Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F210 I1 R1 4929 268.4 3907572 96.3% 3762991 273.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,540,836 3 bp→TGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,540,8360AT99.7% 717.6 / NA 299intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base A (0/0);  major base T (171/126);  minor base C (1/0);  total (173/126)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,540,8370CG99.7% 712.0 / NA 299intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/0);  major base G (173/125);  minor base T (0/1);  total (173/126)
Fisher's exact test for biased strand distribution p-value = 4.21e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,540,8380TA100.0% 717.6 / NA 299intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base A (173/126);  total (173/126)

Only 100 of 299 total aligned reads displayed.

CCGGGCAGATGTTATATTTGCCTTCCAGACAGTAACGACAGTGACCGCAAGGAACGCCAGGTTCGATATTTACCCGATCCCCCGGTTTAAATTTGCGCACGCGGCTTCCCACAGCCACAACCGTCCCGGCGCATTCATGACCCAGGCCAATTTCTTGATTTGGGTCTTTAGGCGGAATAAACGGGCCACTTTCAAAACCATGTACATCACTACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCACTAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTACTATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATACTAACCGCCCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTGAGCAGCACTGCAACGGCATAAGGTGCGGCAATACCACTGATTCGCCCTACCGCATTCGCCAGACCGGAG  >  CP042583/1540559‑1541116
                                                                                                                                                                                                                                                                                     |||                                                                                                                                                                                                                                                                                      
             atttttGCCTTCCAGACAGTAACGACAGTGGCCGCAAGGGACGCCAGGTTCGATAGTTACCCGATCCCCCGGTTTAAATTTGCGCACGCGGCTTCCCACAGCCACAACCGTCCCGGCGCATTCATGACCCAGGCCAATTTCTTGATTTGGGTCTTTAGGCGGAATAAACGGGCCTGATTCAAAACCATGTACATCTGAACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGc                                                                                                                                                                                                                                                                  <  2:837147/286‑1 (MQ=255)
             atatTTTCCTTCCAGCCAGTACCGCCAGTGACCGCAAGTGACGCCAGGTTCGATATTTACCCGATCCCCCGGTTTACATTTGCGCACGCGGCTTCCCACAGCCACACCCGTCCCGGCGCATTCATGACCCAGGCCAATTTCTTGATTTGGGTCTTTAGGCGGAATAAACGGGCCTGATTCAAAACCATGTACATCTGAACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGc                                                                                                                                                                                                                                                                  <  2:315348/289‑1 (MQ=255)
                   gCCTTCCAGACAGTAACGACAGTGACCGCAAGGAACGCCAGGTTCGATATTTACCCGATCCCCCGGTTTAAATTTGCGCACGCGGCTTCCCACAGCCACAACCGTCCCGGCGCATTCATGACCCAGGCCAATTTCTTGATTTGGGTCTTTAGGCGGAATAAACGGGCCTGATTCAAAACCATGTACATCTGAACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGc                                                                                                                                                                                                                                                            >  2:33092/1‑289 (MQ=255)
                   gCCTTCCAGACAGTAACGACAGTGACCGCAAGGAACGCCAGGTTCGATATTTACCCGATCCCCCGGTTTAAATTTGCGCACGCGGCTTCCCACAGCCACAACCGTCCCGGCGCATTCATGACCCAGGCCAATTTCTTGATTTGGGTCTTTAGGCGGAATAAACGGGCCTGATTCAAAACCATGTACATCTGAACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGc                                                                                                                                                                                                                                                            >  1:1276424/1‑289 (MQ=255)
                        ccAGACAGTAACGACAGTGACCGCAAGGAACGCCAGGTTCGATATTTACCCGATCCCCCGGTTTAAATTTGCGCACGCGGCTTCCCACAGCCACAACCGTCCCGGCGCATTCATGACCCAGGCCAATTTCTTGATTTGGGTCTTTAGGCGGAATAAACGGGCCTGATTCAAAACCATGTACATCTGAACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAatat                                                                                                                                                                                                                                                       <  1:33092/289‑1 (MQ=255)
                                tAACGACAGTGACCGCAAGGAACGCCAGGTTCGATATTTACCCGATCCCCCGGTTTAAATTTGCGCACGCGGCTTCCCACAGCCACAACCGCCCCGGCGCATTCATGACCCAGGCCAATTTCTTGATTTGGGTCTTTAGGCGGAATAAACGGGCCTGATTCAAAACCATGTACATCTGAACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTTCCCGGCACCTGCAATATTGCttttg                                                                                                                                                                                                                                               >  2:297336/1‑287 (MQ=255)
                                                   gcaCGCCAGGTTCGAGATTGACCCGATCCCCCGGTTTAAATTTGCGCACGCGGCTTCCCACAGCCACAACCGTCCCGGCGCATTCATGACCCAGGCCAATTTCTTGATTTGGGTCTTTAGGCGGAATAAACGGGCCTGATTCAAAACCATGTACATCTGAACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATc                                                                                                                                                                                                                             <  2:1939369/286‑1 (MQ=255)
                                                    aaCGCCAGGTTCGATATTTACCCGATCCCCCGGTTTAAATTTGCGCACGCGGCTTCCCACAGCCACAACCGTCCCGGCGCATTCATGACCCAGGCCAATTTCTTGATTTGGGTCTTTAGGCGGAATAAACGGGCCTGATTCAAAACCATGTACATCTGAACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATcc                                                                                                                                                                                                                            <  2:940659/288‑1 (MQ=255)
                                                     aCGCCAGGTTCGATATTTACCCGATCCCCCGGTTTAAATTTGCGCACGCGGCTTCCCACAGCCACAACCGTCCCGGCGCATTCATGACCCAGGCCAATTTCTTGATTTGGGTCTTTAGGCGGAATAAACGGGCCTGATTCAAAACCATGTACATCTGAACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCAc                                                                                                                                                                                                                          <  1:1860550/289‑1 (MQ=255)
