Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F210 I1 R1 4930 262.8 3829204 96.6% 3699011 272.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,594,025 3 bp→TGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,594,0250AT98.8% 563.8 / NA 243intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base A (1/1);  major base T (122/116);  minor base G (0/3);  total (123/120)
Fisher's exact test for biased strand distribution p-value = 1.19e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,594,0260CG99.6% 574.1 / NA 243intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/0);  major base G (123/119);  minor base T (0/1);  total (123/120)
Fisher's exact test for biased strand distribution p-value = 4.94e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,594,0270TA99.2% 572.8 / ‑6.5 243intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base A (121/118);  minor base G (0/2);  total (123/120)
Fisher's exact test for biased strand distribution p-value = 2.47e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 243 total aligned reads displayed.

TACGCGCATTATGTTCCTTCAGCAGCTCCGGTTCAAAGGCCGTTAAATCTCCACTTTTCACATAAGTCGCGGCATCAATGCTATCCCACGGCAGCGCGTTATCTTCGAATTTCTCACCCGTTTCCGTTTCTTCATTACCCGTCGGCATGATGATGTCTGGCGTTACGCCTTTACGTTGCGTACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAAACTACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCACTAGCGCTAGCACTGAAGCGGTCAACCAGCACCACCAGCGGGCCTTTATAGAAAACCTGTCCGTCGGTATCGCTATCTTCACGAACCTTGCCGTTGTTATCGCGGACCTGAACAATGGGACCCGCAGGAATAAACAGACCGGAGAGGCTTACGGCTTCAGTTAACGCCCCACCGCCATTGCTACGCA  >  CP042583/1593745‑1594305
                                                                                                                                                                                                                                                                                        |||                                                                                                                                                                                                                                                                                      
tACGCGCATTAGGTTCCTTCACCAGCTCCGGTTCAAAGGCCGTTAAATCTCCTGATTTCACATAAGTCGCGGCATCAATGCTATCCCACGGCAGCGCGTTATCTTCGAATTTCTCACCCGTTTCCGTTTCTTCATTACCCGTCGGCATGATGATGTCTGGCGTTACGCCTTTACGTTGCGTACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTa                                                                                                                                                                                                                                                                                  <  2:1627040/289‑1 (MQ=255)
  cgcgCATTATGTTCCTTCAGCAGCTCCGGTTCAAAGGCCGTTAAATCTCCTGATTTCACATAAGTCGCGGCATCAATGCTATCCCACGGCAGCGCGTTATCTTCGAATTTCTCACCCGTTTCCGTTTCTTCATTACCCGTCGGCATGATGATGTCTGGCGTTACGCCTTTACGTTGCGTACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTAtt                                                                                                                                                                                                                                                                                >  1:911474/1‑289 (MQ=255)
         tATGTTCCTTCAGCAGCTCCGGTTCAAAGGCCGTTAAATCTCCTGATTTCACATAAGTCGCGGCATCAATGCTATCCCACGGCAGCGCGTTATCTTCGAATTTCTCACCCGTTTCCGTTTCTTCATTACCCGTCGGCATGATGATGTCTGGCGTTACGCCTTTACGTTGCGTACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAAc                                                                                                                                                                                                                                                                         <  1:178412/289‑1 (MQ=255)
          aTGTTCCTTCAGCAGCTCCGGTTCAAAGGCCGTTAAATCTCCTGATTTCACATAAGTCGCGGCATCAATGCTATCCCACGGCAGCGCGTTATCTTCGAATTTCTCACCCGTTTCCGTTTCTTCATTACCCGTCGGCATGATGATGTCTGGCGTTACGCCTTTACGTTGCGTACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACg                                                                                                                                                                                                                                                                        <  1:1272121/289‑1 (MQ=255)
           tGTTCCTTCAGCAGCTCCGGTTCAAAGGCCGTTAAATCTCCTGATTTCACATAAGTCGCGGCATCAATGCTATCCCACGGCAGCGCGTTATCTTCGAATTTCTCACCCGTTTCCGTTTCTTCATTACCCGTCGGCATGATGATGTCTGGCGTTACGCCTTTACGTTGCGTACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACgg                                                                                                                                                                                                                                                                       <  2:20342/289‑1 (MQ=255)
               ccTTCAGCAGCTCCGGTTCAAAGGCCGTTAAATCTCCTGATTTCACATAAGTCGCGGCATCAATGCTATCCCACGGCAGCGCGTTATCTTCGAATTTCTCACCCGTTTCCGTTTCTTCATTACCCGTCGGCATGATGATGTCTGGCGTTACGCCTTTACGTTGCGTACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTg                                                                                                                                                                                                                                                                     >  1:1700179/1‑287 (MQ=255)
                 ttCAGCAGCTCCGGTTCAAAGGCCGTTAAATCTCCTGATTTCACATAAGTCGCGGCATCAATGCTATCCCACGGCAGCGCGTTATCTTCGAATTTCTCACCCGTTTCCGTTTCTTCATTACCCGTCGGCATGATGATGTCTGGCGTTACGCCTTTACGTTGCGTACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCtt                                                                                                                                                                                                                                                                 >  1:217886/1‑289 (MQ=255)
                 ttCAGCAGCTCCGGTTCAAAGGCCGTTAAATCTCCTGATTTCACATAAGTCGCGGCATCAATGCTATCCCACGGCAGCGCGTTATCTTCGAATTTCTCACCCGTTTCCGTTTCTTCATTACCCGTCGGCATGATGATGTCTGGCGTTACGCCTTTACGTTGCGTACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGATGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCtt                                                                                                                                                                                                                                                                 >  1:26865/1‑289 (MQ=255)
