCCTTACTGGATGTTGATTATCGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTg                                                                                                                                                                                                                                                                     >  2:754496/1‑289 (MQ=255)
                      ggCATTAACGTCGCACCCAGCCATTTTCGCCGTGGTGTGCTGATAAAAGATCTCAATCAGTACTGGTTTAGCGCTCACCCGATTCAGCAACTGATCCTCGAAATCACCGAACGCGATGCCTTACTGGATGTTGATTATCGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCgg                                                                                                                                                                                                                                                               >  1:1725129/1‑289 (MQ=255)
                        cATTAACGTCGCACCCAGCCATTTTCGCCGTGGTGTGCTGATAAAAGATCTCAATCAGTACTGGTTTAGCGCTCACCCGATTCAGCAACTGATCCTCGAAATCACCGAACGCGATGCCTTACTGGATGTTGATTATCGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGt                                                                                                                                                                                                                                                              <  1:332829/288‑1 (MQ=255)
                                 cGCACCCAGCCATTTTCGCCGTGGTGTGCTGATAAAAGATCTCAATCAGTACTGGTTTAGCGCTCACCCGATTCAGCAACTGATCCTCGAAATCACCGAACGCGATGCCTTACTGGATGTTGATTATCGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAActcgacg                                                                                                                                                                                                                                                    <  1:1156341/289‑7 (MQ=255)
                                 cGCACCCAGCCATTTTCGCCGTGGTGTGCTGATAAAAGATCTCAATCAGTACTGGTTTAGCGCTCACCCGATTCAGCAACTGATCCTCGAAATCACCGAACGCGATGCCTTACTGGATGTTGATTATCGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAActcgacg                                                                                                                                                                                                                                                    >  1:1206670/1‑283 (MQ=255)
                                     cccAGCGTTTTTAGACGTAGTGTGCTGATAAAATGACTCAATCAGTACTGGTTTAGCGCTCACCCGATTCAGCAACTGATCCTCGAAATCACCGAACGCGATGCCTTACTGGATGTTGATTATCGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGa                                                                                                                                                                                                                                               <  2:1761042/289‑1 (MQ=255)
                                        aGCCATTTTCGCCGTGGTGTGCTGATACAAGATCTCAATCAGTACTGGTTTAGCGCTCACCCGATTCAGCAACTGATCCTCGAAATCACCGAACGCGATGCCTTACTGGATGTTGATTATCGGATTGCCACCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACAGGCAACAGCTCGTGTTTCTGACTTGAACAATTACGTCCCGACGTGCCGAAAATTGATAGCTCATTTACCGCAACTATAGGCTCTGACGCGGTTAACTTG‑ACGGTGAACg                                                                                                                                                                                                                                            >  2:1465160/1‑289 (MQ=255)
                                                 cGCCGTGGTGTGCTGATAAAAGATCTCAATCAGTAGTGGTTTAGCGCTCACCCGATTCAGCAACTGATCCTCGAAATCACCGAACGCGATGCCTTACTGGATGTTGATTATCGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATatcatca                                                                                                                                                                                                                                   <  2:584766/289‑1 (MQ=255)
                                                         tgtgCTGATAAAAGATCTCAATCAGTACTGGTTTAGCGCTCACCCGATTCAGCAACTGATCCTCGAAATCACCGAACGCGATGCCTTACTGGATGTTGATTATCGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCt                                                                                                                                                                                                                            <  2:876921/288‑1 (MQ=255)
                                                                aTAAAAGATCTCAATCAGTACTGGTTTAGCGCTCACCCGATTCAGCAACTGATCCTCGAAATCACCGAACGCGATGCCTTACTGGATGTTGATTATCGGATTGCCCTCGAGCTGCATCGTAAAAACGTCAACCTGGCGATTGATGACTTCGGCACCGGAAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAACATCGATAAGTCATTTACCGAAGCTATAGGTTATGACCGGGTTAACTCG‑ACTGAGACGTAGATCTTCATCGCTCT‑GGGGCaac                                                                                                                                                                                                                   >  2:820441/1‑288 (MQ=255)
                                                                  aaaaGATCTCAATCAGTACTGGTTTAGCGCTCACCCGATTCAGCAACTGATCCTCGAAATCACCGAACGCGATGCCTTACTGGATGTTGATTATCGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGa                                                                                                                                                                                                                 <  2:1291534/289‑1 (MQ=255)
                                                                    aaGATCTCAATCAGTACTGGTTTAGCGCTCACCCGATTCAGCAACTGATCCTCGAAATCACCGAACGCGATGCCTTACTGGATGTTGATTATCGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACt                                                                                                                                                                                                               <  1:455340/289‑1 (MQ=255)
