Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F210 I1 R1 4930 262.8 3829204 96.6% 3699011 272.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,589,158 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,589,1580GC99.6% 613.4 / NA 258intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/0);  major base C (132/125);  minor base A (0/1);  total (132/126)
Fisher's exact test for biased strand distribution p-value = 4.88e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,589,1590CG99.2% 600.2 / NA 258intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/0);  major base G (131/125);  minor base A (1/1);  total (132/126)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,589,1600TA99.6% 608.4 / NA 258intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base A (132/124);  minor base G (0/1);  total (132/126)
Fisher's exact test for biased strand distribution p-value = 4.86e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 258 total aligned reads displayed.

ATTGAGTAACCCTTCAACGACGGGGTTACTCAAGATTGAGGAAGGATTATCGTTCGGCGACCAGACGAATAATATCTTCGTCTTCAACGC‑TTTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTG‑CATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGACTACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACGCTTACAACCAAAGACGCAATGTTCATCACGCCACTATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTGTACATCCTGATCGCACATCATGTTGAATACCTGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAAT  >  CP042583/1588878‑1589435
                                                                                                                                                                                                                                                                                          |||                                                                                                                                                                                                                                                                                   
     gTAACCCTTCAACGACGGGGTTACTCACGATTGAGGAAGGATTATCGTTCGGCGACCAGACGAATAATATCTTCGTCTTCAACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTG‑CATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGCTAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAg                                                                                                                                                                                                                                                                          >  2:1650147/1‑289 (MQ=255)
         cccTTCAACGACGGGGTTACTCAAGATTGAGGAAGGATTATCGTTCGGCGACCAGACGAATAATATCTTCGTCTTCAACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTG‑CATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGc                                                                                                                                                                                                                                                                      >  2:1803836/1‑289 (MQ=255)
         cccTTCAACGACGGGGTTACTCAAGATTGAGGAAGGATTATCGTTCGGCGACCAGACGAATAATATCTTCGTCTTCAACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTG‑CATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGAAACAACCAAAGACga                                                                                                                                                                                                                                                                      >  1:1016639/1‑288 (MQ=255)
            ttCAACGACGGGGTTACTCAAGATTGAGGAAGGATTATCGTTCGGCGACCAGACGAATAATATCTTCGTCTTCAACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTCTGCTTCGCACAAACGACGTAACAGTG‑CATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACAAAAGACGCAAt                                                                                                                                                                                                                                                                   >  2:1171874/1‑289 (MQ=255)
              cAACGACGGGGTTACTCAAGATTGAGGAAGGATTATCGTTCGGCGACCAGACGAATAATATCTTCGTCTTCAACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTG‑CATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGt                                                                                                                                                                                                                                                                 >  1:181946/1‑289 (MQ=255)
              cAACGACGGGGTTACTCAAGATTGAGGAAGGATTATCGTTCGGCGACCAGACGAATAATATCTTCGTCTTCAACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTG‑CATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGt                                                                                                                                                                                                                                                                 >  1:690043/1‑289 (MQ=255)
                  gacgGGGTTACTCAAGATTGAGGAAGGATTATCGTTCGGCGACCAGACGAATAATATCTTCGTCTTCAACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTG‑CATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTtcat                                                                                                                                                                                                                                                             <  2:609684/289‑1 (MQ=255)
                    cgGGGTTACTCAAGATTGAGGAAGGATTATCGTTCGGCGACCAGACGAATAATATCTTCGTCTTCAACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTG‑CATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCAACACCGATACAACCAAAGaaccaaacttcctc                                                                                                                                                                                                                                                            >  2:1139758/1‑275 (MQ=255)
                                      aggaaggaTTATCGTTCGGCGACCAGACGAATAATATCTTCGTCTTCAACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTG‑CATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCATGAGTGATAAAAAACCACAAGATAAGCCCGATAAGAAGAACAACCACCGACACAACCAAAAAAGCAATGTTCATAACGcctgaattacaaaaa                                                                                                                                                                                                                                          >  2:1307439/1‑275 (MQ=255)
                                      aggaaggaTTATCGTTCGGCGACCAGACGAATAATATCTTCGTCTTCAACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTG‑CATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGCATTTACAACt                                                                                                                                                                                                                                          >  1:1346886/1‑288 (MQ=255)
                                      aggaaggaTTATCGTTCGGCGACCAGACGAATAATATCTTCGTCTTCAACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTG‑CATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACt                                                                                                                                                                                                                                          >  2:49320/1‑288 (MQ=255)
                                      aggaaggaTTATCGTTCGGCGACCAGACGAATAATATCTTCGTCTTCAACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTG‑CATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACt                                                                                                                                                                                                                                          >  2:187079/1‑288 (MQ=255)
                                      aggaaggaTTATCGTTCGGCGACCAGACGAATAATATCTTCGTCTTCAACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTG‑CATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAAACAAAGACGCAATGTTCATCACGCCTGAATTTACAACt                                                                                                                                                                                                                                          >  2:766132/1‑288 (MQ=255)
                                           ggaTTATCGTTCGGCGACCAGACGAATAATATCTTCGTCTTCAACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTG‑CATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTc                                                                                                                                                                                                                                    >  1:735874/1‑289 (MQ=255)
                                           ggaTTATCGTTCGGCGACCAGACGAATAATATCTTCGTCTTCAACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTG‑CATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTc                                                                                                                                                                                                                                    >  2:224929/1‑289 (MQ=255)