                 ttCAGCAGCTCCGGTTCAAAGGCCGTTAAATCTCCTGATTTCACATAAGTCGCGGCATCAATGCTATCCCACGGCAGCGCGTTATCTTCGAATTTCTCACCCGTTTCCGTTCCTTCATTACCCGTCGGCATGATGATGTCTGGCGTTACGCCTTTACGTTGCGTACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCCCAGAACCCACCGCTGGCCATTCCGGACGTCACATCCCATCGTAAACACGGTTCCATGCACGGCATTCCTGAACGGTCCCtt                                                                                                                                                                                                                                                                 >  2:1287196/1‑289 (MQ=255)
                   cagcagCTCCGGTTCAAAGGCCGTTAAATCTCCTGATTTCACATAAGTCGCGGCATCAATGCTATCCCACGGCAGCGCGTTATCTTCGAATTTCTCACCCGTTTCCGTTTCTTCATTACCCGTCGGCATGATGATGTCTGGCGTTACGCCTTTACGTTGCGTACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTCAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCttt                                                                                                                                                                                                                                                                >  2:1183431/1‑288 (MQ=255)
                   cagcagCTCCGGTTCAAAGGCCGTTAAATCTCCTGATTTCACATAAGTCGCGGCATCAATGCTATCCCACGGCAGCGCGTTATCTTCGAATTTCTCACCCGTTTCCGTTTCTTCATTACCCGTCGGCATGATGATGGCTGGCGTTACGCCTTTACGTTGCGTACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCGGGCCATGCGGGACGTAACATCTGATCGTAAATACGGTTCCATGAACGGTATTGCTGAACCGTGCCttt                                                                                                                                                                                                                                                                >  2:1480099/1‑288 (MQ=255)
                         cTCCGGTTCAAAGGCCGTTAAATCTCCTGATTTCACATAAGTCGCGGCATCAATGCTATCCCACGGCAGCGCGTTATCTTCGAATTTCTCACCCGTTTCCGTTTCTTCATTACCCGTCGGCATGATGATGTCTGGCGTTACGCCTTTACGTTGCGTACTGCCGCCGTTATCGCGATAGAATTTCTGGATCGTGTCCTGCACAGAACCCAGCGCTGGCCATTCAGGAAGTAACATCTGATCGTAAATACGGTTCAATGCACGGTATTGCTGAACGTTGACTTTAcacaac                                                                                                                                                                                                                                                         >  2:776387/1‑284 (MQ=255)
                         cTCCGGTTCAAAGGCCGTTAAATCTCCTGATTTCACATAAGTCGCGGCATCAATGCTATCCCACGGCAGCGCGTTATCTTCGAATTTCTCACCCGTTTCCGTTTCTTCATTACCCGTCGGCATGATGATGTCTGGCGTTACGCCTTTACGTTGCGTACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTa                                                                                                                                                                                                                                                                                  >  2:1839632/1‑264 (MQ=255)
                          tCCGGTTCAAAGGCCGTTAAATCTCCTGATTTCACATAAGTCGCGGCATCAATGCTATCCCACGGCAGCGCGTTATCTTCGAATTTCTCACCCGTTTCCGTTTCTTCATTACCCGTCGGCATGATGATGTCTGGCGTTACGCCTTTACGTTGCGTACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACg                                                                                                                                                                                                                                                        >  1:443819/1‑289 (MQ=255)
                              gTTCAAAGGCCGTTAAATCTCCTGATTTCACATAAGTCGCGGCATCAATGCTATCCCACGGCAGCGCGTTATCTTCGAATTTCTCACCCGTTTCCGTTTCTTCATTACCCGTCGGCATGATGATGTCTGGCGTTACGCCTTTACGTTGCGTACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAAc                                                                                                                                                                                                                                                                         <  2:378086/268‑1 (MQ=255)
                               ttCAAAGGCCGTTAAATCTCCTGATTTCACATAAGTCGCGGCATCAATGCTATCCCACGGCAGCGCGTTATCTTCGAATTTCTCACCCGTTTCCGTTTCTTCATTACCCGTCGGCATGATGATGTCTGGCGTTACGCCTTTACGTTGCGTACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGt                                                                                                                                                                                                                                                   <  1:1355605/289‑1 (MQ=255)
                                tCAAAGGCCGTTAAATCTCCTGATTTCACATAAGTCGCGGCATCAATGCTATCCCACGGCAGCGCGTTATCTTCGAATTTCTCACCCGTTTCCGTTTCTTCATTACCCGTCGGCATGATGATGTCTGGCGTTACGCCTTTACGTTGCGTACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGtt                                                                                                                                                                                                                                                  <  2:217831/289‑1 (MQ=255)
                                    aGGCCGTTAAATCTCCTGATTTCACATAAGTCGCGGCATCAATGCTATCCCACGGCAGCGCGTTATCTTCGAATTTCTCACCCGTTTCCGTTTCTTCATTACCCGTCGGCATGATGATGTCTGGCGTTACGCCTTTACGTTGCGTACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCAc                                                                                                                                                                                                                                               >  1:1766219/1‑288 (MQ=255)
                                      gCCGTTAAATCTCCTGCTGTCACATAAGTCGCGGCATCAATGCTATACCACGGCATCGCGTTATCTTCGAATTTCTCACCCGTTTCCGTTGCTTCATTACCCGTCGGCATGATGATGTCTGGCGTTACGCCTTTACGTTGCGTACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCAcc                                                                                                                                                                                                                                              <  2:1726673/287‑1 (MQ=255)
                                         gTTAAATCTCCTGATTTCACATAAGTCGCGGCATCAATGCTATCCCACGGCAGCGCGTTATCTTCGAATTTCTCACCCGTTTCCGTTTCTTCATTACCCGTCGGCATGATGATGTCTGGCGTTACGCCTTTACGTTGCGTACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAACCGTCGGTTCACCcaca                                                                                                                                                                                                                                          >  1:1003970/1‑288 (MQ=255)