                                                                 atatTTACCCGATCCCCCGGTTTAAATTTGCGCACGCGGCTTCCCACAGCCACAACCGTCCCGGCGCATTCATGACCCAGGCCAATTTCTTGATTTGGGTCTTTAGGCGGAATAAACGGGCCTGATTCAAAACCATGTACATCTGAACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTAttattta                                                                                                                                                                                                              >  1:983456/1‑289 (MQ=255)
                                                                   atTTACCCGATCCCCCGGTTTAAATTTGCGCACGCGGCTTCCCACAGCCACAACCGTCCCGGCGCATTCATGACCCAGGCCAATTTCTTGATTTGGGTCTTTAGGCGGAATAAACGGGCCTGATTCAAAACCATGTACATCTGAACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATtatttatt                                                                                                                                                                                                            <  1:515913/289‑1 (MQ=255)
                                                                      tACCCGATCCCCCGGTTTAAATTTGCGCACGCGGCTTCCCACAGCCACAACCGTCCCGGCGCATTCATGACCCAGGCCAATTTCTTGATTTGGGTCTTTAGGCGGAATAAACGGGCCTGATTCAAAACCATGTACATCTGAACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGc                                                                                                                                                                                                         <  1:962176/289‑1 (MQ=255)
                                                                       aCCCGATCCCCCGGTTTAAATTTGCGCACGCGGCTTCCCACAGCCACAACCGTCCCGGCGCATTCATGACCCAGGCCAATTTCTTGATTTGGGTCTTTAGGCGGAATAAACGGGCCTGATTCAAAACCATGTACATCTGAACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCAtt                                                                                                                                                                                                                                                                           <  2:1602146/222‑1 (MQ=255)
                                                                       aCCCGATCCCCCGGTTTAAATTTGCGCACGCGGCTTCCCACAGCCACAACCGTCCCGGCGCATTCATGACCCAGGCCAATTTCTTGATTTGGGTCTTTAGGCGGAATAAACGGGCCTGATTCAAAACCATGTACATCTGAACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGc                                                                                                                                                                                                                                                                  <  1:1443049/231‑1 (MQ=255)
                                                                       aCCCGATCCCCCGGTTTAAATTTGCGCACGCGGCTTCCCACAGCCACAACCGTCCCGGCGCATTCATGACCCAGGCCAATTTCTTGATTTGGGTCTTTAGGCGGAATAAACGGGCCTGATTCAAAACCATGTACATCTGAACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTggtt                                                                                                                                                                                                        >  1:684009/1‑287 (MQ=255)
                                                                       aCCCGATCCCCCGGTTTAAATTTGCGCACGCGGCTTCCCACAGCCACAACCGTCCCGGCGCATTCATGACCCAGGCCAATTTCTTGATTTGGGTCTTTAGGCGGAATAAACGGGCCTGATTCAAAACCATGTACATCTGAACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCt                                                                                                                                                                                                        >  1:1585684/1‑289 (MQ=255)
                                                                            aTCCCCCGGTTTAAATTTGCGCACGCGGCTTCCCACAGCCACAACCGTCCCGGCGCATTCATGACCCAGGCCAATTTCTTGATTTGGGTCTTTAGGCGGAATAAACGGGCCTGATTCAAAACCATGTACATCTGAACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTgg                                                                                                                                                                                                          >  2:1062486/1‑282 (MQ=255)
                                                                                cccGGTTGAAATTTGCCCCCGCCGCTTCCCACCGCCACAACCGTCCCGGCGCATTCATGACCCAGGCCAATTTCTTGATTTGGGTCTTTAGGCGGAATAAACGGGCCTGATTCAAAACCATGTACATCTGAACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCa                                                                                                                                                                                               <  2:471814/289‑1 (MQ=255)
                                                                                               cgcACGCGGCTTCCCACAGCCACAACCGTCCCGGCGCATTCATGACCCAGGCCAATTTCTTGATTTGGGTCTTTAGGCGGAATAAACGGGCCTGATTCAAAACCATGTACATCTGAACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATtatttatt                                                                                                                                                                                                            >  1:947292/1‑261 (MQ=255)
                                                                                               cgcACGCGGCTTCCCACAGCCACAACCGTCCCGGCGCATTCATGACCCAGGCCAATTTCTTGATTTGGGTCTTTAGGCGGAATAAACGGGCCTGATTCAAAACCATGTACATCTGAACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCa                                                                                                                                                                                >  1:243153/1‑289 (MQ=255)
                                                                                                   cgcgGCTTCCCACAGCCACAACCGTCCCGGCGCATTCATGACCCAGGCCAATTTCTTGATTTGGGTCTTTAGGCGGAATAAACGGGCCTGATTCAAAACCATGTACATCTGAACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACgg                                                                                                                                                                            >  1:927399/1‑289 (MQ=255)
                                                                                                      ggCTTCCCACAGCCACAACCGTCCCGGCGCATTCATGACCCAGGCCAATTTCTTGATTTGGGTCTTTAGGCGGAATAAACGGGCCTGATTCAAAACCATGTACATCTGAACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGgag                                                                                                                                                                          <  2:1831919/288‑1 (MQ=255)
                                                                                                                          gTCCCGGCGCATTCATGACCCAGGCCAATTTCTTGATTTGGGTCTTTAGGCGGAATAAACGGGCCTGATTCAAAACCATGTACATCTGAACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGgaga                                                                                                                                                                         <  1:168384/269‑1 (MQ=255)
