Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F210 I1 R1 4929 268.4 3907572 96.3% 3762991 273.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,542,094 3 bp→TGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,542,0940AT99.7% 730.6 / NA 307intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base A (0/0);  major base T (157/149);  minor base G (0/1);  total (157/150)
Fisher's exact test for biased strand distribution p-value = 4.89e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,542,0950CG99.7% 728.4 / NA 307intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/0);  major base G (157/149);  minor base T (0/1);  total (157/150)
Fisher's exact test for biased strand distribution p-value = 4.89e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,542,0960TA99.0% 707.8 / NA 307intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/1);  major base A (155/146);  minor base G (0/3);  total (157/150)
Fisher's exact test for biased strand distribution p-value = 1.17e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 307 total aligned reads displayed.

TTGCCAATAAAGGAAACCCGACTACTCCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCG‑‑GACTGAAAGCACCGACAACCATGCTGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCACTGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGA‑TGGCAAACATACTACTATGCCAGCGGCAATCCGGTAAGCGATCCAGCCGTGCACCACAATGCGGTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTATCGACCATCGCATCAA  >  CP042583/1541816‑1542373
                                                                                                                                                                                                                                                                                        |||                                                                                                                                                                                                                                                                                      
ttGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCG‑‑GTGAGAAAGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAAtgtg                                                                                                                                                                                                                                                                                 >  2:225899/1‑288 (MQ=255)
ttGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCG‑‑GTGAGAAAGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTgg                                                                                                                                                                                                                                                                                <  1:293273/289‑1 (MQ=255)
ttGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCG‑‑GTGAGAAAGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTgg                                                                                                                                                                                                                                                                                >  1:1448696/1‑289 (MQ=255)
  gCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCG‑‑GTGAGAAAGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCt                                                                                                                                                                                                                                                                              <  1:1087166/289‑1 (MQ=255)
     aaTAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCG‑‑GTGAGAAAGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCtgtg                                                                                                                                                                                                                                                                           <  1:1059355/289‑1 (MQ=255)
     aaTAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCG‑‑GTGAGAAAGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCtgtg                                                                                                                                                                                                                                                                           <  1:151207/289‑1 (MQ=255)
          aGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCG‑‑GTGAGAAAGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGa                                                                                                                                                                                                                                                                      >  1:1694556/1‑289 (MQ=255)
               aCCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCG‑‑GTGAGAAAGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTAt                                                                                                                                                                                                                                                                 <  1:167519/289‑1 (MQ=255)
                    acttgaccACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCG‑‑GTGAGAAAGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGt                                                                                                                                                                                                                                                             >  1:1609518/7‑288 (MQ=255)
                     cttgaccACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCG‑‑GTGAGAAAGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTc                                                                                                                                                                                                                                                            <  1:926606/283‑1 (MQ=255)
                         accACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCG‑‑GTGAGAAAGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGc                                                                                                                                                                                                                                                        >  1:1853554/2‑288 (MQ=255)
                         accACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCG‑‑GTGAGAAAGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGc                                                                                                                                                                                                                                                        >  2:530310/2‑288 (MQ=255)