                                           ggaTTATCGTTCGGCGACCAGACGAATAATATCTTCGTCTTCAACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTG‑CATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAAACGCAATGTTAATCAAGCCTGAATTTACAAATTCGTTc                                                                                                                                                                                                                                    >  2:161740/1‑289 (MQ=255)
                                           ggaTTATCGTTCGGCGACCAGACGAATAATATCTTCGTCTTCAACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGT‑ACAGTG‑CATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCa                                                                                                                                                                                                                                   >  1:967536/1‑289 (MQ=255)
                                                aTCGTTCGGCGACCAGACGAATAATATCTTCGTCTTCAACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTG‑CATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTc                                                                                                                                                                                                                               >  1:67803/1‑289 (MQ=255)
                                                aTCGTTCGGCGACCAGACGAATAATATCTTCGTCTTCAACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTG‑CATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTc                                                                                                                                                                                                                               >  1:371951/1‑289 (MQ=255)
                                                  cGTTCGGCGACCAGACGAATAATATCTTCGTCTTCAACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTG‑CATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTcac                                                                                                                                                                                                                             <  1:1166271/289‑1 (MQ=255)
                                                  cGTTCGGCGACCAGACGAATAATATCTTCGTCTTCAACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTG‑CATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTcac                                                                                                                                                                                                                             <  2:1560406/289‑1 (MQ=255)
                                                    ttCGGCGACCAGACGAATAATATCTTCGTCTTCAACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTG‑CATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTcacca                                                                                                                                                                                                                           <  2:1892460/289‑1 (MQ=255)
                                                     tCGGCGACCAGACGAATAATATCTTCGTCTTCAACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTG‑CATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTcacca                                                                                                                                                                                                                           <  1:1894590/288‑1 (MQ=255)
                                                     tCGGCGACCAGACGAATAATATCTTCGTCTTCAACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTG‑CATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTcacca                                                                                                                                                                                                                           <  1:1223552/288‑1 (MQ=255)
                                                     tCGGCGACATGAATAATAATATCTTCGTCTTC‑ACGCGATTTTTGACTCTCAACGGTCTTTTTTTCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTG‑CATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTcacca                                                                                                                                                                                                                           <  2:247423/288‑1 (MQ=255)
                                                       ggCGACCAGACGAATAATATCTTCGTCTTCAACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTG‑CATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCaccacc                                                                                                                                                                                                                         >  1:1796925/1‑288 (MQ=255)
                                                        gcgcCCAGCCAAATAATATCTTCGTCTTTAACCG‑ATTTTTGACTCTCACCGGTTTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTG‑CATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACct                                                                                                                                                                                                                        <  2:507899/288‑1 (MQ=255)
                                                            ccAGACGAATAATATCTTCGTCTTCAACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTG‑CATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATAACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTCAg                                                                                                                                                                                                                   >  1:1090623/1‑289 (MQ=255)
                                                                     taataTCTTCGTCTTCAACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTG‑CATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGgcgc                                                                                                                                                                                                          <  1:906952/289‑1 (MQ=255)
                                                                        tatCTTCGTCTTCAACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTG‑CATTTTGGCGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTag                                                                                                                                                                                                                <  1:1558603/280‑1 (MQ=255)
                                                                          tCTTCGTCTTCAACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTG‑CATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACg                                                                                                                                                                                                                                                                       >  1:76026/1‑223 (MQ=255)
                                                                          tCTTCGTCTTCAACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTG‑CATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAgg                                                                                                                                                                                                             >  1:787844/1‑281 (MQ=255)
                                                                          tCTTCGTCTTCAACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTG‑CATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAgg                                                                                                                                                                                                             <  2:787844/281‑1 (MQ=255)
                                                                           cTTCGTCTTCAACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTG‑CATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCt                                                                                                                                                                                                    >  1:1438371/1‑289 (MQ=255)
                                                                             tCGTCTTCAACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTG‑CATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGGTCATTTCACCACCTCTGAGTAAAGgcgacatgcta                                                                                                                                                                                                   >  2:656079/1‑280 (MQ=255)
