Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F210 I1 R1 4929 268.4 3907572 96.3% 3762991 273.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,569,252 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,569,2520GC99.4% 409.2 / NA 176intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (1/0);  new base C (80/95);  total (81/95)
Fisher's exact test for biased strand distribution p-value = 4.60e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,569,2530CG98.3% 402.5 / NA 176intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (3/0);  new base G (78/94);  total (81/95)
Fisher's exact test for biased strand distribution p-value = 9.72e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,569,2540TA99.4% 411.2 / NA 176intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (1/0);  new base A (80/95);  total (81/95)
Fisher's exact test for biased strand distribution p-value = 4.60e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 176 total aligned reads displayed.

CCAGGATGCTGCATGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTCTTTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGCATCACCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑GCTCGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGTTAACGCTGACCAGCGGCGCACACTCGGTAAGGCCATAGCCTTCCAGCAGATACTGTCCGGTCAGTTTCACCCAACGCTCTGCCACCACTTGCTGCACTGGCATCCCACCGCCTGCGGAAAGATGCAGACTGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGATAGCGGTAAACGGATATTTCGCTAACTCTTT  >  CP042583/1568974‑1569533
                                                                                                                                                                                                                                                                                       |||                                                                                                                                                                                                                                                                                        
ccAGGATGCTGCATGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTCTTTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGCATCACCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCg                                                                                                                                                                                                                                                                                  >  1:485108/1‑289 (MQ=255)
  aGGATGCTGCATGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTCTTTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGCATCACCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CCACGGCACCgg                                                                                                                                                                                                                                                                                 >  2:1881573/1‑288 (MQ=255)
   ggATGCTGCATGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTCTTTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGCATCCCCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCa                                                                                                                                                                                                                                                                               >  2:445110/1‑289 (MQ=255)
   ggATGCTGCATGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTCTTTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGCATCACCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCa                                                                                                                                                                                                                                                                               >  2:474580/1‑289 (MQ=255)
    gATGCTGCATGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTCTTTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTTATCGGTAGCATCGGGACGCTGCCAGTAACCCAGCATCACCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGCGGTAATTCATTATCATCATCATCCACCAGTTTGGCTTCCGTCGCT‑GGCACCGGCat                                                                                                                                                                                                                                                                              >  2:1642934/1‑288 (MQ=255)
    gATGCTGCATGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTCTTTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGCATCACCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCaa                                                                                                                                                                                                                                                                              >  2:1686649/1‑289 (MQ=255)
       gctgcATGACGACATCTTCAATCTCGTTGGGATCAACGTTAAAACCGGAAACCAGAATCATGTCTTCTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGCATCACCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAAcc                                                                                                                                                                                                                                                                           <  1:1747530/289‑1 (MQ=255)
         tgcATGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTCTTTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGCATCACCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGa                                                                                                                                                                                                                                                                         >  2:384880/1‑289 (MQ=255)
         tgcATGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTCTTTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGCATCACCTGCGGTCCTTTGACACAAAGCTCACCCGCTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGa                                                                                                                                                                                                                                                                         >  1:1604341/1‑289 (MQ=255)
            aTGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTCTTTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGCATCACCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATg                                                                                                                                                                                                                                                                       <  1:1299371/288‑1 (MQ=255)
            aTGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTCTTTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGCATCACCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGc                                                                                                                                                                                                                                                                      <  1:1759832/289‑1 (MQ=255)
            aTGACGACATCTTCAACCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTCTTTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGCATCACCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGc                                                                                                                                                                                                                                                                      <  2:811324/289‑1 (MQ=255)
             tGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTCTTTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGCATCACCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCt                                                                                                                                                                                                                                                                     <  1:549201/289‑1 (MQ=255)
                cgacATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTCTTTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGCATCACCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTAc                                                                                                                                                                                                                                                                   <  1:1453398/288‑1 (MQ=255)
                cgacATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTCTTTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGCATCACCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTAc                                                                                                                                                                                                                                                                   >  1:790811/1‑288 (MQ=255)
                 accATCTTCAATCTTGTTGGGGAAGACTTTAAAACCGGAAACCAGAATCCTGTCTTTTTTACGATAGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATATCGCAGGTGTGTAACCAGCCACTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGTATCACCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGAACCGGCAAACCGATGCTACCa                                                                                                                                                                                                                                                                 <  2:563233/287‑1 (MQ=255)
                   cATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTCTTTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGCATCACCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGa                                                                                                                                                                                                                                                                         >  2:1589370/1‑279 (MQ=255)
                   cATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTCTTTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGCATCACCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACt                                                                                                                                                                                                                                                               >  2:331842/1‑289 (MQ=255)
                     tCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTCTTTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGCATCACCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTAt                                                                                                                                                                                                                                                             >  2:886483/1‑289 (MQ=255)
                      catcaagatcGTTGGACAAGACGTTAAAACCGGATAGCAGAAGCATGTCTTTTTTACTATCGACAATGCGCAGGAATCCTTCGTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATTATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCGACATCACCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATg                                                                                                                                                                                                                                                            <  2:1901425/281‑1 (MQ=255)
                         cAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTCTTTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGCATCACCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATa                                                                                                                                                                                                                                                         <  1:1363811/289‑1 (MQ=255)
                           actccGTTGGGGTAGACGTTAAACCCGGAAACCCGAATCATGTCTTTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGCATCACCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAAt                                                                                                                                                                                                                                                       <  2:1011295/285‑1 (MQ=255)
                           aTCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTCTTTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGCATCACCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAAt                                                                                                                                                                                                                                                       <  2:1454203/289‑1 (MQ=255)
                              tcGTTGGGATAGACGTTAAAACCGGAAACCGGATTCATGTCTTTTTTACGATCGACAATGCGCAGGAATCCTTCTTCTTCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGCATCACCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCaa                                                                                                                                                                                                                                                    <  2:1000361/289‑1 (MQ=255)
                              tcGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTCTTTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGCATCACCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCaa                                                                                                                                                                                                                                                    <  2:400334/289‑1 (MQ=255)
                              tcGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTCTTTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGCATCACCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCaa                                                                                                                                                                                                                                                    <  1:663169/289‑1 (MQ=255)
                              tcGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTCTTTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGCATCACCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCaa                                                                                                                                                                                                                                                    <  1:1626998/289‑1 (MQ=255)
                              tcGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTCTTTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGCATCACCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCaa                                                                                                                                                                                                                                                    <  2:1122588/289‑1 (MQ=255)
