Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F210 I1 R1 4930 262.8 3829204 96.6% 3699011 272.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,589,101 3 bp→TGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,589,1010AT99.3% 639.2 / NA 275intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base A (1/1);  new base T (154/118);  total (156/119)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,589,1020CG98.2% 632.3 / NA 275intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/0);  major base G (153/117);  minor base T (3/2);  total (156/119)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01
*CP0425831,589,1030TA99.3% 645.7 / NA 275intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base A (155/118);  minor base C (1/1);  total (156/119)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 275 total aligned reads displayed.

GACCAGAGTTTTAATTTGAAGCAGTTGCACCATGACAGTGCGTATAATCAGGATGAATTGAGTAACCCTTCAACGACGGGGTTACTCAAGATTGAGGAAGGATTATCG‑TTCGGCGACCAGACGAATAATATCTTCGTCTTC‑AACGC‑TTTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGACTACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACGCTTACAACCAAAGACGCAATGTTCATCACGCCACTATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTGTACATCCTGATCGCACATCATGTTGAATACCTGCGCCCAAAGCAGCAAG  >  CP042583/1588822‑1589382
                                                                                                                                                                                                                                                                                          |||                                                                                                                                                                                                                                                                                       
 aCCAGAGTTTTAATTTGAAGCAGTTGCACCATGACAGTGCGTATAATCAGGATGAATTGAGTAACCCTTCAACGACGGGGTTACTCAAGATTGAGGAAGGATTATCG‑TTCGGCGACCAGACGAATAATATCTTCGTCTTC‑AACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCAc                                                                                                                                                                                                                                                                                 >  2:1024275/1‑289 (MQ=255)
                  aaGCAGTTGCACCATGACAGTGCGTATAATCAGGATGAATTGAGTAACCCTTCAACGACGGGGTTACTCAAGATTGAGGAAGGATTATCG‑TTCGGCGACCAGACGAATAATATCTTCGTCTTC‑AACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACcac                                                                                                                                                                                                                                                                >  1:837909/1‑289 (MQ=255)
                       gTTGCACCATGACAGTGCGTATAATCAGGATGAATTGAGTAACCCTTCAACGACGGGGTTACTCAAGATTGAGGAAGGATTATCG‑TTCGGCGACCAGACGAATAATATCTTCGTCTTC‑AACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGAt                                                                                                                                                                                                                                                           >  1:23312/1‑289 (MQ=255)
                       gTTGCAACAAGACAGTGCGTAGAATCAAGATGAATTTAGTAACCCTTCAACGACGGGGTTACTCAAGATTGAGGAAGGATTAGCG‑TTCGGCGACCAGACAAATAATATCTTCGTCTTC‑AACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGa                                                                                                                                                                                                                                                            <  2:1053723/288‑1 (MQ=255)
                        ttGCACCATGACAGTGCGTATAATCAGGATGAATTGAGTAACCCTTCAACGACGGGGTTACTCAAGATTGAGGAAGGATTATCG‑TTCGGCGACCAGACGAATAATATCTTCGTCTTC‑AACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAACAACCACAAGATg                                                                                                                                                                                                                                                          >  2:377305/1‑289 (MQ=255)
                               aTGACAGTGCGTATAATCAGGATGAATTGAGTAACCCTTCAACGACGGGGTTACTCAAGATTGAGGAAGGATTATCG‑TTCGGCGACCAGACGAATAATATCTTCGTCTTC‑AACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGa                                                                                                                                                                                                                                                   <  2:1407506/289‑1 (MQ=255)
                                tGACAGTGCGTATAATCAGGATGAATTGAGTAACCCTTCAACGACGGGGTTACTCAAGATTGAGGAAGGATTATCG‑TTCGGCGACCAGACGAATAATATCTTCGTCTTC‑AACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGAt                                                                                                                                                                                                                                                  >  1:1560406/1‑289 (MQ=255)
                                tGACAGTGCGTATAATCAGGATGAATTGAGTAACCCTTCAACGACGGGGTTACTCAAGATTGAGGAAGGATTATCG‑TTCGGCGACCAGACGAATAATATCTTCGTCTTC‑AACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCACGAt                                                                                                                                                                                                                                                  >  2:620341/1‑289 (MQ=255)
                                 gACAGTGCGTATAATCAGGATGAATTGAGTAACCCTTCAACGACGGGGTTACTCAAGATTGAGGAAGGATTATCG‑TTCGGCGACCAGACGAATAATATCTTCGTCTTC‑AACCG‑ATTTTTGACTCTCAACAGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATa                                                                                                                                                                                                                                                 <  1:1835347/289‑1 (MQ=255)
                                  aCAGTGCGTATAATCAGGATGAATTGAGTAACCCTTCAACGACGGGGTTACTCAAGATTGAGGAAGGATTATCG‑TTCGGCGACCAGACGAATAATATCTTCGTCTTC‑AACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGCTaa                                                                                                                                                                                                                                                >  1:1307507/1‑289 (MQ=255)
                                  aCAGTGCGTATAATCAGGATGAATTGAGTAACCCTTCAACGACGGGGTTACTCAAGATTGAGGAAGGATTATCG‑TTCGGCGACCAGACGAATAATATCTTCGTCTTC‑AACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGACCCCGATaa                                                                                                                                                                                                                                                >  2:1083322/1‑289 (MQ=255)
                                     gTGCGTATAATCAGGATGAATTGAGTAACCCTTCAACGACGGGGTTACTCAAGATTGAGGAAGGATTATCG‑TTCGGCGACCAGACGAATAATATCTTCGTCTTC‑AACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATaagaa                                                                                                                                                                                                                                             >  1:1466530/1‑289 (MQ=255)
