Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F210 I1 R1 4929 268.4 3907572 96.3% 3762991 273.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,541,962 3 bp→TGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,541,9620AT99.2% 632.0 / ‑6.7 270intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base A (1/0);  major base T (160/106);  minor base C (2/0);  total (163/107)
Fisher's exact test for biased strand distribution p-value = 5.20e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,541,9630CG99.6% 630.1 / NA 270intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (1/0);  new base G (161/107);  total (163/107)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,541,9640TA100.0% 642.9 / NA 270intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base A (163/107);  total (163/107)

Only 100 of 270 total aligned reads displayed.

TAGCGCCAGGCCAGCGCCGTAGCGATAAGGCTCAATATTGCAGGG‑ATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAAACTACAGAGCGGATAACTCCAGTTGCCAATAAAGGAAACCCGACTACTCCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGACTGAAAGCACCGACAA‑CCATGCTGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCG‑CCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCACTGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGATGGCAAACATACTACTATGCCAGCGGCAATCCGGTAAGCG  >  CP042583/1541684‑1542243
                                                                                                                                                                                                                                                                                        |||                                                                                                                                                                                                                                                                                         
aaGCGCCAGGCCGACGCCGAAGCGAAAAGCGACAATATTGAGGGG‑ATAAGAAGTTGTACCCGCCAGTGCCACTCTGCACTAATCAGCGGAGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCa                                                                                                                                                                                                                                                                                    <  2:937658/287‑1 (MQ=255)
     ccaggccagCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACa                                                                                                                                                                                                                                                                              >  2:544005/1‑289 (MQ=255)
     caggcccagCGCCGTAGCGATAAGCGAAAATATTGCAGGG‑AAGCGCATTCTTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCAATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACa                                                                                                                                                                                                                                                                              <  2:1435408/284‑1 (MQ=255)
          ccagCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCa                                                                                                                                                                                                                                                                         >  1:1585447/1‑288 (MQ=255)
               gcCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCAtcgag                                                                                                                                                                                                                                                                    <  1:926100/288‑5 (MQ=255)
               gcCGTAGAGATAA‑GCTAAAATTATCAGGGAATAAGCGGTTGGACCCGCCAGTTCCACTCAGCACTAATCATCCGCGTGAGTCCCATCGCTAGCAATGAACAAAGCGGATATGACCAGTGGCCAATAAATGAAAGCCGACTTGACCACGTTCCAGGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCAtcgag                                                                                                                                                                                                                                                                    <  2:1948164/288‑5 (MQ=255)
                        atacgcgaatatatTGCAGGG‑ATAAGCAGTTATACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGaa                                                                                                                                                                                                                                                          <  2:376307/279‑1 (MQ=255)
                         taagcgaaaaTATTCCGGGG‑ATAAGCATTTTTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGaa                                                                                                                                                                                                                                                          <  1:309090/280‑1 (MQ=255)
                           agcgacAATATTGCAGGG‑ATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATg                                                                                                                                                                                                                                                        >  1:1569949/6‑288 (MQ=255)
                              gacAATATTGCAGGG‑ATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGc                                                                                                                                                                                                                                                      <  1:1608382/285‑1 (MQ=255)
                                 aaTATTGCAGGG‑ATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATAAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGAATTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGGAAAGCTCCCAGCCCAACT‑CCCATCCCAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCAAGGCAATATGAATGGCCTCAt                                                                                                                                                                                                                                                 >  2:1746103/1‑289 (MQ=255)
                                  atatTGCAGGG‑ATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATa                                                                                                                                                                                                                                                <  1:1464841/289‑1 (MQ=255)
                                   tatTGCAGGG‑ATAAGCATTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATag                                                                                                                                                                                                                                               <  1:1330714/289‑1 (MQ=255)
                                     ttGCAGGG‑ATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATagag                                                                                                                                                                                                                                             <  1:637163/289‑1 (MQ=255)
                                              aTAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAAc                                                                                                                                                                                                                                      >  2:1059355/1‑288 (MQ=255)
                                              aTAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAAGAAGGAAATCCATATTCGGTGAGAACGCACCGACAA‑CCATCGAGCCAAAATGAATGGCCTCATAGAGGATGAAc                                                                                                                                                                                                                                      >  2:1890680/1‑288 (MQ=255)
                                                      ttGTACCCGCCAATTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCt                                                                                                                                                                                                                              >  1:1181193/1‑288 (MQ=255)
                                                        gTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCg                                                                                                                                                                                                                           >  2:659072/1‑289 (MQ=255)