                                         gTTAAATCTCCTGATTTCACATAAGTCGCGGCATCAATGCTATCCCACGGCAGCGCGTTATCTTCGAATTTCTCACCCGTTTCCGTTTCTTCATTACCCGTCGGCATGATGATGTCTGGCGTTACGCCTTTACGTTGCGTACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCcaca                                                                                                                                                                                                                                          >  2:1397029/1‑288 (MQ=255)
                                                 tcctgatttCACATAAGTCGCGGCATCAATGCTATCCCACGGCAGCGCGTTATCTTCGAATTTCTCACCCGTTTCCGTTTCTTCATTACCCGTCGGCATGATGATGTCTGGCGTTACGCCTTTACGTTGCGTACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCa                                                                                                                                                                                                                                 <  1:162523/283‑1 (MQ=255)
                                                  cctgatttCACATAAGTCGCGGCATCAATGCTATCCCACGGCAGCGCGTTATCTTCGAATTTCTCACCCGTTTCCGTTTCTTCATTACCCGTCGGCATGATGTTGTCTGGCGTTACGCCTTTACGTTGCGTACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCAc                                                                                                                                                                                                                                <  2:977161/284‑1 (MQ=255)
                                                  cctgatttCACAGCAGTCGCGACATGAATGCTATCCCACGGCAGCGCGTTATCTTCGAATTTCTCACCCGTTTCCGTTTCTTCATTACCCGTCGGCATGATGATGTCTGGCGTTACGCCTTTACGTTGCGTACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCAc                                                                                                                                                                                                                                <  2:1135912/284‑1 (MQ=255)
                                                                aGTCGCGGCATCAATGCTATCCCACGGCAGCGCGTTATCTTCGAATTTCTCACCCGTTTCCGTTTCTTCATTACCCGTCGGCATGATGATGTCTGGCGTTACGCCTTTACGTTGCGTACTGCCGCCGTTAACGCGATAGAATTTCTGGATCTTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTCACCAAACGTCGGTTCACCCACAACCAGCGACCGACCGTAATCCTg                                                                                                                                                                                                                   >  2:1594269/1‑288 (MQ=255)
                                                                     cgGCATCAATGCTATCCCACGGCAGCGCGTTATCTTCGAATTTCTCACCCGTTTCCGTTTCTTCATTACCCGTCGGCATGATGATGTCTGGCGTTACGCCTTTACGTTGCGTACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTCCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAAAGGTATTGCTGAACGGTGCCTTTCCCAAACGTCGGTCCACCCACAACCATCGCACGACCGTAATCCTGCAtta                                                                                                                                                                                                              >  2:1780399/1‑287 (MQ=255)
                                                                       gCATCAATGCTATCCCACGGCAGCGCGTTATCTTCGAATTTCTCACCCGTTTCCGTTTCTTCATTACCCGTCGGCATGATGATGTCTGGCGTTACGCCTTTACGTTGCGTACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCAc                                                                                                                                                                                                                                <  1:1458174/268‑1 (MQ=255)
                                                                            aaTGCTATCCCACGGCAGCGCGTTATCTTCGAATTTCTCACCCGTTTCCGTTTCTTCATTACCCGTCGGCATGATGATGTCTGGCGTTACGCCTTTACGTTGCGTACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCa                                                                                                                                                                                                      <  2:1185871/289‑1 (MQ=255)
                                                                                cTATCCCACGGCAGCGCGTTATCTTCGAATTTCTCACCCGTTTCCGTTTCTTCATTACCCGTCGGCATGATGATGTCTGGCGTTACGCCTTTACGTTGCGTACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCCCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACTTCGGTTCACCCACAACCAGCCCACGCCCGTACTCCTCCATTGCCGCGCCaaata                                                                                                                                                                                                  >  2:1283819/1‑287 (MQ=255)
                                                                                   tCCCACGGCAGCGCGTTATCTTCGAATTTCTCACCCGTTTCCGTTTCTTCATTACCCGTCGGCATGATGATGTCTGGCGTTACGCCTTTACGTTGCGTACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGtt                                                                                                                                                                                                                                                  >  1:830132/1‑238 (MQ=255)
                                                                                   tCCCACGGCAGCGCGTTATCTTCGAATTTCTCACCCGTTTCCGTTTCTTCATTACCCGTCGGCATGATGATGTCTGGCGTTACGCCTTTACGTTGCGTACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGAttt                                                                                                                                                                                               >  2:1492144/1‑289 (MQ=255)
                                                                                   tCCCACGGCAGCGCGTTATCTTCGAATTTCTCACCCGTTTCCGTTTCTTCATTACCCGTCGGCATGATGATGTCTGGCGTTACGCCTTTACGTTGCGTACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGAtt                                                                                                                                                                                                >  1:1077772/1‑288 (MQ=255)