                                                                                                                          gTCCCGGCGCATTCATGACCCAGGCCAATTTCTTGATTTGGGTCTTTAGGCGGAATAAACGGGCCTGATTCAAAACCATGTACATCTGAACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTTGATTCCa                                                                                                                                                     >  1:1471120/1‑289 (MQ=255)
                                                                                                                          gTCCCGGCGCATTCATGACCCAGGCCAATTTCTTGATTTGGGTCTTTAGGCGGAATAAACGGGCCTGATTCAAAACCATGTACATCTGAACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCa                                                                                                                                                     >  1:39520/1‑289 (MQ=255)
                                                                                                                          gTCCCGGCGCATTCATGACCCAGGCCAATTTCTTGATTTGGGTCTTTAGGCGGAATAAACGGGCCTGATTCAAAACCATGTACATCTGAACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCa                                                                                                                                                     >  2:704804/1‑289 (MQ=255)
                                                                                                                           tCCCGGCGCATTCATGACCCAGGCCAATTTCTTGATTTGGGTCTTTAGGCGGAATAAACGGGCCTGATTCAAAACCATGTACATCTGAACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCaa                                                                                                                                                    >  1:618601/1‑289 (MQ=255)
                                                                                                                            cccGGCGCATTCATGACCCAGGCCAATTTCTTGATTTGGGTCTTTAGGCGGAATAAACGGGCCTGATTCAAAACCATGTACATCTGAACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGACTTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAAt                                                                                                                                                   >  2:969473/1‑289 (MQ=255)
                                                                                                                            cccGGCGCATTCATGACCCAGGCCAATTTCTTGATTTGGGTCTTTAGGCGGAATAAACGGGCCTGATTCAAAACCATGTACATCTGAACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAAt                                                                                                                                                   >  2:1197051/1‑289 (MQ=255)
                                                                                                                            cccGGCGCATTCATGACCCAGGCCAATTTCTTGATTTGGGTCTTTAGGCGGAATAAACGGGCCTGATTCAAAACCATGTACATCTGAACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAAt                                                                                                                                                   >  2:810679/1‑289 (MQ=255)
                                                                                                                             ccGGCGCATTCATGACCCAGGCCAATTTCTTGATTTGGGTCTTTAGGCGGAATAAACGGGCCTGATTCAAAACCATGTACATCTGAACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCGATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAAtg                                                                                                                                                  >  1:642240/1‑289 (MQ=255)
                                                                                                                                       cATGACCCAGGCCAATTTCTTGATTTGGGTCTTTAGGCGGAATAAACGGGCCTGATTCAAAACCATGTACATCTGAACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAg                                                                                                                                        <  2:1658693/289‑1 (MQ=255)
                                                                                                                                          gACCCAGGCCAATTTCTTGATTTGGGTCTTTAGGCGGAATAAACGGGCCTGATTCAAAACCATGTACATCTGAACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCaa                                                                                                                                     <  1:1562980/289‑1 (MQ=255)
                                                                                                                                              aaGGCCAAATTCTTGATTTGGGTCTTTACGCGGAATAAACGGGCCTGATTCAAAACCATGTACATCTGAACCACAAATACCGACATATTCTACTTTAATCAATACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGc                                                                                                                                 <  2:1727328/288‑1 (MQ=255)
                                                                                                                                                ggCCAATTTCTTGATTTGGGTCTTTAGGCGGAATAAACGGGCCTGATTCAAAACCATGTACATCTGAACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCg                                                                                                                                >  2:1917312/1‑288 (MQ=255)
                                                                                                                                                ggCCAATTTCTTGATTTGGGTCTTTAGGCGGAATAAACGGGCCTGATTCAAAACCATGTACATCTGAACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCg                                                                                                                                >  1:1302217/1‑288 (MQ=255)
                                                                                                                                                ggCCAATTTCTTGATTTGGGTCTTTAGGCGGAATAAACGGGCCTGATTCAAAACCATGTACATCTGAACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCg                                                                                                                                >  2:72639/1‑288 (MQ=255)
                                                                                                                                                ggCCAATTTCTTGATTTGGGTCTTTAGGCGGAATAAACGGGCCTGATTCAAAACCATGTACATCTGAACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCg                                                                                                                                >  1:304868/1‑288 (MQ=255)
                                                                                                                                                ggCCAATTTCTTGATTTGGGTCTTTAGGCGGAATAAACGGGCCTGATTCAAAACCATGTACATCTGAACCACAAATACCGACATATTCTACTTTAATAAAAACTTCATCCTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCCTCTGAATTTTTCATTTTGAATCCACCCGTATTCTTTATTGGCTACTGCATCAATACTTAAACTTTCAACGCAGACACCTTTGGTTTCGATCACAATGGTGGCGATAGCAATTGCGa                                                                                                                               >  2:433032/1‑289 (MQ=255)