                                                                              cGTCTTCAACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTG‑CATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTcac                                                                                                                                                                                                                             <  1:44148/261‑1 (MQ=255)
                                                                                tCTTCAACCG‑ATTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTG‑CATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTAcc                                                                                                                                                                                                 >  1:1279105/1‑287 (MQ=255)
                                                                                      aaccgatttttGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTG‑CATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCActgctg                                                                                                                                                                                          >  1:1160220/7‑289 (MQ=255)
                                                                                           atttttGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTG‑TATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGagag                                                                                                                                                                                     >  1:857073/2‑289 (MQ=255)
                                                                                           atttttGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTG‑CATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGagag                                                                                                                                                                                     >  1:1699077/2‑289 (MQ=255)
                                                                                             ttttGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTG‑CATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGga                                                                                                                                                                                   <  1:651048/289‑1 (MQ=255)
                                                                                                      tcAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTG‑CATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTcac                                                                                                                                                                                                                             <  1:1879598/238‑1 (MQ=255)
                                                                                                      tcAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTG‑CATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGCGTAGAGGCGCTATCCTACCACTGCTGGAGAGGAAGAAAATcc                                                                                                                                                                          >  2:1113017/1‑288 (MQ=255)
                                                                                                               tttttATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTG‑CATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGGGAGGAAGAAAATCTAGTGCTGaa                                                                                                                                                                 >  2:1055686/1‑289 (MQ=255)
                                                                                                                ttttATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTG‑CATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGaaa                                                                                                                                                                >  1:285338/1‑289 (MQ=255)
                                                                                                                 tttATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTG‑CATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGaaaa                                                                                                                                                               <  2:1457912/289‑1 (MQ=255)
                                                                                                                    ttttGCTTTTTTTGGTTCGTTTGCTTCGCACAAACGACGTAACCGTG‑CATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAAt                                                                                                                                                            <  2:690043/286‑1 (MQ=255)
                                                                                                                       tGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTG‑CATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGgcg                                                                                                                                                                                                           >  2:1030029/1‑239 (MQ=255)
                                                                                                                       tGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTG‑CATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGgcg                                                                                                                                                                                                           <  1:1030029/239‑1 (MQ=255)
                                                                                                                         cTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTG‑CATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAgg                                                                                                                                                                                                             >  1:1860952/1‑235 (MQ=255)
                                                                                                                             ttctTGTTCGTTTGCTTCGCACAAACGACGTAA‑ACTGTCATTTTGGCGTTTTTGCTGATCCAGCCACGCCTAAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATcacc                                                                                                                                                   <  2:1256274/288‑1 (MQ=255)
                                                                                                                             ctctGGTTCGTTTGCTTCGCACAAACGACGTAACAGTG‑CATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATcacc                                                                                                                                                   <  2:633319/289‑1 (MQ=255)
                                                                                                                                   ttCGTTTGCTTCGCACTAACGACGTAAAAGTT‑CCTTTTGACGTTTTAGCTGATCCAGCAACGACCAAAGCAGTTCGATCTGTTCGTTAGTCAGTGCACTGGCACAATTGATAAAAAACCACAAGATGAGCTCGATAAGAACAGCCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACggg                                                                                                                                              <  2:32663/288‑1 (MQ=255)
                                                                                                                                   ttCGTTTGCTTCGCACAAACGACGTAACAGTG‑CATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGCCGCTATCCTACCACTGCTGGAGCGGAAGAAAACCTAGGTCGGAAAAAATGATATAACAATGGGa                                                                                                                                             >  2:1786704/1‑289 (MQ=255)
                                                                                                                                       tttGCTTCGCACAAACGACGTAACAGTG‑CATTTTGACGTTTTTGCTGATCCAGCCACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGCTCAACACGCCTGAATTTACAACTACGTTCATCTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGACAGGAATAAAACATAGTGCTGAAAAAATGATATCCACAAGGGATaaa                                                                                                                                         >  2:1585480/1‑289 (MQ=255)
                                                                                                                                        ttGCTTCGCACAAACGACGTAACAGTG‑CATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATaaa                                                                                                                                         <  1:212224/288‑1 (MQ=255)