                                                                                   tCCCACGGCAGCGCGTTATCTTCGAATTTCTCACCCGTTTCCGTTTCTTCATTACCCGTCGGCATGATGATGTCTGGCGTTACGCCTTTACGTTGCGTACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGAtt                                                                                                                                                                                                >  2:858720/1‑288 (MQ=255)
                                                                                   tCCCACGGCAGCGCGTTATCTTCGAATTTCTCACCCGTTTCCGTTTCTTCATTACCCGTCGGCATGATGATGTCTGGCGTTACGCCTTTACGTTGCGTACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGAtt                                                                                                                                                                                                >  1:351420/1‑288 (MQ=255)
                                                                                    cccACGGCAGCGCGTTATCTTCGAATTTCTCACCCGTTTCCGTTTCTTCATTACCCGTCGGCATGATGATGTCTGGCGTTACGCCTTTACGTTGCGTACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGAtt                                                                                                                                                                                                >  2:1224291/1‑287 (MQ=255)
                                                                                     ccACGGCAGCGCGTTATCTTCGAATTTCTCACCCGTTTCCGTTTCTTCATTACCCGTCGGCATGATGATGTCTGGCGTTACGCCTTTACGTTGCGTACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTct                                                                                                                                                                                             <  1:1371316/289‑2 (MQ=255)
                                                                                        cGGCAGCGCGTTATCTTCGAATTTCTCACCCGTTTCCGTTTCTTCATTACCCGTCGGCATGATGATGTCTGGCGTTACGCCTTTACGTTGCGTACTGCCGCCGTTAACGCGATCGAATCTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTCCTGAACGGTCCCTTTACAAAACGTCGGTTCCCCCACAACCACCGCACGACCGTACTCCAGCATTGCCGCGTCaagtatcttcgc                                                                                                                                                                                           >  2:580315/1‑278 (MQ=255)
                                                                                            aGCGCGTTATCTTCGAATTTCTCACCCGTTTCCGTTTCTTCATTACCCGTCGGCATGATGATGTCTGGCGTTACGCCTTTACGTTGCGTACTGCCGTCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCTTTGCCGCGGCAAAGATTTctgaagccg                                                                                                                                                                                      <  1:776387/289‑9 (MQ=255)
                                                                                               gcgTTATCTTCGAATTTCTCACCCGTTTCCGTTTCTTCATTACCCGTCGGCATGATGATGTCTGGCGTTACGCCTTTACGTTGCGTACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTctgaagccg                                                                                                                                                                                      <  1:584639/286‑9 (MQ=255)
                                                                                                       ttCGAATTTCTCACCCGTTTCCGTTTCTTCATTACCCGTCGGCATGATGATGTCTGGCGTTACGCCTTTACGTTGCGTACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCACTGAAg                                                                                                                                                                           <  1:547729/289‑1 (MQ=255)
                                                                                                       ttCGAATTTCTCACCCGTTTCCGTTTCTTCATTACCCGTCGGCATGATGATGTCTGGCGTTACGCCTTTACGTTGCGTACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCACTGAAg                                                                                                                                                                           <  1:924754/289‑1 (MQ=255)
                                                                                                         cGAATTTCTCACCCGTTTCCGTTTCTTCATTACCCGTCGGCATGATGATGTCTGGCGTTACGCCTTTACGTTGCGTACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGAc                                                                                                                                                                                                                             >  2:1913933/1‑237 (MQ=255)
                                                                                                              ttCTCACCCCTTTCCGTTTTTTCATTGCCCGGTGGCAGGCTGATGTCTGGCGTTAGGCCTTTACGTTGCGTACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCACTGAAGCGGTCaa                                                                                                                                                                    <  2:1011479/289‑1 (MQ=255)
                                                                                                                        tttccgtttcTTCATTACCCGTCGGCATGATGATGTCTGGCGTTACGCCTTTACGTTTCGTACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGCCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTTCCTTTACCAAACGTCCGTTCACCCACAACCAGCGCACCACCGTAACCACGCATTGCCGTGGCAACTATTTCTGACGCCGCAGCACTGAAGCGGTCAACCAgacaca                                                                                                                                                           >  2:1112171/1‑283 (MQ=255)
                                                                                                                          tccgtttcTTCATTACCCGTCGGCATGATGATGTCTGGCGTTACGCCTTTACGTTGCGTACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCACTGAAGCGGTCAACCAGCaccaccc                                                                                                                                                        >  1:1285079/1‑288 (MQ=255)
                                                                                                                               ttcttcATTACCCGTCGGCATGATGATGTCTGGCGTTACGCCTTTACGTTGCGTACTGCCGCCGTTAACGCGATAGAGTTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCACTGAAGCGGTCAACCAGCACCACCAGCg                                                                                                                                                     <  2:1765082/287‑1 (MQ=255)