                                                                                                                                                                    tCTTTAGGCGGAATAAACGGGCCTGATTCAAAACCATGTACATCTGAACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCGcccc                                                                                                            <  2:927399/288‑1 (MQ=255)
                                                                                                                                                                    tCTTTAGGCGGAATAAACGGGCCTGATTCAAAACCATGTACATCTGAACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCGcccc                                                                                                            <  1:1808822/288‑1 (MQ=255)
                                                                                                                                                                                aTAAACGGGCCTGATTCAAAACCATGTACATCTGAACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCGCCCCCAAAAGAATaaaa                                                                                               >  2:1647192/1‑288 (MQ=255)
                                                                                                                                                                                         cctgattCAAAACCATGTACATCTGAACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCGCCCCCAGAAGAATAAAGACTCCCGTa                                                                                      >  1:1245986/6‑289 (MQ=255)
                                                                                                                                                                                         cctgattCAAAACCATGTACATCTGAACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCGCCCCCAGAAGAATAAAGACCCCCGTa                                                                                      >  2:1042236/6‑289 (MQ=255)
                                                                                                                                                                                          ctgattCAAAACCATGTACATCTGAACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCGCCCCCAGAAGAATAAAGACTCCCGTa                                                                                      <  1:453167/284‑1 (MQ=255)
                                                                                                                                                                                           tgcttCAAAACCATGTACCTCTGAACCACAAATACCGACATATTCTCCTTTAAGCGAAACTTCATCTTCTTTATGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGACTCCACCCGTATTATTTATTGGCTACTGCACCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCGCCCCCAGAAGAATAAAGACTCCCGTAAc                                                                                    <  1:1397967/286‑1 (MQ=255)
                                                                                                                                                                                             attCAAAACCATGTACATCTGAACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACCTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCGCCCCCAGAAGAATAAAGACTCCCGTAACg                                                                                   >  1:82953/2‑288 (MQ=255)
                                                                                                                                                                                                cAAAACCATGTACATCTGAACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCGCCCCCAGAAGAATAAAGACTCCCGTAACGCCAt                                                                               <  1:704804/289‑1 (MQ=255)
                                                                                                                                                                                                cAAAACCATGTACATCTGAACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCGCCCCCAGAAGAATAAAGACTCCCGTAACGCCAt                                                                               <  1:1826467/289‑1 (MQ=255)
                                                                                                                                                                                                     ccATGTACATCTGAACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCGCCCCCAGAAGAATAAAGACTCCCGTAACGCCATAacta                                                                          <  2:611582/289‑1 (MQ=255)
                                                                                                                                                                                                       aTGTACATCTGAACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCGCCCCCAGAAGAATAAAGACTCCCGTAACGCCATAact                                                                           >  1:442570/1‑286 (MQ=255)
                                                                                                                                                                                                        tGTACATCTGAACCACAAATACCGACATCTTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTTCCCGCCCCTTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTAATGCATCAATACTTAAACTTTCAACGGAGAACCCTTTGGTTTCGATTCAAATGGTAGGAATACCAATTGCAACAAAAATTTAACCCGCCCCCAGAAGAGTAACTACTCCCGCAACGCCATCactacgg                                                                       >  2:25773/1‑287 (MQ=255)
                                                                                                                                                                                                        tGTACATCTGAACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCGCCCCCAGAAGAATAAAGACTCCCGTAAc                                                                                    <  2:630961/276‑1 (MQ=255)
                                                                                                                                                                                                        tGTACATCTGAACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCGCCCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTg                                                                       >  1:201715/1‑289 (MQ=255)
                                                                                                                                                                                                        tGTACATCTGAACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATGGAAACCGCCCCCAGAAGAATAAAACCTCCGGTAACGCCATAACTACTg                                                                       >  2:538031/1‑289 (MQ=255)