                                      ttttCTACCGGGAAGATAGTACGTGAAACAAGCAAACAGCGTAACCATTAAAGCTCCCAGCACACCTCCCACCACAAACCGGCAGGCAATAAGGAAATCCATATTCG‑‑GTGAGAAAGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCCGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGc                                                                                                                                                                                                                                          <  2:1855083/288‑1 (MQ=255)
                                          cTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAGAAAGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATTTGGCTGTGGTGGAATTATCTGGCCAGCCCAACGCTTTCAGCt                                                                                                                                                                                                                                         >  1:719789/1‑288 (MQ=255)
                                          cTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCG‑‑GTGAGAAAGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTgc                                                                                                                                                                                                                                       >  2:906710/1‑288 (MQ=255)
                                               gggCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCG‑‑GTGAGAAAGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGAGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAgg                                                                                                                                                                                                                                 >  1:1311879/1‑289 (MQ=255)
                                                ggCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCG‑‑GTGAGAAAGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGa                                                                                                                                                                                                                                >  1:550106/1‑289 (MQ=255)
                                                  cATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCG‑‑GTGAGAAAGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATc                                                                                                                                                                                                                              >  1:73472/1‑289 (MQ=255)
                                                    tatatTCGGGACAACCAACAACCCACCTAAACAGTAAGCACCCCAGCCCAACCCCCAACAACAAACGGCAGGCAATAAGGAACTCCGTATTCG‑‑GTGAGAAAGCACCGCAAACCATCGAGGCAATATGAATGGCCTCATAGAGGCTGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCaa                                                                                                                                                                                                                            <  2:256957/289‑1 (MQ=255)
                                                           ggTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCG‑‑GTGAGAAAGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGccacca                                                                                                                                                                                                                     >  1:1171721/1‑289 (MQ=255)
                                                           ggTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCG‑‑GTGAGAAAGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGccacc                                                                                                                                                                                                                      <  1:451190/288‑1 (MQ=255)
                                                           ggTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCG‑‑GTGAGAAAGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGccacc                                                                                                                                                                                                                      >  2:451190/1‑288 (MQ=255)
                                                             ttaaacacgCAAACAGCGTAACAAGTAAAGATCCCAGCCCAACTCCCAACACAAAACGGCAGGCAATAAGGAAATCCATATTCG‑‑GGGAGAAAGCACCGACAACCAACGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCaa                                                                                                                                                                                                                    <  2:1302933/280‑1 (MQ=255)
                                                               aaaCCCGCAAACAGCATAACCAGTAAATCTCCCAGCCCAACTCCCATCACAAAACGGCAGGAAATAAGGAAATCCATATTCG‑‑GTGAGAAAGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACgg                                                                                                                                                                                                                 <  2:1553283/289‑1 (MQ=255)
                                                                aaCCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCG‑‑GTGAGAAAGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGcc                                                                                                                                                                                                                         >  2:373268/1‑280 (MQ=255)
                                                                 aCCAGAAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCG‑‑GTGAGAAAGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCa                                                                                                                                                                                                               <  1:415068/289‑1 (MQ=255)
                                                                              gTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCG‑‑GTGAGAAAGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCcagca                                                                                                                                                                                                    <  1:1371995/287‑1 (MQ=255)
                                                                                       aaaGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCG‑‑GTGAGAAAGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCACAcaagcaag                                                                                                                                                                                          >  1:375111/1‑288 (MQ=255)