                                                                                                                               ttcttcATTACCCGTCGGCATGATGATGTCTGGCGTTACGCCTTTACGTTGCGTACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCACTGAAGCGGTCAACCAGCACCACCAGCgg                                                                                                                                                    >  1:1243892/1‑288 (MQ=255)
                                                                                                                                       tACCCTTCGGCATGATGATGTCTGGCGTTACGCCTTTACGTTGCGTACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCACTGAAGCGGTCAACCAGCACCCCCAGCGGGCCTTtata                                                                                                                                           <  1:1112171/289‑1 (MQ=255)
                                                                                                                                            gTCGGCATGATGATGTCTGGCGTTACGCCTTTACGTTGCGTACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCACTGAAGCGGTCAACCAGCACCACCAGCGGGCCTTTATAGaaa                                                                                                                                       >  1:120501/1‑288 (MQ=255)
                                                                                                                                            gTCGGCATGATGATGTCTGGCGTTACGCCTTTACGTTGCGTACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCACTGAAGCGGTCAACCAGCACCACCAGCGGGCCTTTATAGaaa                                                                                                                                       >  1:194127/1‑288 (MQ=255)
                                                                                                                                            gTCGGCATGATGATGTCTGGCGTTACGCCTTTACGTTGCGTACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCACTGAAGCGGGCAACCCGCACCACCAGCGGGCCCTCATCGaaa                                                                                                                                       >  2:326991/1‑288 (MQ=255)
                                                                                                                                             tCGGCATGATGATGTCTGGCGTTACGCCTTTACGTTGCGTACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCACTGAAGCGGTCAACCAGCACCACCAGCGGGCCTTTATAGaaaa                                                                                                                                      >  1:1871518/1‑288 (MQ=255)
                                                                                                                                              cGGCATGATGATGTCTGGCGTTACGCCTTTACGTTGCGTACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCACTGAAGCGGTCAACCAGCACCACCAGCGGGCCTTTATAGAAAAc                                                                                                                                     >  2:894714/1‑288 (MQ=255)
                                                                                                                                                           tCTGGCGTTACGCCTTTACGTTGCGTACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCACTGAAGCGGTCAACCAGCACCACCCGCGGGCCTTTTCAAAAAACCTGACCGTCggca                                                                                                                        >  2:1619984/1‑286 (MQ=255)
                                                                                                                                                           tCTGGCGTTACGCCTTTACGTTGCGTACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCACTGAAGCGGTCAACCAGCACCACCAGCGGGCCTTTATAGAAAACCTGTCCGTCGGTa                                                                                                                        >  1:718177/1‑288 (MQ=255)
                                                                                                                                                           tCTGGCGTTACGCCTTTACGTTGCGTACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCACTGAAGCGGTCAACCAGCACCACCAGCGGGCCTTTATAGAAAACCTGTCCGTCGGTa                                                                                                                        >  1:1480884/1‑288 (MQ=255)
                                                                                                                                                             tGGCGTTACGCCTTTACGTTGCGTACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGCTTTCCGAAGCCGAAGCACTGAAGCGGTCAACCAGCACCACCAGCGGCCCTTTATAGAAAACCTGTCCGGCGGTacc                                                                                                                      >  2:911733/1‑286 (MQ=255)
                                                                                                                                                             tGGCGTTACGCCTTTACGTTGCGTACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAAGGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCACTGAAGCGGTCAACCAGCACCACCAGCGGGCCTTTATAGAAAACCTGTCCGTCGGTATCg                                                                                                                     <  2:1105821/289‑1 (MQ=255)
                                                                                                                                                                      gCCTTTACGTTGCGTCCTGCCGCCGTTAACTCGAACGAAATTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCACTGAAGCGGTCAACCAGCACCACCAGCGGGCCTTTATAGAAAACCTGTCCGTCGGTATCGCTATCTTCa                                                                                                            <  2:1077772/289‑1 (MQ=255)
                                                                                                                                                                            aCGTTGCGTACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCACTGAAGCGGTCAACCAGCACCACCAGCGGGCCTTTATAGAAAACCTGTCCGTCGGTATCGCTATCTTCACGAAcc                                                                                                      <  1:38412/289‑1 (MQ=255)