                                                                                                                                                                                                         gTACATCTGAACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATATTCGTTAGGCACTGGTATTTATGCTGAAATAATTTTCTTTGTGCCAGTCACCTGCAATATTGCGTTCGAATTTTTAATTTTGAATCCACCCGGCTTATTTATTGTCTACGGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGCTTCCACTGGTGGCGATAGCAATTGCGACAATAATTAAGACCGCCCCCAGAAAAATAAAGACACCCGAAACTCCacacctcctaa                                                                      >  2:1561957/1‑279 (MQ=255)
                                                                                                                                                                                                          tacatctgaaCCACAAATTACGACATATTCTTCTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTTCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCGCCCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTGag                                                                     <  2:657144/280‑1 (MQ=255)
                                                                                                                                                                                                          tacatctgaaCCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCGCCCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTGag                                                                     <  1:774778/280‑1 (MQ=255)
                                                                                                                                                                                                          tacatctgaaCCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCGCCCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTGag                                                                     <  2:1302217/280‑1 (MQ=255)
                                                                                                                                                                                                          tacatctgaaCCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCGCCCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTGag                                                                     <  1:1354149/280‑1 (MQ=255)
                                                                                                                                                                                                           acatctgaaCCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCGCCCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTGagc                                                                    <  1:1059296/281‑1 (MQ=255)
                                                                                                                                                                                                           acatctgaaCCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCGCCCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTGagc                                                                    <  1:277428/281‑1 (MQ=255)
                                                                                                                                                                                                               ctgaaCCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCGCCCCCAGAAGAATAAAGACTCCCGTAAc                                                                                    <  2:1372598/265‑1 (MQ=255)
                                                                                                                                                                                                               ctgaaCCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCGCCCCCAGAAGAATAAAGACTCCCGTAAc                                                                                    >  1:1372598/5‑269 (MQ=255)
                                                                                                                                                                                                                tgaaCCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCGCACCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTGagcaga                                                                 >  1:1091543/4‑286 (MQ=255)
                                                                                                                                                                                                                  aaCCACAAATACCGACATATTCTACTTTAATCAAACCTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCAc                                                                                                                                                                                                                          >  2:1778009/2‑132 (MQ=255)
                                                                                                                                                                                                                  aaCCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCGCCCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTGAGCAGCACt                                                              >  2:300705/2‑288 (MQ=255)
                                                                                                                                                                                                                  aaCCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTACATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCGCCCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTGAGCAGCACt                                                              >  1:1320683/2‑288 (MQ=255)
                                                                                                                                                                                                                   aCCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCGCCCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTGAGCAGCACTGc                                                            >  1:665677/1‑289 (MQ=255)
                                                                                                                                                                                                                    ccACAAATACCGACATATTCTACTTTAATCAAAACTTCCTCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCGCCCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTGAGCAGCACTGCa                                                           <  1:578029/289‑1 (MQ=255)