                                                                                           cTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCG‑‑GTGAGAAAGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCaa                                                                                                                                                                                      >  1:1412098/1‑288 (MQ=255)
                                                                                             cccAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCG‑‑GTGAGAAAGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGATCGGTTTTGTCGCCAAGGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTTGTGATTGCTGAGAATGTGGCCGGGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGAGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAAc                                                                                                                                                                                    >  1:986945/1‑288 (MQ=255)
                                                                                                aGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCG‑‑GTGAGAAAGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCa                                                                                                                                                                                                               >  1:257976/1‑258 (MQ=255)
                                                                                                aGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCG‑‑GTGAGAAAGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAACAAAGCCAAAcgcg                                                                                                                                                                                 >  2:1110245/1‑288 (MQ=255)
                                                                                                aGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCG‑‑GTGAGAAAGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGGGGTGGACTTATCTGTCCAGCCCAACGCTTTCAGATGCGCGAGGACCAAGCCACCAAAGGCATTACTCCAGCAAAAAAGCAAGCCAAACGcga                                                                                                                                                                                >  2:1943954/1‑289 (MQ=255)
                                                                                                       cTCCCATCACCAAACGGCAGGCAATAAGGAAATCCATATTCG‑‑GTGAGAAAGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGA‑TGGc                                                                                                                                                                        <  1:906710/289‑1 (MQ=255)
                                                                                                        tcacaacaaaaaaCGGCAGGCAAAAAAGAAATCCATATTCG‑‑GTGAGAAAGCACCGACAACCAGCGAGGCAATATGAATGGCCTCATAAAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGA‑TGGCa                                                                                                                                                                       <  2:1585848/280‑1 (MQ=255)
                                                                                                            aTCACAAAACGGCAGGCAATAAGGAAATCCATATTCG‑‑GTGAGAAAGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGCCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCCACGGCACTACTCCAGCAGACACGCAAGCCAAACGCGACGA‑GGGAAcaca                                                                                                                                                                   >  2:1748200/1‑289 (MQ=255)
                                                                                                            aTCACAAAACGGCAGGCAATAAGGAAATCCATATTCG‑‑GTGAGAAAGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTGTTGTCGCCAATGATGCCGACCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGACAATGTGGCTGTGGTGGAAGTATCTGTCCAGCCCAAGGCTTTCAGCTGCGTGAGGATCAAGCCACCAACGGCATTCATCCCGCGTCCACACAATCCAAACGCCACAAGTGGCaaca                                                                                                                                                                    >  2:416542/1‑287 (MQ=255)
                                                                                                                        caggcaATAAGGAAATCCATATTCG‑‑GTGAGAAAGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGA‑TGGCAAACAttgatgaatgcc                                                                                                                                                       >  2:966189/1‑278 (MQ=255)
                                                                                                                                      aTCCATATTCG‑‑GTGAGAAAGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTCCTCCAGCAGACAAGCAAGCCAAACGCGCCGA‑TGGCAAAccttgatgaatgc                                                                                                                                                        >  2:1272072/1‑262 (MQ=255)
                                                                                                                                      aTCCATATTCG‑‑GTGAGAAAGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGA‑TGGCa                                                                                                                                                                       <  1:899275/259‑1 (MQ=255)
                                                                                                                                      aTCCATATTCG‑‑GTGAGAAAGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGA‑TGGCa                                                                                                                                                                       >  2:899275/1‑259 (MQ=255)
                                                                                                                                         cATATTCG‑‑GTGAGAAAGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGA‑TGGCAAACATTGATGAATGCCAGCGGCAATCCGGTAAg                                                                                                                                      <  1:820466/289‑1 (MQ=255)
                                                                                                                                                    tgagAAAGCACCGACCACCAGCGAGGGAATTGGAAGGGCCTCATAGAGGATGAACGCATTTCTGCGACCGAGTTTGTCGCCGATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGA‑TGGCAAACATTGATGAATGCCAGCGGCAATCCGGTAAGCGATCCAg                                                                                                                              <  2:1181193/285‑1 (MQ=255)