                                                                                                                                        ttGCTTCGCACAAACGACGTAACAGTG‑CATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAAc                                                                                                                                        <  2:857073/289‑1 (MQ=255)
                                                                                                                                            ttCGCACAAACGACGTAACAGTG‑CATTTTGACGTTTTTGCTGATCCAGCAACTCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGt                                                                                                                                    >  1:350922/1‑289 (MQ=255)
                                                                                                                                              cGCACAAACGACGTAACAGTG‑CATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTa                                                                                                                                  <  1:187079/289‑1 (MQ=255)
                                                                                                                                                                 tG‑CATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGa                                                                                                               >  1:726644/1‑289 (MQ=255)
                                                                                                                                                                  g‑CATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGaa                                                                                                              <  1:49320/289‑1 (MQ=255)
                                                                                                                                                                    cATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGaaa                                                                                                             >  2:749041/1‑289 (MQ=255)
                                                                                                                                                                     aTTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGaaaa                                                                                                            <  1:1465157/289‑1 (MQ=255)
                                                                                                                                                                       tttGACGTTTTTGCTGATCCAGCAACTCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAAt                                                                                                          <  2:350922/289‑1 (MQ=255)
                                                                                                                                                                         tGACCTTTTTGCTAATCCAGCAACCACTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTTATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTg                                                                                                        <  2:735316/289‑1 (MQ=255)
                                                                                                                                                                                 ttGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTGTACATCCt                                                                                                <  1:271455/289‑1 (MQ=255)
                                                                                                                                                                                          cAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTGTACATCCTGATCGcaca                                                                                       <  1:38934/289‑1 (MQ=255)
                                                                                                                                                                                          cAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTGTACATCCTGATCGcaca                                                                                       <  1:1529628/289‑1 (MQ=255)
                                                                                                                                                                                             cAACGCCTCAAGCAGTTCAATCTGTTCGTCAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTACGCTGAAAAATTGTAAATCCTGATCGCCcatca                                                                                    >  2:39759/1‑289 (MQ=255)
                                                                                                                                                                                              aaCGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTGTACATCCTGATCGCAcatc                                                                                     <  1:1650147/287‑1 (MQ=255)
                                                                                                                                                                                                 gCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTGTACATCCTGATCGCAcatc                                                                                     >  2:188078/1‑284 (MQ=255)
                                                                                                                                                                                                 gCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTGTACATCCTGATCGCACATCATGtt                                                                                >  2:1207075/1‑289 (MQ=255)
                                                                                                                                                                                                          aGTTCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTGTACATCCTGATCGCACATCATGTTGAATACCt                                                                        <  2:1532930/288‑1 (MQ=255)
                                                                                                                                                                                                             tCAATCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTGTACATCCTGATCGCACATCATGTTGAATACCTgcg                                                                     >  1:1197320/1‑288 (MQ=255)
                                                                                                                                                                                                                 tCTGTTCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTGTACATCCTGATCGCACATCATGTTGAATACCTGCGCCCaa                                                                >  1:1369332/1‑289 (MQ=255)
                                                                                                                                                                                                                     ttCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTGTACATCCTGATCGCAcatc                                                                                     >  2:1493010/1‑264 (MQ=255)
                                                                                                                                                                                                                      tCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTGTACATCCTGATCGCACATCATGTTGAATACCTGCGCCCAAagca                                                            >  2:1697006/1‑288 (MQ=255)
                                                                                                                                                                                                                      tCGTTAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGAACAAATTCCGCTGAAACATTGTACATCCTGATCGCACATCATGTTGAATATCTGCGCCCAAagca                                                            >  1:168963/1‑288 (MQ=255)
                                                                                                                                                                                                                         ttagtccgtgacatGGCACGATTGATAAAAAACCACAAGATTAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTGTACATCCTGATCGCACATCATGTTGAATACCTGCGCCCAAAgcagca                                                         <  2:88616/275‑1 (MQ=255)
                                                                                                                                                                                                                          tattcccttaactGGAACGATTGATAAAAAACCACAAGATAAGCCCGATAAGAAGAACCACCACCGATACAACCCAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTGTACATCCTGATCGCACATCATGTTGAATACCTGCGCCCAAAGCagcaag                                                       <  2:828239/279‑1 (MQ=255)