                                      tGCGTATAATCAGGATGAATTGAGTAACCCTTCAACGACGGGGTTACTCAAGCTTGAGGAAGGATTATCG‑TTCGGCGACCAGACGAATAATATCTTCGTCTTC‑AACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGCCGTAACAGTGACTTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATaagtag                                                                                                                                                                                                                                            >  1:680921/1‑289 (MQ=255)
                                      tGCGTATAATCAGGATGAATTGAGTAACCCTTCAACGACGGGGTTACTCAAGATTGAGGAAGGATTATCG‑TTCGGCGACCAGACGAATAATATCTTCGTCTTC‑AACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACACACGACGTAACAGTGAATTTTGACGTTTTTGCTGATCAAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACAAACAGCAGAGCCCGATaacaag                                                                                                                                                                                                                                            >  2:1807394/1‑289 (MQ=255)
                                      tGCGTATAATCAGGATGAATTGAGTAACCCTTCAACGACGGGGTTACTCAAGATTGAGGAAGGATTATCG‑TTCGGCGACCAGACGAATAATATCTTCGTCTTC‑AACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATaagaag                                                                                                                                                                                                                                            >  2:1820299/1‑289 (MQ=255)
                                      tGCGTATAATCAGGATGAATTGAGTAACCCTTCAACGACGGGGTTACTCAAGATTGAGGAAGGATTATCG‑TTCGGCGACCAGACGAATAATATCTTCGTCTTC‑AACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATaagaag                                                                                                                                                                                                                                            >  1:215942/1‑289 (MQ=255)
                                      tGCGTATAATCAGGATGAATTGAGTAACCCTTAAACGACGGGGTTACTCAAGATTGAGGAAGGATTATCG‑TTCGGCGACCAGACGAATAATATCTTCGTCTTC‑AACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCACCCCCTCAAGCAGTTCAATCTGTTCGTTAATCCGGTAACTTGCACGCTTGATCACAAACCATAAGATGGACCAGAAaagaag                                                                                                                                                                                                                                            >  2:51417/1‑289 (MQ=255)
                                          tttaATCAGGATGTATTGAGTAGCCCTGCTACGGCGGGGTTACGTAAGATTGAGGAAGACTTATCG‑TTGGGCGACCAGCCGAATAATATCTTCGTCTTC‑AACCG‑ATTTTTGACGCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGAATGTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTGAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAac                                                                                                                                                                                                                                         <  2:1616385/286‑1 (MQ=255)
                                             aaTCAGGATGAATTGAGTAACCCTTCAACGACGGGGTTACTCAAGATTGAGGAAGGATTATCG‑TTCGGCGACCAGACGAATAATATCTTCGTCTTC‑AACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAaccacc                                                                                                                                                                                                                                     <  1:2753/289‑1 (MQ=255)
                                             aaTCAGGATGAATTGAGTAACCCTTCAACGACGGGGTTACTCAAGATTGAGGAAGGATTATCG‑TTCGGCGACCAGACGAATAATATCTTCGTCTTC‑AACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAaccacc                                                                                                                                                                                                                                     <  2:949855/289‑1 (MQ=255)
                                              aTCAGGATGAATTGAGTAACCCTTCAACGACGGGGTTACTCAAGATTGAGGAAGGATTATCG‑TTCGGCGACCAGACGAATAATATCTTCGTCTTC‑AACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAaccacc                                                                                                                                                                                                                                     >  1:88616/1‑288 (MQ=255)
                                              aTCAGGATGAATTGAGTAACCCTTCAACGACGGGGTTACTCAAGATTGAGGAAGGATTATCG‑TTCGGCGACCAGACGAATAATATCTTCGTCTTC‑AACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAAccacca                                                                                                                                                                                                                                    <  1:613471/289‑1 (MQ=255)
                                              aTCAGGATGAATTGAGTAACCCTTCAACGACGGGGTTACTCAAGATTGAGGAAGGATTATCG‑TTCGGCGACCAGACGAATAATATCTTCGTCTTC‑AACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAAccacca                                                                                                                                                                                                                                    <  1:26512/289‑1 (MQ=255)
                                                  ggATGAATTGAGTAACCCTTCAACGACGGGGTTACTCAAGATTGAGGAAGGATTATCG‑TTCGGCGACCAGACGAATAATATCTTCGTCTTC‑AACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACcaccaccga                                                                                                                                                                                                                                >  1:1457387/1‑286 (MQ=255)
                                                     tGAATTAAGTAACCCTTCAACGACGGGGTTACTCAAGATTGAGGAAGGATTATCG‑TTCGGCGACCAGACGAATAATATCTTCGTCTTC‑AACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACcaccaccgata                                                                                                                                                                                                                              <  1:375626/288‑6 (MQ=255)
                                                           gAGTAACCCTTCAACGACGGGGTTACTCAAGATTGAGGAAGGATTATCG‑TTCGGCGACCAGACGAATAATATCTTCGTCTTC‑AACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCaa                                                                                                                                                                                                                       <  2:1457387/289‑1 (MQ=255)
                                                                 cccTTCAACGACGGGGTTACTCAAGATTGAGGAAGGATTATCG‑TTCGGCGACCAGACGAATAATATCTTCGTCTTC‑AACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGAAACAACCAAAGACga                                                                                                                                                                                                                 >  1:1016639/1‑288 (MQ=255)