                                                                    aaGATCTCAATCAGTACTGGTTTAGCGCTCACCCGATTCAGCAACTGATCCTCGAAATCACCGAACGCGATGCCTTACTGGATGTTGATTATCGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACt                                                                                                                                                                                                               <  1:1224767/289‑1 (MQ=255)
                                                                    aaGATATCAATCAGTACTGGTTTCGCGCTCACCCGATTCAGCAACTGGTCCTCGAAATCACCGAACGCGATGCCTTACTGGATGTTGATTATCGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACt                                                                                                                                                                                                               <  2:1002351/289‑1 (MQ=255)
                                                                     aGATCTCAATCAGTACTGGTTTAGCGCTCACCCGATTCAGCAACTGATCCTCGAAATCACCGAACGCGATGCCTTACTGGATGTTGATTATCGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGa                                                                                                                                                                                                                                                                    >  2:670325/1‑237 (MQ=255)
                                                                      taTCTCACCCACTACTTGTTTCGCGCTCACCCGTTTCAGCAACTGATCCTCGAAATCACCGAACGCGATGCCTTACTGGATGTGTATTATCGGATGGCCCGCGAGCTTCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACt                                                                                                                                                                                                               <  2:711579/286‑1 (MQ=255)
                                                                          tcAATCAGTACTGGTTTAGCGCTCACCCGATTCAGCAACTGATCCTCGAAATCACCGAACGCGATGCCTTACTGGATGTTGATTATCGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACTGAatat                                                                                                                                                                                                         >  1:521310/1‑289 (MQ=255)
                                                                          tcAATCAGTACTGGTTTAGCGCTCACCCGATTCAGCAACTGATCCTCGAAATCACCGAACGCGATGCCTTACTGGATGTTGATTATCGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAAAATTACGTCCTGACGTGATGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGC‑GTGTACACCGACGGGTACCGATAACATCATTCCGCT‑GGGGCAACGCCTGagatt                                                                                                                                                                                                         >  2:921423/1‑285 (MQ=255)
                                                                                  tACTGGTTTAGCGCTCACCCGATTCAGCAACTGATCCTCGAAATCACCGAACGCGATGCCTTACTGGATGTTGATTATCGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGAcg                                                                                                                                                                                                                                                                  >  2:1726515/1‑226 (MQ=255)
                                                                                  tACTGGTTTAGCGCTCACCCGATTCAGCAACTGATCCTCGAAATCACCGAACGCGATGCCTTACTGGATGTTGATTATCGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCaa                                                                                                                                                                                                                    >  1:1101201/1‑270 (MQ=255)
                                                                                   aCTGGTTTAGCGCTCACCCGATTCAGCAACTGATCCTCGAAATCACCGAACGCGATGCCTTACTGGATGTTGATTATCGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACTGAATATTGAACtg                                                                                                                                                                                                  <  1:1829120/287‑1 (MQ=255)
                                                                                   aCTGGTTTAGCGCTCACCCGATTCAGCAACTGATCCTCGAAATCACCGAACGCGATGCCTTACTGGATGTTGATTATCGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACTGAATATTGAACtg                                                                                                                                                                                                  <  1:573944/287‑1 (MQ=255)
                                                                                      ggTTTAGCGCTCACCCGATTCAGCAACTGATCCTCGAAATCACCGAACGCGATGCCTTACTGGATGTTGATTATCGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGa                                                                                                                                                                                                                                                                    <  1:1365461/220‑1 (MQ=255)
                                                                                      ggTTTAGCGCTCACCCGATTCAGCAACTGATCCTCGAAATCACCGAACGCGATGCCTTACTGGATGTTGATTATCGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGa                                                                                                                                                                                                                                                                    >  2:1365461/1‑220 (MQ=255)