                                                                                                                                                    tgagAAAGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGA‑TGGCAAACATTGATGAATGCCAGCGGCAATCCGGTAAGCGATCCAg                                                                                                                              <  1:530310/285‑1 (MQ=255)
                                                                                                                                                    tgagAAAGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGA‑TGGCAAACATTGATGAATGCCAGCGGCAATCCGGTAAGCGATCCAg                                                                                                                              <  1:1037694/285‑1 (MQ=255)
                                                                                                                                                    tgagAAAGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGA‑TGGCAAACATTGATGAATGCCAGCGGCAATCCGGTAAGCGATCCAg                                                                                                                              >  1:1186253/4‑288 (MQ=255)
                                                                                                                                                    tgagAAAGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGA‑TGGCAAACATTGATGAATGCCAGCGGCAATCCGGTAAGCGATCCAg                                                                                                                              >  1:580703/4‑288 (MQ=255)
                                                                                                                                                        aaaGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGA‑TGGCAAACATTGATGAATGCCAGCGGCAATCCGGTAAGCGATCCAGCCGTg                                                                                                                         <  1:962394/289‑1 (MQ=255)
                                                                                                                                                         aaGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGA‑TGGCAAACATTGATGAATGCCAGCGGCAATCCGGTAAGCGATCCAGCCGTg                                                                                                                         <  1:757291/288‑1 (MQ=255)
                                                                                                                                                          aGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGA‑TGGCAAACATTGATGAATGCCAGCGGCAATCCGGTAAGCGATCCAGCCGTGca                                                                                                                       <  1:444242/289‑1 (MQ=255)
                                                                                                                                                          aGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGA‑TGGCAAACATTGATGAATGCCAGCGGCAATCCGGTAAGCGATCCAGCCGTGc                                                                                                                        >  1:1443753/1‑288 (MQ=255)
                                                                                                                                                                 aCAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGA‑TGGc                                                                                                                                                                        >  1:478083/1‑233 (MQ=255)
                                                                                                                                                                 aCAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGA‑TGGc                                                                                                                                                                        <  2:478083/233‑1 (MQ=255)
                                                                                                                                                                  caacatacgacgCAATATGAATGGCCTGATGGAGGATGAAAGGAGTACTCCGACCGGTTGTGTCGCCAATGCTACCGCTCACCGGGGCGACGAGAAACATGCCGGCGGTCGTGAAGGCTGAGAAGGTGGCTGGGGGGGAATTATCTGTCCAGGCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACACGAAAGCCAAACGCGACGA‑GGGCAAACATTGATGAATGCCAGCGGCAATCCGGTAAGCGATCCAGCCGTGCACCACAATg                                                                                                               <  2:679129/278‑1 (MQ=255)
                                                                                                                                                                    accatcgaggaaaTATGACTGGCCATATAGGGGATGACCGCATTTCGGCAACCGGTTTTGTCGCCAATGATGCCGCCCACCCGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGA‑TGGCAAACATTGATGAATGCCAGCGGCAATCCGGTAAGCGATCCAGCCGTGCACCACAATGCg                                                                                                             <  2:1443753/278‑1 (MQ=255)
                                                                                                                                                                    acacacggggaaaTATGAATGGCCTCTAAGAGGATGAAGCCATTCTTGCGACCGGTTTGGTCGCCAATGATGCCGCCCACCAGGCCACCGAGAAACATTCCGGCGGTCGTGATTGCTGTGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGA‑TGGCAAACATTGATGAATGCCAGCGGCAATCCGGTAAGCGATCCAGCCGTGCACCACAATGCg                                                                                                             <  2:1011725/278‑1 (MQ=255)
                                                                                                                                                                       atcgagtaaaaatGAATGGACACATAGAGTATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATTCCGCCCCCCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGA‑TGGCAAACATTGATGAATGCCAGCGGCAATCCGGTAAGCGATCCAGCCGTGCACCACAATGCGGtt                                                                                                          <  2:440082/278‑1 (MQ=255)
                                                                                                                                                                         cggggcacttggattGGCCTAATAGGGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGA‑TGGCAAACATTGATGAATGCCAGCGGCAATCCGGTAAGCGATCCAGCCGTGCACCACAATGCGGtttt                                                                                                        <  2:933164/275‑1 (MQ=255)
                                                                                                                                                                         cgaggcaaaagtaaTGTCCTCATATATGTTTAACGCATTTCTTCGACCGTTTTTGTCGCCAATGATTCCGCCCACCAGCGCACCGTGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGTCGA‑TGGCAAACATTGATGAATGCCAGCGGCAATCCGGTAAGCGATCCAGCCGTGCACCACAATGCGGtttt                                                                                                        <  1:1544739/277‑1 (MQ=255)