                                                                    ttCAACGACGGGGTTACTCAAGATTGAGGAAGGATTATCG‑TTCGGCGACCAGACGAATAATATCTTCGTCTTC‑AACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTCTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACAAAAGACGCAAt                                                                                                                                                                                                              >  2:1171874/1‑289 (MQ=255)
                                                                      cAACGACGGGGTTACTCAAGATTGAGGAAGGATTATCG‑TTCGGCGACCAGACGAATAATATCTTCGTCTTC‑AACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGt                                                                                                                                                                                                            >  1:181946/1‑289 (MQ=255)
                                                                      cAACGACGGGGTTACTCAAGATTGAGGAAGGATTATCG‑TTCGGCGACCAGACGAATAATATCTTCGTCTTC‑AACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGt                                                                                                                                                                                                            >  1:690043/1‑289 (MQ=255)
                                                                          gacgGGGTTACTCAAGATTGAGGAAGGATTATCG‑TTCGGCGACCAGACGAATAATATCTTCGTCTTC‑AACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTtcat                                                                                                                                                                                                        <  2:609684/289‑1 (MQ=255)
                                                                           acgGGGTTACTCAAGATTGAGGAAGGATTATCG‑TTCGGCGACCAGACGAATAATATCTTCGTCTTC‑AACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGTTGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTtcatc                                                                                                                                                                                                       >  1:600258/1‑289 (MQ=255)
                                                                            cgGGGTTACTCAAGATTGAGGAAGGATTATCG‑TTCGGCGACCAGACGAATAATATCTTCGTCTTC‑AACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAAccacca                                                                                                                                                                                                                                    <  1:293892/259‑1 (MQ=255)
                                                                            cgGGGTTACTCAAGATTGAGGAAGGATTATCG‑TTCGGCGACCAGACGAATAATATCTTCGTCTTC‑AACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAAccacca                                                                                                                                                                                                                                    >  2:293892/1‑259 (MQ=255)
                                                                                  atcTCAAGATTAAGAACGGATTATCG‑TTCGGCGACCAGACAATTAATCTCTTCGTCTTA‑AACCG‑ATTTTTGAATCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGcct                                                                                                                                                                                                 <  2:818097/286‑2 (MQ=255)
                                                                                        agtttGAGGAAGCATT‑TCGCTTCGGCGACCAGACTACTATTATCCTCGTCTTC‑AACCG‑TTTTTTGCATCTCTCAGGTCTTTTTCTCTGCTTTCTCTGGTTTGTTTGCTTCGCACAAACGTCGTAACATTGCATTTTGACGTTTTTGCTGATCCCGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTTAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAACGACGCAATGTTCATCACGcctgaattta                                                                                                                                                                                          <  2:1572292/286‑9 (MQ=255)
                                                                                         gATTGAGGAAGGATTATCG‑TTCGGCGACCAGACGAATAATATCTTCGTCTTC‑AACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTAc                                                                                                                                                                                         >  1:633319/1‑289 (MQ=255)
                                                                                         gATTGAGGAAGGATTATCG‑TTCGGCGACCAGACGAATAATATCTTCGTCTTC‑AACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTAc                                                                                                                                                                                         >  2:1637708/1‑289 (MQ=255)
                                                                                         gATTGAGGAAGGATTATCG‑TTCGGCGACCAGACGAATAATATCTTCGTCTTC‑AACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTAc                                                                                                                                                                                         >  2:1876624/1‑289 (MQ=255)
                                                                                         gATTGAGGAAGGATTATCG‑TTCGGCGACCAGACGAATAATATCTTCGTCTTC‑AACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTAc                                                                                                                                                                                         >  1:960781/1‑289 (MQ=255)
                                                                                              aggaaggaTTATCG‑TTCGGCGACCAGACGAATAATATCTTCGTCTTC‑AACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGCATTTACAACt                                                                                                                                                                                     >  1:1346886/1‑288 (MQ=255)
                                                                                              aggaaggaTTATCG‑TTCGGCGACCAGACGAATAATATCTTCGTCTTC‑AACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACt                                                                                                                                                                                     >  1:1695904/1‑288 (MQ=255)
                                                                                                        aTCG‑TTCGGCGACCAGACGAATAATATCTTCGTCTTC‑AACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTc                                                                                                                                                                          >  1:1194799/1‑289 (MQ=255)
                                                                                                          cG‑TTCGGCGACCAGACGAATAATATCTTCGTCTTC‑AACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTcac                                                                                                                                                                        <  2:331401/289‑1 (MQ=255)