                               cGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTCTTTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGCATCACCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAat                                                                                                                                                                                                                                                   <  1:1669973/289‑1 (MQ=255)
                               cGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTCTTTTTTACGATCGACAATGCGAAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGCATCACCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAat                                                                                                                                                                                                                                                   <  1:1004037/289‑1 (MQ=255)
                                      aTAGACGTTAAAACCGGAAACCAGAATCATGTCTTTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGCATCACCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCa‑ta                                                                                                                                                                                                                                            <  1:1809961/288‑1 (MQ=255)
                                           cGTTAAAACCGGAAACCAGAATCATGTCTTTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGCATCACCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGt                                                                                                                                                                                                                                       <  1:1937839/288‑1 (MQ=255)
                                            tgtAAAACCGGAAACCAGGATCATGTCTTTGTTACGATCGACAATGCGCAGGAAGCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGTGACGCTGCCAGTAACCCAGCCTCACCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCTGCAAACCGATGCTAc                                                                                                                                                                                                                                                                   <  2:1574782/258‑1 (MQ=255)
                                               aaaaCCGGAAACCAGAATCATGTCTTTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTTCCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGCATCACCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGTTAACg                                                                                                                                                                                                                                  <  1:1157084/289‑1 (MQ=255)
                                                      gAAACCAGAATCATGTCTTTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGCATCACCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCt                                                                                                                                                                                                                                                                     >  1:446677/1‑248 (MQ=255)
                                                      gAAACCAGAATCATGTCTTTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGCATCACCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATa                                                                                                                                                                                                                                                         >  1:1574782/1‑260 (MQ=255)
                                                                                     cgattggcAGGCATCCTTCGTCCTCCATTACCGCGTTGTCGCCTGGGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGCATCACCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGTTAACGCTGACCAGCGGCGCACACTCGGTAAGGCCATAGCCtt                                                                                                                                                                                             <  2:286692/282‑1 (MQ=255)
                                                                                     cAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCAGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGAGACGCTGCCAGTAACCCAGCATCACCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGTTAACGCTGACCAGCGGCGCACACTCGGTAAGGCCATAGCCtt                                                                                                                                                                                             <  1:135314/288‑1 (MQ=255)
                                                                                             aGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGCATCACCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGTTAACGCTGACCAGCGGCGCACACTCGGTAAGGCCATAGCCTTCCAGCAGAt                                                                                                                                                                                    >  1:1705701/1‑289 (MQ=255)
                                                                                                aaTCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGCATCACCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGTTAACGCTGACCAGCGGCGCACACTCGGTAAGGCCATAGCCTTCCAGCAGATa                                                                                                                                                                                   <  1:351294/287‑1 (MQ=255)
                                                                                                  tCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGCATCACCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGTTAACGCTGACCAGCGGCGCACACTCGGTAAGGCCATAGCCtt                                                                                                                                                                                             <  2:1560509/275‑1 (MQ=255)
                                                                                                  tCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGCATCACCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGTTAACGCTGACCAGCGGCGCACACTCGGTAAGGCCATAGCCtt                                                                                                                                                                                             >  1:1560509/1‑275 (MQ=255)
                                                                                                  tCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGCATCACCTGCGCTCCTTTGACACAAAGCTCACCCGTTTGACCTGGCCGTCCTTCATTATCATCATCATCCACCAGTTTGGCTTCCGG‑CCACGGCACCGGCAAACCGATGCTACCACTATGATAACCCATCTCA‑TATGGGTTAACGCCTACCAGCGGACCACACGCGGTAATGCCATTGCCCTCAAACAGATAcct                                                                                                                                                                                >  2:1860193/1‑286 (MQ=255)
                                                                                                    cttcttCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGCATCACCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGTTAACGCTGACCAGCGGCGCACACTCGGTAAGGCCATAGCCTTCCAGCAGATACCGTcc                                                                                                                                                                             >  2:1706691/1‑289 (MQ=255)
                                                                                                    cttcttCATCCATTACAGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGCATCACCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGTTAACGCTGACCAGCGGCGCACACTCGGTAAGGCCATAGCCTTCCAGCAGATACTGTcc                                                                                                                                                                             >  1:425750/1‑289 (MQ=255)