                                                                                                                                                                                tGCGTACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCACTGAAGCGGTCAACCAGCACCACCAGCGGGCCTTTATAGAAAACCTGTCCGTCGGTATCGCTATCTTCACGAACCTTGc                                                                                                  <  1:779856/289‑1 (MQ=255)
                                                                                                                                                                                   gTACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCACTGAAGCGGTAAACCAGCACCACCAGCGGGCCTTTATAGAAAACCTGTCCGTCGGTATCGCTATCTTCACGAACCTTGCCg                                                                                                <  1:1442329/288‑1 (MQ=255)
                                                                                                                                                                                    tACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCACTGAAGCGGTCAACCAGCACCACCCGCGGGCCTTTATAGAAAACCTGTCCGTCCGTATCCCCATCTTCCTGAACCTTGCCggt                                                                                              >  2:1696182/1‑287 (MQ=255)
                                                                                                                                                                                    tACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCACTGAAGCGGTCAACCAGCACCACCAGCGGGCCTTTATAGAAAACCTGTCCGTCGGTATCGCTATCTTCACGAACCTTGc                                                                                                  <  1:1182071/285‑1 (MQ=255)
                                                                                                                                                                                    tACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCACTGAAGCGGTCAACCAGCACCACCAGCGGGCCTTTATAGAAAACCTGTCCGTCGGTATCGCTATCTTCACGAACCTTGCCgtt                                                                                              >  1:1268711/1‑289 (MQ=255)
                                                                                                                                                                                         ccgccgTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCTATTCAGAACGTAACATCTGCACGTAAATACGGCTCAATGAACGGTATTGCTGAACGGCGCCTATACCAAACGTCGGTACACCCACAACCAGCGCACGAACGTAAACCTGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCCCTGAAGCGGTCAACCAGCACCACCAGCCGGCCTTGATAGAAAACCAGTACGTCGGTATCGCTATCTTCACGAACCTTCCCGTTGatat                                                                                         >  2:613093/1‑289 (MQ=255)
                                                                                                                                                                                           gccgTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCACTGAAGCGGTCAACCAGCACCACCAGCGGGCCTTTATAGAAAACCTGTCCGTCGGTATCGCTATCTTCACGAACCTTGCCGTTGTTATcg                                                                                       <  2:672781/289‑1 (MQ=255)
                                                                                                                                                                                           gccgTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCACTGAAGCGGTCAACCAGCACCACCAGCGGGCCTTTATAGAAAACCTGTCCGTCGGTATCGCTATCTTCACGAACCTTGCCGTTGTTATcg                                                                                       <  2:443819/289‑1 (MQ=255)
                                                                                                                                                                                           gccgTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCACTGAAGCGGTCAACCAGCACCACCAGCGGGCCTTTATAGAAAACCTGTCCGTCGGTATCGCTATCTTCACGAACCTTGCCGTTGTTATcg                                                                                       <  1:1611624/289‑1 (MQ=255)
                                                                                                                                                                                           gccgTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCACTGAAGCGGTCAACCAGCACCACCAGCGGGCCTTTATAGAAAACCTGTCCGTCGGTATCGCTATCTTCACGAACCTTGCCGTTGTTATcg                                                                                       <  1:858720/289‑1 (MQ=255)
                                                                                                                                                                                           gccgTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCACTGAAGCGGTCAACCAGCACCACCAGCGGGCCTTTATAGAAAACCTGTCCGTCGGTATCGCTATCTTCACGAACCTTGCCGTTGTTATcg                                                                                       <  1:1833888/289‑1 (MQ=255)
                                                                                                                                                                                           gcccTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGNTNACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCACTGAAGCGGTCAACCAGCACCACCAGCGGGCCTTTATAGAAAACCTGTCCGTCGGTATCGCTATCTTCACGAACCTTGCCGTTGTTATcg                                                                                       <  1:96599/289‑1 (MQ=255)
                                                                                                                                                                                            ccgTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCCCGGCAAAGATTTCTTAAGCCGAAGCACTGAAGCGGTCAACCAGCACCACCAGCGGGACTTTTTAGAAAAACAGGTCGGCGGTATTGCTATCATACCGAACCTTGCCGTTGTTATcgc                                                                                      >  2:46331/1‑289 (MQ=255)
                                                                                                                                                                                             cgTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCACTGAAGCGGTCAACCAGCACCACCAGCGGGCCTTTATAGAAAACCTGTCCGTCGGTATCGCTATCTTCACGAACCTTGCCGTTGTTATcgcg                                                                                     <  1:894714/289‑1 (MQ=255)