                                                                                                                                                                                                                          tAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTGTACATCCTGATCGCACATCATGTTGAATACCTGCGCCCAAAGCagcaag                                                       <  1:625626/289‑1 (MQ=255)
                                                                                                                                                                                                                          tAGTCCGTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTGTACATCCTGATCGCACATCATGTTGAATACCTGCGCCCAAAGCagcaag                                                       <  2:708219/289‑1 (MQ=255)
                                                                                                                                                                                                                             tccgtgaactGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTGTACATCCTGATCGCACATCATGTTGAATACCTTCGCCCAAAGCAgcaagcaa                                                    >  1:1078981/8‑289 (MQ=255)
                                                                                                                                                                                                                               cgtgaactGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATAGCACAACGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTGTACATCATGATCGCACATCATGTTAAATACCTTCTCCCAAAGCAacaagcaac                                                   >  2:1846967/6‑287 (MQ=255)
                                                                                                                                                                                                                               cgtgaactGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCGGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTGTACATCCTGACCGCACATCATGTTGAATACCTGCGCCCAAAGAAGcaagccag                                                   >  2:1656765/6‑288 (MQ=255)
                                                                                                                                                                                                                                      tGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTGTACATCCTGATCGCACATCATGTTGAATACCTGCGCCCAAAGCAGCAAGCAAGCCAAcacc                                           >  2:562265/1‑289 (MQ=255)
                                                                                                                                                                                                                                       ggCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTGTACATCCTGATCGCACATCATGTTGAATACCTGCGCCCAAAGCAGCAAGCAAGCCAGcacc                                           >  1:701116/1‑288 (MQ=255)
                                                                                                                                                                                                                                       ggCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTGTACATCCTGATCGCACATCATGTTGAATACCTGCGCCCAAAGCAGCAAGCAAGCCAAcacc                                           >  1:1568128/1‑288 (MQ=255)
                                                                                                                                                                                                                                        gCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTGTACATCCTGATCGCACATCATGTTGAATACCTGCGCCCAAAGCAGCAAGCAAGCCAAcaccac                                         >  1:1836889/1‑289 (MQ=255)
                                                                                                                                                                                                                                        gCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTGTACATCCTGATCGCACATCATGTTGAATACCTGCGCCCAAAGCAGCAAGCAAGCCAAcaccac                                         >  2:729471/1‑289 (MQ=255)
                                                                                                                                                                                                                                         cACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTGTACATCCTGATCGCACATCATGTTGAATACCTGCGCCCAAAGCAGCAAGCAAGCCAAcaccac                                         <  1:1637708/288‑1 (MQ=255)
                                                                                                                                                                                                                                              ttGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCTATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTGTACATCCTGATCGCACATCATGTTGAATACCTGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACaa                                    >  2:281014/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                    gCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTGTACATCCTGATCGCACATCATGTTGAATACCTGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACAACCCATCGAAACttt             >  1:1508848/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                      ccGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTGTACATCCTGATCGCACATCATGTTGAATACCTGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACttttt           <  2:67803/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                      ccGATAAGAAGAAACACCACCGGTCCAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTGTACATCCTGATCGCACATCATGTTGAATACCTGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACtttt            <  2:416205/288‑1 (MQ=255)
                                                                                                                                                                                                                                                                      cagATAAGACGACCAACCACAACTACAACAAAAGACTCAATGTTCATCACGCCTGAATTTACAACGTCGTTCATTCCACCGCCTCTGAGTAGAGGCGCTATTCTACCGCTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTGTACATCCTGATCGCACATCATGTTGAATACCTGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACttttt           <  2:500763/287‑1 (MQ=255)
                                                                                                                                                                                                                                                                            agaagaACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTGTACATCCTGATCGCACATCATGTTGAATACCTGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTcc     <  2:1369332/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                               agaaCCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTGTACATCCTGATCGCACATCATGTTGAATACCTGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAAt  <  1:562265/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                                   ccaccaCCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTGTACATCCTGATCGCACATCATGTTGAATACCTGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAAc                <  1:141238/271‑1 (MQ=255)
                                                                                                                                                                                                                                                                                   ccaccaCCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTGTACATCCTGATCGCACATCATGTTGAATACCTGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCAACGAAAc                >  2:141238/1‑271 (MQ=255)
                                                                                                                                                                                                                                                                                          |||                                                                                                                                                                                                                                                                                   
ATTGAGTAACCCTTCAACGACGGGGTTACTCAAGATTGAGGAAGGATTATCGTTCGGCGACCAGACGAATAATATCTTCGTCTTCAACGC‑TTTTTTGACTCTCAACGGTCTTTTTATCTGCTTTCTCTGGTTCGTTTGCTTCGCACAAACGACGTAACAGTG‑CATTTTGACGTTTTTGCTGATCCAGCAACGCCTCAAGCAGTTCAATCTGTTCGTTAGTCCGACTACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACGCTTACAACCAAAGACGCAATGTTCATCACGCCACTATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAAAAAATGATATCACCACGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTGTACATCCTGATCGCACATCATGTTGAATACCTGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAAT  >  CP042583/1588878‑1589435

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A