                                                                                                                                                                                                                    ccACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCGCCCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTGAGCAGCACTGCa                                                           <  2:665677/289‑1 (MQ=255)
                                                                                                                                                                                                                         caTACCGACATATTCTACTGTAATCAAAACTTCATCGTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCGCCCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTGAGCAGCACTGCAACGGc                                                      <  2:951437/288‑1 (MQ=255)
                                                                                                                                                                                                                         aaTACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCGCCCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACGTAGCAGCACCGCAACGGc                                                      >  2:1908945/1‑289 (MQ=255)
                                                                                                                                                                                                                           tACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCGCCCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTGAGCAGCACTGCAACGGCAt                                                    <  1:72639/289‑1 (MQ=255)
                                                                                                                                                                                                                                  atatTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCGCCCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTGAGCAGCACTGCAACGGCATAAGGTGc                                             <  2:401427/289‑1 (MQ=255)
                                                                                                                                                                                                                                         aCTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCGCCCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTGAGCAGCACTGCAACGGCATAAGGTGCGGCAAt                                       >  1:1727673/1‑288 (MQ=255)
                                                                                                                                                                                                                                          cTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACaataat                                                                                                                        >  1:1524787/1‑206 (MQ=255)
                                                                                                                                                                                                                                          cTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACaataat                                                                                                                        <  2:1524787/206‑1 (MQ=255)
                                                                                                                                                                                                                                          cTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCGCCCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTGag                                                                     <  1:400660/257‑1 (MQ=255)
                                                                                                                                                                                                                                          cTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCGCCCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTGAGCAGCACTGCAACGGCATAAGGTGCGGCAATa                                      >  2:1245614/1‑288 (MQ=255)
                                                                                                                                                                                                                                            ttAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTTAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCTACAATAATTGAAACCGCCCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTGAGCAGCACTGCAACGGCATAAGGTGCGGCAATACCa                                   <  1:1762876/289‑1 (MQ=255)
                                                                                                                                                                                                                                              aaTCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAACCCGCCCCCAGAAGAATAAAGACTCCCGTAACGCAATAACTACTGGGCAGCCATGCAACGGCAAAAGGTGCGGCAATAcc                                    >  2:39473/1‑286 (MQ=255)
                                                                                                                                                                                                                                               aTCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGgag                                                                                                                                                                          <  1:1014585/151‑1 (MQ=255)
                                                                                                                                                                                                                                               aTCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGgag                                                                                                                                                                          >  2:1014585/1‑151 (MQ=255)
                                                                                                                                                                                                                                               aTCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACa                                                                                                                             >  2:222450/1‑196 (MQ=255)