                                                                                                                                                                         cgaggCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGA‑TGGCAAACATTGATGAATGCCAGCGGCAATCCGGTAAGCGATCCAGCCGTGCACCACAATGCGGtttt                                                                                                        >  1:1011725/4‑289 (MQ=255)
                                                                                                                                                                                   tGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGA‑TGGCAAACATTGATGAATGCCAGCGGCAATCCGGTAAGCGATCCAGCCGTGCACCACAATGCGGTTTTGTTATCTGtt                                                                                              <  1:1658478/289‑1 (MQ=255)
                                                                                                                                                                                      aTGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGA‑TGGCAAACATTGATGAATGCCAGCGGCAATCCGGTAAGCGATCCAGCCGTGCACCACAATGCGGTTTTGTTATCTGTTCCa                                                                                           >  1:1358495/1‑289 (MQ=255)
                                                                                                                                                                                      aTGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGA‑TGGCAAACATTGATGAATGCCAGCGGCAATCCGGTAAGCGATCCAGCCGTGCACCACAATGCGGTTTTGTTATCTGTTCCa                                                                                           >  1:836900/1‑289 (MQ=255)
                                                                                                                                                                                           cTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTAt                                                                                                                                                                                                                                                                 >  1:1880151/1‑119 (MQ=255)
                                                                                                                                                                                            tCATAGAGGATGAACGCATTTCTGCGACCGGTTTTACAACAAACGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGACTGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGA‑TGGCAAACATTGATGAATGCCAGCGGCAATCCGGTAAGCGATCCAGCCGTGCACCACAATGCGGTTTTGTTATCTGTTCCATGCGAt                                                                                     <  1:1514799/289‑1 (MQ=255)
                                                                                                                                                                                             cATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGA‑TGGCAAACATTGATGAATGCCAGCGGAAATCCGGAAAGCCAACCGGCCGGGCACCACAATGGGGTTTTGTTATTTGTTCCATGCGATa                                                                                    >  2:16990/1‑289 (MQ=255)
                                                                                                                                                                                               tAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGA‑TGGCAAACATTGATGAATGCCAGCGGCAATCCGGTAAGCGATCCAGCCGTGCACCACAATGCGGTTTTGTTATCTGTTCCATGCGATAAc                                                                                  <  1:213147/289‑1 (MQ=255)
                                                                                                                                                                                                   ggATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGA‑TGGCAAACATTGATGAATGCCAGCGGCAATCCGGTAAGCGATCCAGCCGTGCACCACAATGCGGTTTTGTTATCTGTTCCATGCGATAACGtt                                                                               >  1:1276284/1‑288 (MQ=255)
                                                                                                                                                                                                   ggATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGA‑TGGCAAACATTGATGAATGCCAGCGGCAATCCGGTAAGCGATCCAGCCGTGCACCACAATGCGGTTTTGTTATCTGTTCCATGCGATAACGt                                                                                <  1:676385/287‑1 (MQ=255)
                                                                                                                                                                                                   ggATGAACGCAATGCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAACCATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGA‑TGGCAAACATTGATGAATGCCAGCGGCAATCCGGTAAGCGATCCAGCCGTGCACCACAATGCGGTTTTGTTATCTGTTCCATGCGATAACGt                                                                                <  2:1813907/287‑1 (MQ=255)
                                                                                                                                                                                                    gATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTTATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTACGCAAGGAACAAGCCACCAACGGCATTACTCCCGCAGACAAGCAAGCCACACGCGACGA‑TGGCAAACATTGAAGAAAGCCAGCGGCAATCCGGTAAGCGATCCAGCCGTTCACCCAAAAGCGGTTTTGTTATTCGTTCCAGTCGATAACGtt                                                                               >  2:1407039/1‑287 (MQ=255)
                                                                                                                                                                                                    gATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGA‑TGGCAAACATTGATGAATGCCAGCGGCAATCCGGTAAGCGATCCAGCCGTGCACCCCAAAGCGGTTTTGTTATCCGTTCCCTGCGATAACGTTc                                                                              >  2:504459/1‑288 (MQ=255)
                                                                                                                                                                                                    gATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGA‑TGGCAAACATTGATGAATGCCAGCGGCAATCCGGTAAGCGATCCAGCCGTGCACCACAATGCGGTTTTGTTATCTGTTCCATGCGATAACGtt                                                                               >  1:124458/1‑287 (MQ=255)
                                                                                                                                                                                                    gATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGA‑TGGCAAACATTGATGAATGCCAGCGGCAATCCGGTAAGCGATCCAGCCGTGCACCACAATGCGGTTTTGTTATCTGTTCCATGCGATAACGtt                                                                               >  1:1617320/1‑287 (MQ=255)