                                                                                                          cG‑TTCGGCGACCAGACGAATAATATCTTCGTCTTC‑AACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTcac                                                                                                                                                                        <  1:658237/289‑1 (MQ=255)
                                                                                                          cG‑TTCGGCGACCAGACGAATAATATCTTCGTCTTC‑AACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTcac                                                                                                                                                                        <  1:1394409/289‑1 (MQ=255)
                                                                                                          cG‑TTCGGCGACCAGACGAATAATATCTTCGTCTTC‑AACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTcac                                                                                                                                                                        <  1:1642841/289‑1 (MQ=255)
                                                                                                              tCGGCGACCAGACGAATAATATCTTCGTCTTC‑AACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTcacca                                                                                                                                                                      <  1:1894590/288‑1 (MQ=255)
                                                                                                              tCGGCGACCAGACGAATAATATCTTCGTCTTC‑AACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTcacca                                                                                                                                                                      <  1:1223552/288‑1 (MQ=255)
                                                                                                              tCGGCGACATGAATAATAATATCTTCGTCTTC‑‑ACGCGATTTTTGACTCTCAACGGTCTTTTTTTCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTcacca                                                                                                                                                                      <  2:247423/288‑1 (MQ=255)
                                                                                                               cGGCGACCAGACGAATAATATCTTCGTCTTC‑AACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTcaccac                                                                                                                                                                     >  1:1530810/1‑288 (MQ=255)
                                                                                                                ggCGACCAGACGAATAATATCTTCGTCTTC‑AACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCaccacc                                                                                                                                                                    >  1:1796925/1‑288 (MQ=255)
                                                                                                                     ccAGACGAATAATATCTTCGTCTTC‑AACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATAACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTCAg                                                                                                                                                              >  1:1090623/1‑289 (MQ=255)
                                                                                                                           gAATAATATCTTCGTCTTC‑AACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAgg                                                                                                                                                        <  2:215942/289‑1 (MQ=255)
                                                                                                                            agtaataTCTTCTTCTTCAAACGA‑TTTATGGA‑TCTCATCAGTCTTTTGATCTGCTTTCTCTGTTTCGTTTGCTTCGCACAAGCGACGTAGCATAGCATTTTGACGTTTTTGCTGGTCCAGCAACGCCTCAATCATGTCAATCTATTCGTTAGTCCGTGAACTGACACGATTGATAAAAAACCACAAGAATGGCCCGATAGGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGgc                                                                                                                                                       <  2:1888172/287‑1 (MQ=255)
                                                                                                                                   tCTTCGTCTTC‑AACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAgg                                                                                                                                                        >  1:787844/1‑281 (MQ=255)
                                                                                                                                   tCTTCGTCTTC‑AACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAgg                                                                                                                                                        <  2:787844/281‑1 (MQ=255)
                                                                                                                                   tCTTCGTCTTC‑AACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCCTTCATTTCACCACCTCAGAGAAGAGGCGCCAt                                                                                                                                                  >  2:1347074/1‑287 (MQ=255)
                                                                                                                                       cGTCTTC‑AACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTcac                                                                                                                                                                        >  2:44148/1‑261 (MQ=255)
                                                                                                                                       cGTCTTC‑AACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTcac                                                                                                                                                                        <  1:44148/261‑1 (MQ=255)
                                                                                                                                       cGTCTTC‑AACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTAc                                                                                                                                             >  1:756712/1‑288 (MQ=255)
                                                                                                                                        gTCTTC‑AACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCa                                                                                                                                           <  2:638879/289‑1 (MQ=255)
                                                                                                                                          gttttaaaccgatgtttGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCa                                                                                                                                           <  2:735656/275‑1 (MQ=255)