                                                                                                                                                                                                                                               aTCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCGCCCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTGAGCAGCACTGCAACGGCATAAGGTGCGGCAATACCACTg                                >  2:1432746/1‑289 (MQ=255)
                                                                                                                                                                                                                                                 aaaaaCTTCGTCTTCTCTAGGCACTGGTATGTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGTATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGGGATAGCAATTGCGACAATAATTGAAACCGCCCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTGTGCAGCACTGCAACGGCATAAGGTGCGGCAATACCACTGAt                              <  2:1478731/288‑1 (MQ=255)
                                                                                                                                                                                                                                                  aaaaCGTCATCTTCTTTAGTTCCTGGTATTTCTGTTGAAATAATTTTCATTGTGCCCAGCACCTGAAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCTTATTATTTATTGGCTCCTGCATCAATACTTAAACTTTCAACGGAAACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCGCCCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTGAGCAGCACTGCAACGGCATAAGGTGCGGCAATACCACGGAtt                             <  2:684009/289‑1 (MQ=255)
                                                                                                                                                                                                                                                         cATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCGCCCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTGAGCAGCACTGCAACGGCATAAGGTGCGGCAATACCACTGATTCGCCCTa                      <  2:126764/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                         tGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCGCCCCCAGAAGAATaaa                                                                                                >  2:752591/1‑199 (MQ=255)
                                                                                                                                                                                                                                                                         tGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCGCCCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTGag                                                                     >  2:453874/1‑226 (MQ=255)
                                                                                                                                                                                                                                                                         tGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCGCCCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTGAGCAGCACTGCAACGGCATAAGGTGCGGCAATACCACTGATTCGCCCTACCGCATTCGCCAGAcc      >  2:1879530/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                         tGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCGCCCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTGAGCAGCACTGCAACGGCATAAGGTGCGGCAATACCACTGATTCGCCCTACCGCATTCGCCAGAc       >  1:881479/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                          ggTATTTCTTCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATTTTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCGCCCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTGAGCAGCACTGCAACGGCATAAGGTGCGGCAATACCACTGATTCGCCCTACCGCATTCGCCAGACCg     <  2:1103658/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                          ggTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCGACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCGCCCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTGAGCAGCACTGCAACGGCATAAGGTGCGGCAATACCACTGATTCGCCCTACCGCATTCGCCAGACCg     <  2:244301/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                          ggTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCGCCCCCAGAAGAATAAAGACTCCCGTAACGCCATAacta                                                                          <  1:1141006/220‑1 (MQ=255)
                                                                                                                                                                                                                                                                          ggTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCGCCCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTGAGCAGCACTGCAACGGCATAAGGTGCGGCAATACCACTGATTCGCCCTACCGCATTCGCCAGACCg     >  1:1652588/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                          ggTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCGCCCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTGAGCAGCACTGCAACGGCATAAGGTGCGGCAATACCACTGATTCGCCCTACCGCATTCGCCAGACCg     >  2:88686/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                          ggTATTTCTGCCGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCCATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCGCCCCCAGAAGAATAAAGACTACCGTAACGCCATAACTACTTAGCAGCACCGCAACGGCATAAGGTTCGGCAATACCACTGAATCGCCCTACCGCATTCCCCTGACCg     >  2:134916/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                              tttCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCGCCCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTGAGCAGCACTGCAACGGCATAAGGTTCGGCAATACCAATCATTCGCCCCACCGCATTCCCCAACCCggca  >  2:1749244/1‑286 (MQ=255)
                                                                                                                                                                                                                                                                                     |||                                                                                                                                                                                                                                                                                      
CCGGGCAGATGTTATATTTGCCTTCCAGACAGTAACGACAGTGACCGCAAGGAACGCCAGGTTCGATATTTACCCGATCCCCCGGTTTAAATTTGCGCACGCGGCTTCCCACAGCCACAACCGTCCCGGCGCATTCATGACCCAGGCCAATTTCTTGATTTGGGTCTTTAGGCGGAATAAACGGGCCACTTTCAAAACCATGTACATCACTACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCACTAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTACTATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATACTAACCGCCCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTGAGCAGCACTGCAACGGCATAAGGTGCGGCAATACCACTGATTCGCCCTACCGCATTCGCCAGACCGGAG  >  CP042583/1540559‑1541116

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A