                                                                                                                                                                                             cgTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCACTGAAGCGGTCAACCAGCACCACCAGCGGGCCTTTATAGAAAACCTGTCCGTCGGTATCGCTATCTTCACGAACCTTGCCGTTGTTATcgcg                                                                                     <  1:1553495/289‑1 (MQ=255)
                                                                                                                                                                                             cgTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCACTGAAGCGGTCAACCAGCACCACCAGCGGGCCTTTATAGAAAACCTGTCCGTCGGTATCGCTATCTTCACGAACCTTGCCGTTGTTATcgcg                                                                                     <  1:413637/289‑1 (MQ=255)
                                                                                                                                                                                                tAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCACTGAAGCGGTCAACCAGCACCACCAGCGGGCCTTTATAGAAAACCTGTCCGTCGGTATCGCTATCTTCACGAACCTTGCCGTTGTTATCGCGGAc                                                                                  <  1:1500662/289‑1 (MQ=255)
                                                                                                                                                                                                   cgcgATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCACTGAAGCGGTCAACCAGCACCACCAGCGGGCCTTTATAGAAAACCTGTCCGTCGGTATCGCTATCTTCACGAACCTTGCCGTTGTTATCGCGGACCTg                                                                               >  1:647742/1‑289 (MQ=255)
                                                                                                                                                                                                   cgcgATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCACTGAAGCGGTCAACCAGCACCACCAGCGGGCCTTTATAGAAAACCTGTCCGTCGGTATCGCTATCTTCACGAACCTTGCCGTTGTTATCGCGGACCTg                                                                               >  1:1141032/1‑289 (MQ=255)
                                                                                                                                                                                                       aTAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCACTGAAGCGGTCAACCAGCACCACCAGCGGGCCTTTATAGAAAACCTGTCCGTCGGTATCGCTAt                                                                                                                 >  1:1291636/1‑251 (MQ=255)
                                                                                                                                                                                                        tAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCACTGAAGCGGTCAACCAGCACCACCAGCGGGCCTTTATAGAAAACCTGTCCGTCGGTATCGCTATCTTCACGAACCTTGCCGTTGTTATCGCGGACCTGAACaa                                                                          <  2:524037/289‑1 (MQ=255)
                                                                                                                                                                                                                  ggATAGGGTACTGCACAGAACCAAGGCATGACCATTCAGGACCGAACATCCGATCGTCAATACGGTTCAATGAACGGTATTGCTGAACGGTGTCTTTACCAAACGTCGGTGCACCCGCAGCCAGCGAACGACCTGAATCCGGCAGTGCCGCGGAAAAGATTTCTGAAGCCGAAGCACTGAAGCGGTCAACCAGCACCACCAGCGGGCCTTTATAGAAAACCTGGCCGTCGGTATCGCTATCTTCACGAACCTCGCCGTTGTTATCGCGGACCTGAACAATGGGACCCg                                                                 <  2:261218/288‑1 (MQ=255)
                                                                                                                                                                                                                               cacaGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCACTGAAGCGGTCAACCAGCACCACCAGCGGGCCTTTATAGAAAACCTGTCCGTCGGTATCGCTATCTTCACGAACCTTGCCGTTGTTATCGCGGACCTGAACAATGGGACCCGCAGGAATAAACAg                                                    >  1:1714758/1‑288 (MQ=255)
                                                                                                                                                                                                                               cacaGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCACTGAAGCGGTCAACCAGCACCACCAGCGGGCCTTTATAGAAAACCTGTCCGTCGGTATCGCTATCTTCACGAACCTTGCCGTTGTTATCGCGGACCTGAACAATGGGACCCGCAGGAATAAACAg                                                    >  1:475810/1‑288 (MQ=255)
                                                                                                                                                                                                                                    aaCCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCACTGAAGCGGTCAACCAGCACCACCAGCGGGCCTTTATAGAAAACCTGTCCGTCGGTATCGCGATCTTCACGAACCTTGCCGTTGTTATCGCGGACCTGAACCATGGGACCCGCCGGACTAAACAGACCgg                                               >  2:1243473/1‑288 (MQ=255)
                                                                                                                                                                                                                                         aGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCACTGAAGCGGTCAACCAGCACCACCAGCGGGCCTTTATAGAAAACCTGTCCGTCGGTATCGCTATCTTCACGAACCTTGCCGTTGTTATCGCGGACCTGAACAATGGGACCCGCAGGAATAAACAGACCGgagcgcg                                         >  1:284155/1‑285 (MQ=255)
                                                                                                                                                                                                                                           cgcTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCACTGAAGCGGTCAACCAGCACCACCAGCGGGCCTTTATAGAAAACCTGTCCGTCGGTATCGCTATCTTCACGAACCTTGCCGTTGTTATCGCGGACCTGAACAATGGGACCCGCAGGAATAAACAGACCGGagagcgat                                       >  1:1199421/1‑285 (MQ=255)