                                                                                                                                                                                                     agtaacgatgtgttGCGACCAGTGTTTGAGCAAATGGTGCCGCCCACCCGACCACCGGGACACATTCCGGCGTTCGTGATTGCGTGGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAATGCTTTGAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCTACGA‑TGGCAAACATTGATGAATGCCAGCGGCAATCCGGTAAGCGATCCAGCCGTGCACCACAATGCGGTTTTGTTATCTGTTCCATGCGATAACGTTc                                                                              <  2:1350609/274‑1 (MQ=255)
                                                                                                                                                                                                     aTGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAACCAAGCCAAACGCGACGC‑TGGCAAACATTGATGAATGCCAACGGCAATCCGGTAAGCAATCCAGCCGCGCACCACAATGCGGTTTTGTTTTCTGTTCAATGCTATACCGTTCCt                                                                            >  2:1652326/1‑289 (MQ=255)
                                                                                                                                                                                                      tGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGATGAGAATGTGGCTGTGGCGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGAGACGA‑TGACAAACATTGATGAATGCCAGCGGCAAACCGGTAAGCGATCCAGCCGTGCACCACAATGCGGTTTTGTTATCTGTTCCATGCGATAACGTTCCt                                                                            >  1:1141815/1‑288 (MQ=255)
                                                                                                                                                                                                       gAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGA‑TGGCAAACATTGATGAATGCCAGCGGCAATCCGGTAAGCGATCCAGCCGTGCACCACAATGCGGTTTTGTTATCTGTTCCATGCGATAACGTTCCCTc                                                                          >  1:3141/1‑289 (MQ=255)
                                                                                                                                                                                                        aaCGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGA‑TGGCAAACATTGATGAATGCCAGCTGCAATCCGGTAAGCGATCCAGCCGTGCCCCACAATGCGGTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCa                                                                         >  2:290970/1‑289 (MQ=255)
                                                                                                                                                                                                        aaCGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGA‑TGGCAAACATTGATGAATGCCAGCGGCAATCCGGTAAg                                                                                                                                      >  2:1383732/1‑228 (MQ=255)
                                                                                                                                                                                                          cGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGcgcg                                                                                                                                                                                                                                    >  1:1478990/1‑133 (MQ=255)
                                                                                                                                                                                                             aTTTCTGCGACGGTTTTCGACGCACATGATGCCGCCCACCAGCGACACGAGAAAAATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTAGCTGTCCAGCCCAACGCTTTCAGCTGCGCGGGGATAAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGA‑TGGCAAACATTGATGAATGCCAGCGGCAATCCGGTAAGCGATCCAGCCGTGCACCACAATGCGGTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGgaga                                                                    <  2:1311879/289‑1 (MQ=255)
                                                                                                                                                                                                              tttCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGA‑TGGCAAACATTGATGAATGCCAGCGGCAATCCGGTAAGCGATCCAGCCGTGCACCACAATGCGGTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGagag                                                                   >  1:336463/1‑289 (MQ=255)
                                                                                                                                                                                                                     aaCCGGTTTTGTCGCCAAGTGTGCCGCCCCCCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGA‑TGGCAAACATTGATGAATGCCAGCGGCAATCCGGTAAGCGATCCAGCCGTGCACCACAATGCGGTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTa                                                             <  2:149229/287‑1 (MQ=255)
                                                                                                                                                                                                                           ttttttCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCACCCCAACGCTTTCAGCTGCGCGAGAATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGA‑TGGCAAACATTGATGAATGCCAGCGGCAATCCGGTAAGCGATCCAGCCGTGCACCACAATGCGGTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATtcatca                                                      <  1:1595055/289‑1 (MQ=255)
                                                                                                                                                                                                                           ttttGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGCGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGA‑TGGCAAACATTGATGAATGCCAGCGGCAATCCGGTAAGCGATCAAGCCGTGCACCACAATGCGGTTTTGTTATCTGTTCCATGCGATAACGTTCCTCCAGGAGAGTGGTTATtcatca                                                      >  1:1735020/1‑289 (MQ=255)
                                                                                                                                                                                                                                   ccAATGGTGCCGCCCACGCGCCAACCGAGAAACAGTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCGGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGA‑TGGCAAACATTGATGAATGCCAGCGGCAATCCGGTAAGCGATCCAGCCGTGCACCACAATGCGGTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGt                                               <  2:580703/288‑1 (MQ=255)
                                                                                                                                                                                                                                        tatgCCGCCCACCCGCGCACCGAGAAACAGTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGA‑TGGCAAACATTGATGAATGCCAGCGGCAATCCGGTAAGCGATCCAGCCGTGCACCACAATGCGGTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCa                                         <  2:332161/288‑1 (MQ=255)