                                                        gTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCg                                                                                                                                                                                                                           >  2:926606/1‑289 (MQ=255)
                                                        gTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCAATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTAACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCCGCAAACAGCGTAACCAGTAAAGATCCCAGCACAACA‑CCCATCACAAAACGGCCGGCAATACGGAAAGCCATATTCGGTGAGAACGCACCGACAA‑CCATCACGGCAATAGGAATGGCCTAATACAGGATGAACACATTTCTgag                                                                                                                                                                                                                           >  2:1544739/1‑287 (MQ=255)
                                                                cAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGttt                                                                                                                                                                                                                   >  1:1743911/1‑289 (MQ=255)
                                                                cAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGttt                                                                                                                                                                                                                   >  1:436118/1‑289 (MQ=255)
                                                                cAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGttt                                                                                                                                                                                                                   >  1:1813907/1‑289 (MQ=255)
                                                                cAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGttt                                                                                                                                                                                                                   >  2:830423/1‑289 (MQ=255)
                                                                cAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGttt                                                                                                                                                                                                                   >  1:744534/1‑289 (MQ=255)
                                                                              acaaagcAGCTGCGTGAGTCCCATCGCGATCAATGAAACAAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAatgatg                                                                                                                                                                                                     <  2:1145401/283‑1 (MQ=255)
                                                                              aCTAATCAGCGGCGTGAGTCCCATCGCTATCACTGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCAAGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAatgatg                                                                                                                                                                                                     <  2:903200/289‑1 (MQ=255)
                                                                                 aaTCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATgccg                                                                                                                                                                                                  <  1:830423/289‑1 (MQ=255)
                                                                                 aaTCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAAGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATgccg                                                                                                                                                                                                  <  1:235465/289‑1 (MQ=255)
                                                                                     aGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATgccg‑cc                                                                                                                                                                                               >  2:911756/1‑288 (MQ=255)
                                                                                     aGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATgccg‑cc                                                                                                                                                                                               <  1:911756/288‑1 (MQ=255)
                                                                                       cggcgTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATCTTCGGTGAGAAAGCACCGCCAACCCACGC‑GGCAATACTAATGGCCACATAGAAGAAGAACGCATTCCTGCGACCGGGTCTGTAGAGAATGATTCCG‑Cacac                                                                                                                                                                                            >  2:1597286/1‑288 (MQ=255)
                                                                                       cggcgTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCG‑Cccacc                                                                                                                                                                                           >  2:1614706/1‑289 (MQ=255)
                                                                                       cggcgTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCG‑Cccacc                                                                                                                                                                                           >  1:1293530/1‑289 (MQ=255)
                                                                                       cggcgTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCG‑Cccac                                                                                                                                                                                            >  2:151207/1‑288 (MQ=255)
                                                                                            tGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCG‑CCCACCAgcg                                                                                                                                                                                       <  2:603163/288‑1 (MQ=255)
                                                                                             gAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCG‑CCCACCAGCGCa                                                                                                                                                                                     <  1:688439/289‑1 (MQ=255)
                                                                                                    aTCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAAAGGCAGGCAATAAGGACATCCATATCCGGTGAGAAAGCACCCACAA‑CCATCGAGGCAATATGAATGGCCTCAAAGAGGAAGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCT‑CCCACCACAGCACCCAGaa                                                                                                                                                                              >  2:1675216/1‑289 (MQ=255)
                                                                                                          atcaatgaaCAGAGCGGATATTACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAAGAAGGACATCCATATTCGGCTAGAAAGCACCGCCAA‑CCAATGAGGCAAAATGAATTGCCTCATAGAGGATGAACGCCTTTATGAGACCGGCTTTTGCGCACATGACTCCGACGCACCGGCG‑ACCGAAGAACATTc                                                                                                                                                                        >  2:28514/9‑289 (MQ=255)
                                                                                                          atcaatgaaCAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGTTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTGGTCGCCAATGAGGCGG‑CCCACCCGCGAACCGACAAAAAtt                                                                                                                                                                         >  2:1173439/9‑288 (MQ=255)
                                                                                                             aatgaaCAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCCATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGCGGATGAACGCATTTCTGCGACCGGATTTGTCGCCACTGATGCCG‑CCCACCCGCCCACCGCGAAACATTCcg                                                                                                                                                                      >  2:213147/6‑288 (MQ=255)