                                                                                                                                               caaccgatttttGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTcac                                                                                                                                                                        <  2:673548/248‑1 (MQ=255)
                                                                                                                                                   tgatttttGACTCATAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCATCGAACAAACGACGTAGCAGTGCATTTTGACGTCTTTGCTGATCCAGCAACGCCTCAAGCAGTTCGATCTTTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAGGAAGAACCACCACCGATACAACCAAAGACGCAGTGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGgag                                                                                                                                  <  2:241866/286‑1 (MQ=255)
                                                                                                                                                     atttttGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGagag                                                                                                                                >  1:735316/2‑289 (MQ=255)
                                                                                                                                                                                 tGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGgcg                                                                                                                                                      <  1:1030029/239‑1 (MQ=255)
                                                                                                                                                                                   cTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAgg                                                                                                                                                        >  1:1860952/1‑235 (MQ=255)
                                                                                                                                                                                   cTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAgg                                                                                                                                                        <  2:1860952/235‑1 (MQ=255)
                                                                                                                                                                                       ctctGGTTCGTTTGCTTCGCCCAAACGACTTAACCGTCCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATcacc                                                                                              <  2:756712/289‑1 (MQ=255)
                                                                                                                                                                                       ctctGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATcacc                                                                                              <  2:633319/289‑1 (MQ=255)
                                                                                                                                                                                               cGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTTCTGGATAGGCACACAATTTATTGCAGAAAACATTATAAcaccaccgaaaa                                                                                      >  2:1656458/1‑283 (MQ=255)
                                                                                                                                                                                                 tttGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCCACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGCTCAACACGCCTGAATTTACAACTACGTTCATCTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGACAGGAATAAAACATAGTGCTGAAAAAATGATATCCACAAGGGATaaa                                                                                    >  2:1585480/1‑289 (MQ=255)
                                                                                                                                                                                                      ttCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACTCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGt                                                                               >  1:350922/1‑289 (MQ=255)
                                                                                                                                                                                                      ttCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGATAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGt                                                                               >  2:1465157/1‑289 (MQ=255)
                                                                                                                                                                                                        cGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTa                                                                             <  1:187079/289‑1 (MQ=255)
                                                                                                                                                                                                          cacaAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTTCAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAAt                                                                           <  2:1279105/289‑1 (MQ=255)
                                                                                                                                                                                                                       aCAGTGCATTTTGCCGTTTTTGCTTATCCAGCAAGGCATAAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCg                                                              <  2:695992/289‑1 (MQ=255)
                                                                                                                                                                                                                           tGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGa                                                          >  2:1536052/1‑289 (MQ=255)
                                                                                                                                                                                                                           tGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGa                                                          >  2:1224995/1‑289 (MQ=255)
                                                                                                                                                                                                                            gCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGaa                                                         <  1:49320/289‑1 (MQ=255)