                                                                                                                                                                                                                                           cgcTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCACTGAAGCGGTCAACCAGCACCACCAGCGGGCCCTTATAGAAAACCTGTCCGTCGGTATCGCTATCTTCACCAACCTTGCCGTTGTTATCGCGGGCCTGAACAAAGGGACCCGGCAGAATCACCAGACCCGAGAGGcac                                       >  2:48045/1‑287 (MQ=255)
                                                                                                                                                                                                                                                gCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCACTGTAGCGGTCAACCAGCACCCCCAGCGGGCCTTTATAGAAAACCTGTCCGTCGGTATCGCTACCTTCACGACCCTTGCCGTTGTTATCGCGGACCTGAACAATGGGACCCGCAGGACTAAACAGACAGGagagcgaaccgg                                   >  2:761673/1‑280 (MQ=255)
                                                                                                                                                                                                                                                              aaCATCTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCACTGAAGCGGTCAACCAGCACCACCGGCGGGCCTTTATAGAAAACCTGTCCGTCGGTATCGCTATCTTCACGAACCTTGCCGTTGTTATCGCGGACCTGAACAATGGGACCCGCAGGAATAAACAGACCGGAGAGCGATACGGCTTCAGTTaa                         >  2:1085241/1‑284 (MQ=255)
                                                                                                                                                                                                                                                                   cTGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCACTGAAGCGGTCAACCAGCACCACCAGCGGGCCTTTATAGAAAACCTGTCCGTCGGTATCGCTATCTTCACGAACCTTGCCGTTGTTATCGCGGACCTGAACAATGGGACCCGCAGGAATAAACAGACCGGAGAGCGATACGGCTTCAGTTAACGCCCCAcc                >  2:1566607/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                    tggtCGTAAATACGGTTCAAAGAACGTGATTGCTGAACGCTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCACTGAAGCGGTCAACCAGCACCACCAGCGGGCCTTTATAGAAAACCTGTCCGTCGGTATCGTTATCTTCACGAACCTTGCCGTTGTTATCGCGGACCTGAACAATGGGACCCGCAGGAATAAACAGACCGGAGAGCGATACGGCTTCAGTTAACGCCCCACCGc              <  2:1437804/286‑1 (MQ=255)
                                                                                                                                                                                                                                                                    tGATCGTACATCCGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACGCGCGCACGACCGTAATCCTGCAGTGCCGCGGCAAAGATTTCTGAAGCCGAAGCACTGAAGCGGTCAACCAGCACCACCAGCGGGCCTTTATAGAAAACCTGTCCGTCGGTATCGCTATCTTCACGAACCTTGCCTTTGTTATCGCGGACCTGAACAATGGGACCCGCAGGAATAAACAGACCGGAGAGCGATACGGCTTCAGTTAACGCCCCACCGc              <  1:1759591/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                    tGATCGTACAGACGGTTAAATGGACGGTATTGCTGAAAGGTGCCTTTACCAACCGGCGGTTCACCACAAACCAGCGCACGACCGTAATCCGGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCACTGAAGCGGTCAACCAGCACCACCAGCGGGCCTTTATAGAAAACCTGTCCGTCGGTATCGCTATCTTCACGAACCTTGCCGTTGTTATCGCGGACCTGAACAATGGGACCCGCAGGAATAAACAGACCGGAGAGCGATACGGCTTCAGTTAACGCCCCACCGc              <  2:1310557/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                    tGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCACTGAAGCGGTCAACCAGCACCACCAGCGGGCCTTTATAGAAAACCTGTCCGTCGGTATCGCTATCTTCACGAACCTTGCCGTTGTTATCGCGGACCTGAACAATGGGACCCGCAGGAATAAACAGACCGGAGAGCGATACGGCTTCAGTTAACGCCCCACCGc              <  2:718177/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                    tGATCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCACTGAAGCGGTCAACCAGCACCACCAGCGGGCCTTTATAGAAAACCTGTCCGTCGGTATCGCTATCTTCACGAACCTTGCCGTTGTTATCGCGGACCTGAACAATGGGACCCGCAGGAATAAACAGACCGGAGAGCGATACGGCTTCAGTTAACGCCCCACCGc              <  1:1594269/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                      aTCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCACTGAAGCGGTCAACCAGCACCACCAGCGGGCCTTTATAGAAAACCTGTCCGTCGGTATCGCTATCTTCACGAACCTTGCCGTTGTTATCGCGGACCTGAACAATGGGACCCGCAGGAATAAACAGACCGGAGAGCGATACGGCTTCAGTTAACGCCCCACCGCCa            >  2:422902/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                           aaaTACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCACTGAAGCGGTCAACCAGCACCACCAGCGGGCCTTTATAGAAAACCTGTCCGTCGGTATCGCTATCTTCCCGAACCTTGCCGTTGTTATCGCGGACCTGAACAATGGGACCCGCAGGAATAAACAGACCGGAGAGCGATACGGCTTCAGTTAACGCCCCACGGCCATTGCt       >  1:200316/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                              tACGGTTCAATGAACGGCATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCACTGAAGCGGTCAACCAGCACCACCAGCGGGCCTTTATAGAAAACCTGTCCGTCGGTATCGCTATCTTCACGAACCTTGCCGTTGTTATCGCGGACCTGAACAATGGGACCCGCAGGAATAAACAGACCGGAGAGCGATACGGCTTCAGTTAACGCCCCACCGCCATTGCTACg    <  1:483688/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                                cGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCACTGAAGCGGTCAACCAGCACCACCAGCGGGCCTTTATAGAAAACCTGTCCGTCGGTATCGCTATCTTCACGAACCTTGCCGTTGTTATCGCGGACCTGAACAATGGGACCCGCAGGAATAAACAGACCGGAGAGCGATACGGCTTCAGTTAACGCCCCACCGCCATTGCTACGCa  >  1:748961/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                                        |||                                                                                                                                                                                                                                                                                      
TACGCGCATTATGTTCCTTCAGCAGCTCCGGTTCAAAGGCCGTTAAATCTCCACTTTTCACATAAGTCGCGGCATCAATGCTATCCCACGGCAGCGCGTTATCTTCGAATTTCTCACCCGTTTCCGTTTCTTCATTACCCGTCGGCATGATGATGTCTGGCGTTACGCCTTTACGTTGCGTACTGCCGCCGTTAACGCGATAGAATTTCTGGATCGTGTACTGCACAGAACCCAGCGCTGGCCATTCAGGACGTAACATCTGATCGTAAATACGGTTCAAACTACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCACTAGCGCTAGCACTGAAGCGGTCAACCAGCACCACCAGCGGGCCTTTATAGAAAACCTGTCCGTCGGTATCGCTATCTTCACGAACCTTGCCGTTGTTATCGCGGACCTGAACAATGGGACCCGCAGGAATAAACAGACCGGAGAGGCTTACGGCTTCAGTTAACGCCCCACCGCCATTGCTACGCA  >  CP042583/1593745‑1594305

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A