                                                                                                             aatgaaCAGAGCGGAAACGAACAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCG‑CCCACCAGCGCACCGAGAAACATTCcgg                                                                                                                                                                     <  2:1569949/284‑1 (MQ=255)
                                                                                                                   cAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATgccg‑cc                                                                                                                                                                                               >  2:1526665/1‑257 (MQ=255)
                                                                                                                     gagCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCAt                                                                                                                                                                                                                                                                        >  1:1376202/1‑183 (MQ=255)
                                                                                                                     gagCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCAt                                                                                                                                                                                                                                                                        <  2:1376202/183‑1 (MQ=255)
                                                                                                                     gagCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGaa                                                                                                                                                                                                                                                          >  1:1169915/1‑197 (MQ=255)
                                                                                                                     gagCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCG‑CCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTg                                                                                                                                                             >  1:100939/1‑289 (MQ=255)
                                                                                                                     gagCGGATATGACCAGTTGCCAATAAAGGAAACCAGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCCGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACCAACCGGCAGGCAATAAGGAAATCCATATTCAGTGAGACAGCACCGACCA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTCCTGCGCCCGGCTCTGTTGCCAATGATGGGT‑CCCACCACCGCACCGAGACCCATTCAGGCGGtagcg                                                                                                                                                             >  2:1163895/1‑285 (MQ=255)
                                                                                                                            tatgaccAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCG‑CCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGct                                                                                                                                                       <  1:111491/283‑2 (MQ=255)
                                                                                                                             atgaccAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCG‑CCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGctga                                                                                                                                                     <  1:259899/285‑4 (MQ=255)
                                                                                                                                accAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCG‑CCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGctgagaa                                                                                                                                                  >  2:701648/2‑283 (MQ=255)
                                                                                                                                     ttGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCaa                                                                                                                                                                                                          >  2:329180/1‑229 (MQ=255)
                                                                                                                                     ttGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCaa                                                                                                                                                                                                          <  1:329180/229‑1 (MQ=255)
                                                                                                                                      tGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCG‑CCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTgg                                                                                                                                             <  1:1419580/288‑1 (MQ=255)
                                                                                                                                               aGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCG‑CCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGa                                                                                                                                   <  1:1087286/289‑1 (MQ=255)
                                                                                                                                               aGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCG‑CCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGa                                                                                                                                   <  1:733941/289‑1 (MQ=255)
                                                                                                                                                   aaCCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCa                                                                                                                                                                                                                                                  <  2:1766908/175‑1 (MQ=255)
                                                                                                                                                   aaCCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCG‑CCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTa                                                                                                                               <  1:659072/289‑1 (MQ=255)
                                                                                                                                                   aaCCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCG‑CCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTa                                                                                                                               >  1:549243/1‑289 (MQ=255)
                                                                                                                                                    aCCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCG‑CCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTAt                                                                                                                              <  1:1669457/289‑1 (MQ=255)
                                                                                                                                                    aCCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCACCCAGCCCAACT‑CCCATCACAAAACGGCAGGAAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCG‑CCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTAt                                                                                                                              <  1:505393/289‑1 (MQ=255)
                                                                                                                                                           ttgaccACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCG‑CCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCa                                                                                                                       >  2:502244/5‑289 (MQ=255)