                                                                                                                                                                                                                                  tGACGTTTCTGCTGATCCCGCAACGCCTCAAGCAGTTCAATCGGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCAATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTg                                                   <  2:526321/289‑1 (MQ=255)
                                                                                                                                                                                                                                     cGTTTTTGCTGAACCAACAACGCCTCAAACAGTTCAATCTGTTCGTTAGTCCGTTAACTGGCACGATTACTAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTGTa                                                 <  2:1160220/288‑1 (MQ=255)
                                                                                                                                                                                                                                         tttGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTGTACAt                                              >  2:859172/1‑287 (MQ=255)
                                                                                                                                                                                                                                         tttGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACAACGGGATAAACTGGTTAATGGCACAAATTCCGCTTAAAAATTGTACAt                                              >  1:1437448/1‑287 (MQ=255)
                                                                                                                                                                                                                                                   cAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTGTACATCCTGATCGcaca                                  <  1:38934/289‑1 (MQ=255)
                                                                                                                                                                                                                                                   cAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTGTACATCCTGATCGcaca                                  <  1:970185/289‑1 (MQ=255)
                                                                                                                                                                                                                                                      cAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTGTACATCCTGATCGCAcatca                               >  2:1056842/1‑289 (MQ=255)
                                                                                                                                                                                                                                                      cAACGCCTCAAGCAGTTCAATCTGTTCGTCAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTACGCTGAAAAATTGTAAATCCTGATCGCCcatca                               >  2:39759/1‑289 (MQ=255)
                                                                                                                                                                                                                                                       aaCGCCTCAATCAGTTCTATCTGTTGGTTAGTCCGTGAACTGGCACGATTGATAAAAAAACACAAGATGCACCCGATAAGAAGAACCACCATCGATATAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCGGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTGTACATCCTGATCGCAcatc                                <  1:1160612/287‑1 (MQ=255)
                                                                                                                                                                                                                                                       aaCGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTGTACATCCTGATCGCAcatc                                <  1:1650147/287‑1 (MQ=255)
                                                                                                                                                                                                                                                          gCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTGTACATCCTGATCGCAcatc                                <  1:188078/284‑1 (MQ=255)
                                                                                                                                                                                                                                                             tcaataaGTTCAATCTGTTCGTTAGTCCGTGAACTGGAAAGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTGTACATCCTGATCGCACATCATGTTGaa                        <  2:726644/283‑1 (MQ=255)
                                                                                                                                                                                                                                                                     ttCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTGTACATCCTGATCGCACATCATGTTGAATACCTgc                 >  1:1525902/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                              ttCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTGTACATCCTGATCGCACATCATGTTGAATACCTGCGCCCAAagca       >  1:708219/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                               tCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAACAAATGATATCACCACGGGATAAACTGGTTAATGGCACCAATTCCGCTGAAAAATTGTACCTCCTGATCGCCCATCATGTTGAATACCTGCGCCCAAcgca       >  2:496500/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                               tCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTGTACATCCTGATCGCACATCATGTTGAATACCTGCGCCCAAagca       >  2:1697006/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                                   tAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTGTACATCCTGATCGCACATCATGTTGAATACCTGCGCCCAAAGCagcaag  <  2:708219/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                                   tAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTGTACATCCTGATCGCACATCATGTTGAATACCTGCGCCCAAAGCagcaag  <  1:161012/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                                   tAGTCCCAGAACTGGCACGATTGATAAAAAACCACAAGATTAGCACGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTGTACATCCTGATCGCACATCATGTTGAATACCTGCGCCCAAAGCagcaag  <  2:1755571/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                                          |||                                                                                                                                                                                                                                                                                       
GACCAGAGTTTTAATTTGAAGCAGTTGCACCATGACAGTGCGTATAATCAGGATGAATTGAGTAACCCTTCAACGACGGGGTTACTCAAGATTGAGGAAGGATTATCG‑TTCGGCGACCAGACGAATAATATCTTCGTCTTC‑AACGC‑TTTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTGCATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGACTACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACGCTTACAACCAAAGACGCAATGTTCATCACGCCACTATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTGTACATCCTGATCGCACATCATGTTGAATACCTGCGCCCAAAGCAGCAAG  >  CP042583/1588822‑1589382

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A