                                                                                       gTTTAGCGCTCACCCGATTCAGCAACTGATCCTCGAAATCACCGAACGCGATGCCTTACTGGATGTTGATTATCGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACTGAATATTGAACTGGTGGCg                                                                                                                                                                                            >  1:492879/1‑289 (MQ=255)
                                                                                        tttAGCGCTCACCCGATTCAGCAACTGATCCTCGAAATCACCGAACGCGATGCCTTACTGGATGTTGATTATCGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACTGAATATTGAACTGGTGGCg                                                                                                                                                                                            <  1:646481/288‑1 (MQ=255)
                                                                                        tttAGCGCTCACCCGATTCAGCAACTGATCCTCGAAATCACCGAACGCGATGCCTTACTGGATGTTGATTATCGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACTGAATATTGAACTGGTGGCg                                                                                                                                                                                            <  2:1729223/288‑1 (MQ=255)
                                                                                         ttAGCGCTCACCCGATTCAGCAACTGATCCTCGAAATCACCGAACGCGATGCCTTACTGGATGTTGATTATCGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACTGAATATTGAACTGGTGGCGGa                                                                                                                                                                                          <  1:166177/289‑1 (MQ=255)
                                                                                            gcgcTCACCCGATTCAGCAACTGATCCTCGAAATCACCGAACGCGATGCCTTACTGGATGTTGATTATCGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTTCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACTGTGACCGATATCATCATCGCGCT‑GGGGAAAAGACTGAATATTGAACTGGTTGCGGAggg                                                                                                                                                                                       >  2:1522657/1‑289 (MQ=255)
                                                                                            gcgcTCACCCGATTCAGCAACTGATCCTCGAAATCACCGAACGCGATGCCTTACTGGATGTTGATTATCGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACt                                                                                                                                                                                                               >  1:430083/1‑265 (MQ=255)
                                                                                            gcgcTCACCCGATTCAGCAACTGATCCTCGAAATCACCGAACGCGATGCCTTACTGGATGTTGATTATCGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACt                                                                                                                                                                                                               <  2:430083/265‑1 (MQ=255)
                                                                                            gcgcTCACCCGATTCAGCAACTGATCCTCGAAATCACCGAACGCGATGCCTTACTGGATGTTGATTATCGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACTGAATATTGAACTGGTGGCGGAgg                                                                                                                                                                                        >  1:968559/1‑288 (MQ=255)
                                                                                            gcgcTCACCCGATTCAGCAACTGATCCTCGAAATCACCGAACGCGATGCCTTACTGGATGTTGATTATCGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATAATCGCGCC‑GGGGCAAAGCCTGAATATTGAACTGGTGGCGGAggg                                                                                                                                                                                       >  2:1126934/1‑289 (MQ=255)
                                                                                                 cACCCGATTCAGCAACTGATCCTCGAAATCACCGAACGCGATGCCTTACTGGATGTTGATTATCGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACTGAATATTGAACTGGTGGCGGAGGGCGTgg                                                                                                                                                                                  >  1:486365/1‑289 (MQ=255)
                                                                                                  aCCCGATTCAGCAACTGATCCTCGTAATCACCGAACGCGATGCCTTACTGGATGTTGATTATCGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACTGAATATTGAACTGGTGGCGGAGGGCGTGGa                                                                                                                                                                                 <  2:1824144/289‑1 (MQ=255)
                                                                                                        ttCAGCAACTTATCCTCGAAATCACCGAACGCGATGCCTTACTGGATGTTGATTATCGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACTGAATATTGAACTGGTGGCGGAGGGCGTGGAAACGc                                                                                                                                                                            <  2:1733721/288‑1 (MQ=255)