                                                                                                                                                                                                                                        gatgCCGCCACCCAGCGCACCGGGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGA‑TGGCAAACATTGATGAATGCCAGCGGCAATCCGGTAAGCGATCCAGCCGTGCACCACAATGCGGTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCa                                         <  2:777422/289‑1 (MQ=255)
                                                                                                                                                                                                                                          tgCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGA‑TGGCAAACATTGATGAATGCCAGCGGCAATCCGGTAAGCGATCCAGCCGTGCACCACAATGCGGTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGATTATTCATCAAAGTCGTAAGTCATg                                       <  1:225899/289‑1 (MQ=255)
                                                                                                                                                                                                                                              gccCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGc                                                                                                                                                                                                                <  2:147758/117‑1 (MQ=255)
                                                                                                                                                                                                                                              gccCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGA‑TGGCAAACATTGATGAATGCCAGCGGCAATCCGGTAAGCGATCCAGCCGTGCACCACAATGCGGTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATc                                    >  1:1806295/1‑288 (MQ=255)
                                                                                                                                                                                                                                                        gcACCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGA‑TGGCAAACATTGATGAATGCCAGCGGCAATACGGTAAGCGATCCAGCCGTGCACCACAATGCGGTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGc                         >  1:1634969/1‑289 (MQ=255)
                                                                                                                                                                                                                                                        gacccggagaaCATTCCGGCGGTCGGGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGA‑TGGCAAACATTGATGAATGCCAGCGGCAATCCGGTAAGCGATCCAGCCGTGCACCACAATGCGGTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTg                          <  2:1722745/279‑1 (MQ=255)
                                                                                                                                                                                                                                                          accggtaaaCATTCCGGGTGTCGTGGTTTCTGAGAATGTGGCTGTGTTGGAATTATCTGCCCAGCCCAACGCTTTCAGCTGCGCAAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGA‑TGGCAAACATTGATGAATGCCAGCGGCAATCCGGTAAGCGCTCCAGCCGTGCACCACAATGCGGTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCg                        <  2:1616980/282‑1 (MQ=255)
                                                                                                                                                                                                                                                          aCCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGA‑TGGCAAACATTGATGAATGCCAGCGGCAATCCGGTAAGCGATCCAGCCGTGCACCACAATGCGGTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCgg                       <  1:1207058/289‑1 (MQ=255)
                                                                                                                                                                                                                                                          aCCGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGA‑TGGCAAACATTGATGAATGCCAGCGGCAATCCGGTAAGCGATCCAGCCGTGCACCACAATGCGGTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCg                        <  2:1228935/288‑1 (MQ=255)
                                                                                                                                                                                                                                                            cGAGAAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGA‑TGGCAAACATTGATGAATGCCAGCGGCAATCCGGTAAGCGATCCAGCCGTGCACCACAATGCGGTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGtt                     <  1:1387976/289‑1 (MQ=255)
                                                                                                                                                                                                                                                              agaAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGA‑TGGCAAACATTGATGAATGCCAGCGGCAATCCGGTAAGCGATCCAGCCGTGCACCACAATGCAGTTTTGTTATCTGTTCCATGCGGTAACGTTCCTTCAGGAGGGTGGTTCATCATCAACGTCGTTAGTCATGATTCCTTTGATTCCGGtttt                   >  2:85477/1‑289 (MQ=255)
                                                                                                                                                                                                                                                              agaAACATTCCGGCGGTCGTGATTGCTGAGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGA‑TGGCAAACATGGATGAATGCCAGCGGCAATCCGGTAAGCGATCCAGCCGTGCACCACAATg                                                                                                               <  2:304744/197‑1 (MQ=255)
                                                                                                                                                                                                                                                                                        |||                                                                                                                                                                                                                                                                                      
TTGCCAATAAAGGAAACCCGACTACTCCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCG‑‑GACTGAAAGCACCGACAACCATGCTGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACATTCCGGCGGTCGTGATTGCACTGAATGTGGCTGTGGTGGAATTATCTGTCCAGCCCAACGCTTTCAGCTGCGCGAGGATCAAGCCACCAACGGCATTACTCCAGCAGACAAGCAAGCCAAACGCGACGA‑TGGCAAACATACTACTATGCCAGCGGCAATCCGGTAAGCGATCCAGCCGTGCACCACAATGCGGTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTATCGACCATCGCATCAA  >  CP042583/1541816‑1542373

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A