                                                                                                                                                              accACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCG‑CCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTc                                                                                                                         >  2:521722/2‑284 (MQ=255)
                                                                                                                                                              accACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCG‑CCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGc                                                                                                                     >  1:1853554/2‑288 (MQ=255)
                                                                                                                                                                   gTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCG‑CCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAAc                                                                                                                >  1:1514564/1‑288 (MQ=255)
                                                                                                                                                                    ttCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCG‑CCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAAc                                                                                                                >  1:119489/1‑287 (MQ=255)
                                                                                                                                                                         cggtttCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCG‑CCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTgg                                                                                                                                             <  2:1306984/250‑1 (MQ=255)
                                                                                                                                                                         cGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCG‑CCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCa                                                                                                                  >  1:934158/1‑280 (MQ=255)
                                                                                                                                                                           aTTTATCCCGTGCAGATATTCACTGAACCCAGCAAACAGCGTAAACAATAAAGCTCCCAGCCCAACA‑CCCAGCACAAGACGGCAGGAAATAAGGAAATCCATTTTCGGTGAGAAAGCACCGCCAA‑CCATCGAGTCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCTAATGATGCCG‑CCCCCCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGc                                                                                                       <  2:896232/289‑1 (MQ=255)
                                                                                                                                                                             ttCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCTCAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCG‑CCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCt                                                                                                      >  1:1386434/1‑288 (MQ=255)
                                                                                                                                                                             ttCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACACAACGGCAGACAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATCTCTGCGACCGGTGTTGTCGCCAATGCTGTCG‑CCCACCAGCGCCCCGAGAAACATCCCGGCGGTCGTGATTGCTGAGAATGTGGCCGCGCGGGAATGATCTGACCAGCGCAACGCTTTct                                                                                                         >  2:729107/1‑284 (MQ=255)
                                                                                                                                                                                    gggCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCG‑CCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGAGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAgg                                                                                              >  1:1311879/1‑289 (MQ=255)
                                                                                                                                                                                     ggCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCAtcga                                                                                                                                                                                                                                                                     >  1:1538337/1‑119 (MQ=255)
                                                                                                                                                                                     ggCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCG‑CCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGa                                                                                             >  1:550106/1‑289 (MQ=255)
                                                                                                                                                                                         tatatTCGGGACAACCAACAACCCACCTAAACAGTAAGCACCCCAGCCCAACC‑CCCAACAACAAACGGCAGGCAATAAGGAACTCCGTATTCGGTGAGAAAGCACCGCAAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGCTGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCG‑CCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCaa                                                                                         <  2:256957/289‑1 (MQ=255)
                                                                                                                                                                                                ggTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCG‑CCCACCAgcg                                                                                                                                                                                       <  1:1257715/188‑1 (MQ=255)
                                                                                                                                                                                                ggTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCG‑CCCACCAgcg                                                                                                                                                                                       >  2:1257715/1‑188 (MQ=255)
                                                                                                                                                                                                             aaCAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCG‑CCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTcc                                                                     <  1:1052216/289‑1 (MQ=255)
                                                                                                                                                                                                                   gTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCG‑CCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAAGTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGAACAAGCCACCAACGGCATTACACcacgaga                                                               >  2:1005985/1‑284 (MQ=255)
                                                                                                                                                                                                                     aaCCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCG‑CCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATCTGGCTGTGGTGGTAATATCTGGCCAGCCCAACGCTTTCAGCTGCGCCAGGATCAAGCCACAAACGGCATGACACCAGCAGatc                                                             >  2:361450/1‑287 (MQ=255)
                                                                                                                                                                                                                          gTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCG‑CCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGAcaagcaa                                                        >  2:444242/1‑289 (MQ=255)