                                                                                                             cAACTGTTCCACGTAGTACCCGAAGGCGATTGCTTAATGGGTGTGTATTAGCGGATTGCCCGCAGTCTGCATCGTAAACACGTCAAGCTGGGGATTGATTGCTTCGGAACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTAATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACTGAATATTGAACTGGTGGCGGAGGGCGTGGAAACGCAAGaa                                                                                                                                                                       <  2:1163788/288‑1 (MQ=255)
                                                                                                              aaCTGATCCTCGAAATCACCGAACGCGATGCCTTACTGGATGTTGATTATCGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCg                                                                                                                                                                                                                                                                                    <  1:1479576/180‑1 (MQ=255)
                                                                                                              aaCTGATCCTCGAAATCACCGAACGCGATGCCTTACTGGATGTTGATTATCGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCg                                                                                                                                                                                                                                                                                    >  2:1479576/1‑180 (MQ=255)
                                                                                                                  gATCCTCGAAATCACCGAACGCGATGCCTTACTGGATGTTGATTATCGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACTGAATATTGAACTGGTGGCGGAGGGCGTGGAAACGCAAGAACAGGCg                                                                                                                                                                 >  2:1566869/1‑289 (MQ=255)
                                                                                                                       tCGAAATCACCGAACGCGATGCCTTACTGGATGTTGATTATCGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACTGAATATTGAACTGGTGGCGGAGGGCGTGGAAACGCAAGAACAGGCGAAGTa                                                                                                                                                            >  1:141676/1‑289 (MQ=255)
                                                                                                                           aaacACCGAACGCGGTGTCTTACTGGCTGTTGCTTATCGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCGAAGACTGAATATTGAACTGGTGGCGGAGGGCGTGGAAACGCAAGAACAGGCGAAGTATTTg                                                                                                                                                        <  2:1705293/286‑1 (MQ=255)
                                                                                                                             tCACCGAACGCGATGCCTTACTGGATGTTGATTATCGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACTGAATATTGAACTGGTGGCGGAGGGCGTGGAAACGCAAGAACAGGCGAAGTATTTgcg                                                                                                                                                      <  1:754496/289‑1 (MQ=255)
                                                                                                                               aCCGAACGCGATGCCTTACTGGATGTTGATTATCGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATGCTCATCGCGCG‑GGGGCAAAGCCTGAATATTGAACTGGTGGTGGGGGGTGGGGCAAGGCACGGAACGGCCAGGCATTTGCGcc                                                                                                                                                    >  2:1502513/1‑289 (MQ=255)
                                                                                                                               aCCGAACGCGATGCCTTACTGGATGTTGATTATCGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACTGAATATTGAACTGGTGGCGGAGGGCGTGGAAACGCAAGAACAGGCGAAGTATTTgcgc                                                                                                                                                     >  2:474813/1‑288 (MQ=255)
                                                                                                                                    aCGGGAGGCCGTACTGGGTGTGGTGTATGGGGTTGCCGCCGAGCTGAAGCGTAAAAACGTCTAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACTGAATATTGAACTGGTGGCGGAGGGCGTGGAAACGCAAGAACAGGCGAAGTATTTGCGCCGTCAt                                                                                                                                               <  2:864161/289‑1 (MQ=255)
                                                                                                                                      gcgATGCCTTACTGGATGTTGATTATCGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACTGAATATTGAACTGGTGGCGGAGGGCGTGGAAACGCAAGAACAGGCGAAGTATTTGCGCCGTCATg                                                                                                                                              <  2:319445/288‑1 (MQ=255)
                                                                                                                                         aTGCCTTACTGGGTGTTGATTATCGGATTGCCCGCGGGATGCATCGTAAAATAGTCAAACTGTCGATTGAGGACTTCGGCACCGGCAACAGCTCGGTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACTGAATATTGAACTGGTGGCGGAGGGCGTGGAAACGCAAGAACAGGCGAAGTATTTGCGCCGTCATGGCg                                                                                                                                           <  2:1898996/288‑1 (MQ=255)
                                                                                                                                                     aggtcgATTATGGGCTTGCCCGCGAGCCGCATAGTAGAAGCGGCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACTGAATATTGAACTGGTGGCGGAGGGCGTGGAAACGCAAGAACAGGCGAAGTATTTGCGCCGTCATGGCGTGCATATTTTGc                                                                                                                               <  2:109920/283‑1 (MQ=255)
                                                                                                                                                      tgtgGATTATCGGATTGCCCGCGCGCTGCATCGTAAAAACGTCACACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACTGAATATTGAACTGGTGGCGGAGGGCGTGGAAACGCAAGAACAGGCGAAGTATTTGCGCCGTCATGGCGTGCATATTTTGCaa                                                                                                                             <  2:141676/289‑1 (MQ=255)
                                                                                                                                                      tGTTGATTATCGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACTGAATATTGAACTGGTGGCGGAGGGCGTGGAAACGCAAGAACAGGCGAAGTATTTGCGCCGTCATGGCGTGCATATTTTGCaa                                                                                                                             >  2:273529/1‑289 (MQ=255)
                                                                                                                                                      tGTTGATTATCGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACTGAATATTGAACTGGTGGCGGAGGGCGTGGAAACGCAAGAACAGGCGAAGTATTTGCGCCGTCATGGCGTGCATATTTTGCaa                                                                                                                             <  2:17218/289‑1 (MQ=255)
                                                                                                                                                      tGTTGATTATCGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACTGAATATTGAACTGGTGGCGGAGGGCGTGGAAACGCAAGAACAGGCGAAGTATTTGCGCCGTCATGGCGTGCATATTTTGCaa                                                                                                                             >  2:185021/1‑289 (MQ=255)
                                                                                                                                                      tGTTGATTATCGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACTGAATATTGAACTGGTGGCGGAGGGCGGGGAAACGCAAGAAAAGGCGACGCATTTGCGCCGTCATGGCGTTCATAATTTGCaa                                                                                                                             >  2:56604/1‑289 (MQ=255)
                                                                                                                                                      tGTTGATTAGCGGATTGCCGGCGAGCTGCATCGTAAACACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACTGAATATTGAACTGGTGGCGGAGGGCGTGGAAACGCAAGAACAGGCGAAGTATTTGCGCCGTCATGGCGTGCATATTTTGCaa                                                                                                                             <  2:193033/289‑1 (MQ=255)
                                                                                                                                                         tGATTTTCGGATTGCCCGCCGGCTGCAGCGTAAAAACGGAAAACTGGCGATTGATGACTTCGGCACCGGCCACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACTGAATATTGAACTGGTGGCGGAGGGCGTGGAAACGCAAGAACAGGCGAAGTATTTGCGCCGTCATGGCGTGCATATTTTGCAAggg                                                                                                                          <  2:937866/289‑1 (MQ=255)
                                                                                                                                                         tGATTATCGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCt                                                                                                                                                                                                                            <  2:376547/192‑1 (MQ=255)
                                                                                                                                                           aTTATCGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACTGAATATTGAACTGGTGGCGGAGGGCGTGGAAACGCAAGAACAGGCGAAGTATTTGCGCCGTCATGGCGTGCATATTTTGCAAGGGTa                                                                                                                        >  1:506652/1‑289 (MQ=255)
                                                                                                                                                            ttATCGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACTGAATATTGAACTGGTGGCGGAGGGCGTGGAAACGCAAGAACAGGCGAAGTATTTGCGCCGTCATGGCGTGCATATTTTGCAAGGGTa                                                                                                                        <  1:830091/288‑1 (MQ=255)
                                                                                                                                                                cGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGGCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACTGAATATTGAACTGGTGGCGGAGGGCGTGGAAACGCAAGAAAAGGCGAAGTATTTGCGCCGTCATGGCGTGCATATTTTGAAAGGGTATTTGt                                                                                                                   >  1:904223/1‑289 (MQ=255)