                                                                                                                                                                                                                            aaaGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCG‑CCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGAcaagcaag                                                       >  1:1228935/1‑288 (MQ=255)
                                                                                                                                                                                                                            aaaGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCG‑CCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCACAcaagcaag                                                       >  1:375111/1‑288 (MQ=255)
                                                                                                                                                                                                                              aGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCG‑CCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCa                                                    <  1:1642546/289‑1 (MQ=255)
                                                                                                                                                                                                                                  cccAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCG‑CCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGcc                                                     >  1:1717704/1‑284 (MQ=255)
                                                                                                                                                                                                                                     aGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCG‑CCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAACAAAGCCAAAcgcg                                              >  2:1110245/1‑288 (MQ=255)
                                                                                                                                                                                                                                          aaCT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCG‑CCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGATg                                        >  1:1616980/1‑289 (MQ=255)
                                                                                                                                                                                                                                            cT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCG‑CCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGAGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGATGGc                                      >  1:1444166/1‑289 (MQ=255)
                                                                                                                                                                                                                                                  aTCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCG‑CCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGa                                                                                                                                                            >  2:1870555/1‑166 (MQ=255)
                                                                                                                                                                                                                                                  aTCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCG‑CCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGa                                                                                                                                                            <  1:1870555/166‑1 (MQ=255)
                                                                                                                                                                                                                                                  aTCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCG‑CCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGATGGCAAACa                                 >  1:777422/1‑289 (MQ=255)
                                                                                                                                                                                                                                                         aaCGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCG‑CCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGATGGCAAACAttgctga                          >  2:411664/1‑283 (MQ=255)
                                                                                                                                                                                                                                                              caggcaATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCG‑CCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGATGGCAAACAttgatgaatgcc                     >  2:966189/1‑278 (MQ=255)
                                                                                                                                                                                                                                                              caggcaATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCG‑CCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCACACAACCAAGCCAAACGCCAACAAGCCAAACAtttatgaatgc                      >  2:1658469/1‑278 (MQ=255)
                                                                                                                                                                                                                                                                     tAAGGAAATCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCG‑CCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGATGGCAAACATTGATGAATGCCAGCGGCa              >  1:410759/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                            aTCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCG‑CCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTCCTCCAGCAGACAAGCAAGCCAAACGCGCCGATGGCAAAccttgatgaatgc                      >  2:1272072/1‑262 (MQ=255)
                                                                                                                                                                                                                                                                            aTCCATATTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCG‑CCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGATGGCa                                     <  1:899275/259‑1 (MQ=255)
                                                                                                                                                                                                                                                                                 tatTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCG‑CCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGcgac                                            >  1:454747/1‑247 (MQ=255)
                                                                                                                                                                                                                                                                                 tatTCGGTGAGAAAGCACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCG‑CCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGATGGCAAAAATTGATGAATGCCAGCGGCAATCCGATAAGCg  >  1:1070812/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                                 tatTCGGTGAGAAAGAACCGACAA‑CCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCG‑CCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGcgac                                            <  2:454747/247‑1 (MQ=255)
                                                                                                                                                                                                                                                                                        |||                                                                                                                                                                                                                                                                                         
TAGCGCCAGGCCAGCGCCGTAGCGATAAGGCTCAATATTGCAGGG‑ATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAAACTACAGAGCGGATAACTCCAGTTGCCAATAAAGGAAACCCGACTACTCCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACT‑CCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGACTGAAAGCACCGACAA‑CCATGCTGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCG‑CCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCACTGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGATGGCAAACATACTACTATGCCAGCGGCAATCCGGTAAGCG  >  CP042583/1541684‑1542243

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A