                                                                                                                                                                           cgAGCTGCATCGTAAATACGTCAAACTGGCGATGTATGACTTCGGCAACGGCAACAGCGCGGTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGAGAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACTGAATATTGAACTGGTGGCGGAGGGCGTGGAAACGCAAGAACAGGCGAAGTATTTGCGCCGTCATGGCGTGCATATTTTGCAAGGGTATTTGTACGCACAGCCg                                                                                                        <  2:1206670/289‑1 (MQ=255)
                                                                                                                                                                             aGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACTGAATATTGAACTGGTGGCGGAGGGCGTGGAAACGCAAGAACAGGCGAAGTATTTGCGCCGTCATGGCGTGCATATTTTGCAAGGGTATTTGTACGCACAGCCGAt                                                                                                      >  2:1237237/1‑289 (MQ=255)
                                                                                                                                                                             aGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACTGAATATTGAACTGGTGGCGGAGGGCGTGGAAACGCAAGAACAGGCGAAGTATTTGCGCCGTCATGGCGTGCATATTTTGCAAGGGTATTTGTACGCACAGCCGAt                                                                                                      >  1:1694327/1‑289 (MQ=255)
                                                                                                                                                                                          aaaCGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACTGAATATTGAACTGGTGGCGGAGGGCGTGGAAACGCAAGAACAGGCGAAGTATTTGCGCCGTCATGGCGTGCATATTTTGCAAGGGTATTTGTACGCACAGCCGATGCCGCTACGTGAt                                                                                         <  1:1239146/289‑1 (MQ=255)
                                                                                                                                                                                                       gCGATTGATGACTTCGGCACCGGCCACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGGCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑TGGGCAAAGACTGAATATTGAACTGGTGGCGGAGGGCGTGGAAACGCAAGAACAGGCGAAGTATTTGCGCCGTCATGGCGTGCATATTTTGCAATGGTATTTTTACGTACAGCCGATGCCGCCACGGGATTTTCCCCAAtg                                                                              >  2:644072/1‑287 (MQ=255)
                                                                                                                                                                                                               tgaCTTCGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACTGAATATTGAACTGGTGGCGGAGGGCGTGGAAACGCAAGAACAGGCGAAGTATTTGCGCCGTCATGGCGTGCATATTTTGCAAGGGTATTTGTACGCACAGCCGATGCCGCTACGTGATTTTCCCAAATGGCTGGCggg                                                                     <  1:1728773/288‑1 (MQ=255)
                                                                                                                                                                                                                     cGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACTGAATATTGAACTGGTGGCg                                                                                                                                                                                            <  2:1778863/163‑1 (MQ=255)
                                                                                                                                                                                                                     cGGCACCGGCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACTGAATATTGAACTGGTGGCg                                                                                                                                                                                            >  1:1778863/1‑163 (MQ=255)
                                                                                                                                                                                                                            ggCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACTGAATATTGAACTGGTGGCGGAGGGCGTGGAAACGCAAGAACAGGCGAAGTATTTGCGCCGTCATGGCGTGCATATTTTGCAAGGGTATTTGTACGCACAGCCGATGCCGCTACGTGATTTTCCCAAATGGCTGGCGGGCAGCCAACcgccgc                                                       <  2:1836999/289‑1 (MQ=255)
                                                                                                                                                                                                                            ggCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACTGAATATTGAACTGGTGGCGGAGGGCGTGGAAACGCAAGAACAGGCGAAGTATTTGCGCCGTCATGGCGTGCATATTTTGCAAGGGTATTTGTACGCACAGCCGATGCCGCTACGTGATTTTCCCAAATGGCTGGCGGGCAGCCAACcgccgc                                                       <  2:511417/289‑1 (MQ=255)
                                                                                                                                                                                                                             gCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCTGGGGGCAAAGACTGAATATTGAACTGGTGGCGGAGGGCGTGGAAACGCAAGAACAGGCGAAGTATTTGCGCCGTCATGGCGTGCATATTGTGCAAGGGATTCTGTCCGCACAGCCCATGCCCCTACGGTACTTTCCCAAAGTGCTCGCTCGCAGCCCAcccacc                                                        >  2:1664515/1‑284 (MQ=255)
                                                                                                                                                                                                                             gCAACAGCTCGTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACTGAATATTGAACTGGTGGCGGGGGGCGTGGAAACGCAAGAACAGGCGAAGTATTTGCGCCGTCATGGCGTGCATATTTTGCAAGGGTATTTGTACGCACAGCCGATGCCCCTACGGGATTTTCCCAAATGGCTGGCGGGCAGGCAAccgcccg                                                       >  2:481159/1‑286 (MQ=255)
                                                                                                                                                                                                                                    ctcgttttCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACTGAATATTGAACTGGTGGCGGAGGGCGTGGAAACGCAAGAACAGGCGAAGTATTTGCGCCGTCATGGCGTGCATATTTTGCAAGGGTATTTGTACGCACAGCCGATGCCGCTACGTGATTTTCCCAAATGGCTGGCGGGCAGCCAACCGCCGcccgcccg                                                <  2:1566112/284‑1 (MQ=255)
                                                                                                                                                                                                                                     tcgttttCCTGGCTTGGAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACTGAATATTGAACTGGTGGCGGAGGGCGTGGAAACGCAAGAACAGGCGAAGTATTTGCGCCGTCATGGCGTGCATATTTTGCAAGGGTATTTGTACGCACAGCCGATGCCGCTACGTGATTTTCCCAAATGGCTGGCGGGCAGCCAACCGCcgcccgcc                                                  <  1:873307/282‑1 (MQ=255)
                                                                                                                                                                                                                                     tcgttttCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATGTCATCATCGCGCT‑GGGGCAAAGACTGAATATTGAACTGGTGGCGGAGGGCGTGGAAACGCAAGAACAGGCGAAGTATTTGCGCCGTCAGGGCGTGCATATTTTGCAAGGGTATTTGTACGCACAGCCGATGCCGCTACGTGATTTTCCCAAATGGCTGGCGGGCAGCCAACCGCcgcccgcc                                                  <  1:124505/282‑1 (MQ=255)
                                                                                                                                                                                                                                     tcgttttCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACTGAATATTGAACTGGTGGCGGAGGGCGTGGAAACGCAAGAACAGGCGAAGTATTTGCGCCGTCATGGCGTGCATATTTTGCAAGGGTATTTGTACGCACAGCCGATGCCGCTACGTGATTTTCCCAAATGGCTGGCGGGCAGCCAACCGCcgcccgcc                                                  <  1:1806121/282‑1 (MQ=255)
                                                                                                                                                                                                                                     tcgttttCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACTGAATATTGAACTGGTGGCGGAGGGCGTGGAAACGCAAGAACAGGCGAAGTATTTGCGCCGTCATGGCGTGCATATTTTGCAAGGGTATTTGTACGCACAGCCGATGCCGCTACGTGATTTTCCCAAATGGCTGGCGGGCAGCCAACCGCcgcccgcc                                                  <  1:1506122/282‑1 (MQ=255)
                                                                                                                                                                                                                                        ttttCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACTGAATATTGAACTGGTGGCGGAGGGCGTGGAAACGCAAGAACAGGCGAAGTATTTGCGCCGTCATGGCGTGCATATTTTGCAAGGGTATTTGTACGCACAGCCGATGCCGCTACGTGATTTTCCCAAATGGCTGGCGGGCAGCCAACCGCCGCCCGCCCGGCATa                                           <  1:1163062/289‑1 (MQ=255)
                                                                                                                                                                                                                                         tttCCTGGCTTGAATCATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACTGAATATTGAACTGGTGGCGGAGGGCGTGGAAACGCAAGAACAGGCGAAGTATTTGCGCCGTCATGGCGTGCATATTTTGCAAGGGTATTTGTACGCACAGCCGATGCCGCTACGTGATTTTCCCAAATGGCTGGCGGGCAGCCAACCGCCGCCCGCCCGGCATaa                                          <  1:719333/289‑1 (MQ=255)
                                                                                                                                                                                                                                         tttCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACGGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACTGAATATTGAACTGGTGGCGGAGGGCGTGGAAACGCAAGAACAGGCGAAGTATTTGCGCCGTCATGGCGTGCATATTTTGCAAGGGTATTTGTACGCACAGCCGATGCCGCTACGTGATTTTCCCAAATGGCTGGCGGGCAGCCAACCGCCGCCCGCCCGGCATa                                           <  1:1572774/288‑1 (MQ=255)
                                                                                                                                                                                                                                         tttCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACTGAATATTGAACTGGTGGCGGAGGGCGTGGAAACGCAAGAACAGGCGAAGTATTTGCGCCGTCATGGCGTGCATATTTTGCAAGGGTATTTGTACGCACAGCCGATGCCGCTACGTGATTTTCCCAAATGGCTGGCGGGCAGCCAACCGCCGCCCGCCCGGCATaa                                          <  2:254317/289‑1 (MQ=255)
                                                                                                                                                                                                                                                 cTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACTGAATATTGAACTGGTGGCGGAGGGCGTGGAAACGCAAGAACAGGCGAAGTATTTGCGCCGTCATGGCGTGCATATTTTGCAAGGGTATTTGTACGCACAGCCGATGCCGCTACGTGATTTTCCCAAATGGCTGGCGGGCAGCCAACCGCCGCCCGCCCGGCATAATGGACata                                  >  1:1530007/1‑289 (MQ=255)
                                                                                                                                                                                                                                                   tGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTATCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGAAAAGACTGAATATTGAACTGGTGGCGGAGGGCGTGGAAACGCAAGAACAGGCGAAGTATTTGCGCCGTCATGGCGTGCCTATTTTGCAAGGGTATTTGTATGCACAGCCGATGCCGCTACGTGATTTTACCAAATGGCTGTCGGGCCGCAACGCGCAGACCGCTCGGCATAACGGACATATc                                >  2:1283391/1‑289 (MQ=255)
                                                                                                                                                                                                                                                    gaatcgttactgccTGACGTGCTGAAAAGTGAGAAGTCATTTACCGCAGATATCGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACTGAATATTGAACTGGTGGCGGAGGGCGTGGAAACGCAAGAACAGGCGAAGTATTTGCGCCGTCATGGCGTGCATATTTTGCAAGGGTATTTGTACGCACAGCCGATGCCGCTACGTGATTTTCACAAATGGCTGGCGGGCAGCCAACCGCCGCCCGCCCGGCATAATGGACATATCa                               <  2:1230067/277‑1 (MQ=255)
                                                                                                                                                                                                                                                     aaaCATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACTGAATATTGAACTGGTGGCGGAGGGCGTGGAAACGCAAGAACAGGCGAAGTATTTGCGCCGTCATGGCGTGCATATTTTGCAAGGGTATTTGTACGCACAGCCGATGCCGCTACGTGATTTTCCCAAATGGCTGGCGGGCAGCCAACCGCCGCCCGCCCGGCATAATGGACATATCa                               >  1:1685685/1‑288 (MQ=255)
                                                                                                                                                                                                                                                      aaCATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACTGAATATTGAACTGGTGGCGGAGGGCGTGGAAACGCAAGAACAGGCGAAGTATTTGCGCCGTCATGGCGTGCATATTTTGCAAGGGTATTTGTACGCACAGCCGATGCCGCTACGTGATTTTCCCAAATGGCTGGCGGGCAGCCAACCGCCGCCCGCCCGGCATAATGGACATATCAc                              <  1:1465160/288‑1 (MQ=255)
                                                                                                                                                                                                                                                      aaCATTACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACTGAATATTGAACTGGTGGCGGAGGGCGTGGAAACGCAAGAACAGGCGAAGTATTTGCGCCGTCATGGCGTGCATATTTTGCAAGGGTATTTGTACGCACAGCCGATGCCGCTACGTGATTTTCCCAAATGGCTGGCGGGCAGCCAACCGCCGCCCGCCCGGCATAATGGACATATCACg                             <  1:1566869/289‑1 (MQ=255)
                                                                                                                                                                                                                                                          ttACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACTGAATATTGAACTGGTGGCGGAGGGCGTGGAAACGCAAGAACAGGCGAAGTATTTGCGCCGTCATGGCGTGCATATTTTGCAAGGGTATTTGTACGCACAGCCGATGCCGCTACGTGATTTTCCCAAATGGCTGGCGGGCAGCCAACCGCCGCCCGCCCGGCATAATGGACATATCACGCCCa                         >  2:235540/1‑289 (MQ=255)
                                                                                                                                                                                                                                                           tACGTCCTGACGTGCTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACt                                                                                                                                                                                                               <  1:661538/106‑1 (MQ=255)
                                                                                                                                                                                                                                                                         cTGAAAATTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACTGAATATTGAACTGGTGGCGGAGGGCGTGGAAACGCAAGAACAGGCGAAGTATTTGCGCCGTCATGGCGTGCATATTTTGCAAGGGTATTTGTACGCACAGCCGATGCCGCCACGTGATTTTCCCAAATGGCTGGCGGGCACACAACCGCCTCCCGACCGGCATAACGGAATTATTACACCCCTTAAGGcgttacgt           >  2:502150/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                             aaaTTGATAAGTCATTTACCGCAGCTATAGGTTCTGACGCGGTTAACTCG‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACTGAATATTGAACTGGTGGCGGAGGGCGTGGAAACGCAAGAACAGGCGAAGTATTTGCGCCGTCATGGCGTGCATATTTTGCAAGGGTATTTGTACGCACAGCCGATGCCGCTACGTGATTTTCCCAAATGGCTGGCGGGCAGCCAACCGCCGCCCGCCCGGCATAATGGACATATCACGCCCATTATGCCGTTACGTTAAc       <  1:307581/288‑1 (MQ=255)
                                                                                                                                                                                                                                                                                        |||                                                                                                                                                                                                                                                                                         
GATGAGTAGTCAGTTTCATGTTGGCATTAACGTCGCACCCAGCCATTTTCGCCGTGGTGTGCTGATAAAAGATCTCAATCAGTACTGGTTTAGCGCTCACCCGATTCAGCAACTGATCCTCGAAATCACCGAACGCGATGCCTTACTGGATGTTGATTATCGGATTGCCCGCGAGCTGCATCGTAAAAACGTCAAACTGGCGATTGATGACTTCGGCACCGGCAACAGCAGCTTTTCCTGGCTTGAAACATTACGTCCTGACGTGCTGAAAATTGATAAGAGTTTTACCGCAGCTATAGGTTCTGACGCGGTTAACAGC‑ACGGTGACCGATATCATCATCGCGCT‑GGGGCAAAGACTGAATATTGAACTGGTGGCGGAGGGCGTGGAAACGCAAGAACAGGCGAAGTATTTGCGCCGTCATGGCGTGCATATTTTGCAAGGGTATTTGTACGCACAGCCGATGCCGCTACGTGATTTTCCCAAATGGCTGGCGGGCAGCCAACCGCCGCCCGCCCGGCATAATGGACATATCACGCCCATTATGCCGTTACGTTAACGCTTA  >  CP042583/1580133‑1580694

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A