                                                                                                         tcATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGCATCACCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGTTAACGCTGACCAGCGGCGCACACTCGGTAAGGCCATAGCCTTCCAGCAGATACTGTCCGGTCa                                                                                                                                                                        >  2:1774963/1‑289 (MQ=255)
                                                                                                                    cgaggtGTCGCCGTGGTGTAACCTGACATTTTTGGATATTTCATCGGTAGCATCGTGACGCTGCCAGTAACCCAGCATCTCCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGTTAACGCTGACCAGCGGCGCACACTCGGTAAGGCCATAGCCTTCCAGCAGATACTGTCCGGTCAGTTTCACCCaa                                                                                                                                                             <  2:257636/284‑1 (MQ=255)
                                                                                                                     gcgATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGCATCACCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGTTAACGCTGACCAGCGGCGCACACTCGGCAAGGCCATAGCCTTCCAGCAGATACTGTCCGGTCAGTTTCACCCAAc                                                                                                                                                            <  1:1252182/289‑1 (MQ=255)
                                                                                                                      cgATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGCATCACCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGTTAACGCTGACCAGCGGCGCACACTCGGTAAGGCCATAGCCTTCCAGCAGATACTTTCCGGTCAGCTCCCCCCAAc                                                                                                                                                            >  2:828025/1‑288 (MQ=255)
                                                                                                                                tggttttacacAGTCATTTTTGGTGGTTTCGTCTAGAGCAGCGGAACGCTGCCAGTAACCCAGCATCACCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTGCATTATCACCATCATCCACCGGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGTTAACGCTGACCAGCGGCGCACACTCGGTAAGGCCATAGCCTTCCAGCAGATACTGTCCGGTCAGTTTCACCCAACGCTCTGccacc                                                                                                                                                 <  2:1739979/279‑1 (MQ=255)
                                                                                                                                         ccAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGCATCACCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGTTTAACGCCGACCAGCTGCTCACACTCGGTAACGCCATAGCCTTCCAGCAGATACTGTCCGTCCAGTTTCACCCACCCCTCTCCCACCACTtgcagc                                                                                                                                        >  2:1346956/1‑289 (MQ=255)
                                                                                                                                            gCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGCATCACCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGTTAACGCTGACCAgcggc                                                                                                                                                                                                                      >  2:591749/1‑208 (MQ=255)
                                                                                                                                            gCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGCATCACCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGTTAACGCTGACCAGCGGCGCACACTCGGTAAGGCAATAGCCTTCCAGCAGATACTGTCCGGTCAGTTTCCCCCAACCCTCTGCCCCCCCtttcggc                                                                                                                                        >  2:1874066/1‑281 (MQ=255)
                                                                                                                                                     gatgatTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGCATCACCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGTTAACGCTGACCAGCGGCGCACACTCGGTAAGGCCATAGCCTTCCAGCAGATACTGTCCGGTCAGTTTCACCCAACGCTCTGCCACCACTTGCTGCACTGGCATCCCa                                                                                                                            <  2:670711/289‑1 (MQ=255)
                                                                                                                                                                       aTCTGGACGCTGCCATGAACCCAGCATCACCTGCGGGCCTTTGACACAAAGCTCACCCTGTTGACCTGGTGGTACTTCAGTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGTTAACGCTGACCAGCGGCGCACACTCGGTAAGGCCATAGCCTTCCAGCAGATACTGTCCGGTCAGTTTCACCCAACGCTCTGCCACCACTTGCTGCACTGGCATCCCACCGCCTGCGGAAAGATg                                                                                                           <  2:425750/288‑1 (MQ=255)
                                                                                                                                                                                        aaCCCAGCATCACCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGTTAACGCTGACCAGCGGCGCACACTCGGTAAGGCCATAGCCTTCCAGCAGATACTGTCCGGTCAGTTTCACCCAACGCTCTGCCACCACTTGCTGCACTGGCATCCCACCGCCTGCGGAAAGATGCAGACTGGAGAAATcc                                                                                           <  1:756759/287‑1 (MQ=255)
                                                                                                                                                                                        aaCCCAGCATCACCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGTTAACGCTGACCAGCGGCGCACACTCGGTAAGGCCATAGCCTTCCAGCAGATACTGTCCGGTCAGTTTCACCCAACGCTCTGCCACCACTTGCTGCACTGGCATCCCACCGCCTGCGGAAAGATGCAGACTGGAGAAATcc                                                                                           <  1:414985/287‑1 (MQ=255)
                                                                                                                                                                                          cccAGCATCACCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGTTAACGCTGACCAGCGGCGCACACTCGGTAAGGCCATAGCCTTCCAGCAGATACTGTCCGGTCAGTTTCACCCAACGCTCTGCCACCACTTGCTGCACTGGCATCCCACCGCCTGCGGAAAGATGCAGACTGGAGAAATCCa                                                                                          >  2:1622695/1‑286 (MQ=255)
                                                                                                                                                                                             aGCATCACCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGTTAACGCTGACCAGCGGCGCACACTCGGTAAGGCCATAGCCTTCCAGCAGATACTGTCCGGTCAGTTTCACCCAACGCTCTGCCACCACTTGCTGCACTGGCATCCCACCGCCTGCGGAAAGATGCAGACTGGAGAAATCCAgct                                                                                       >  1:857431/1‑286 (MQ=255)
                                                                                                                                                                                             aGCATCACCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGTTAACGCTGACCAGCGGCGCACACTCGGTAAGGCCATAGCCTTCCAGCAGATACTGTCCGGTCAGTTTCACCCAACGCTCTGCCACCACTTGCTGCACTGGCATCCCACCCCCTGCGGCAAGCAGCAGACTGGATAAATCCAact                                                                                       >  2:1802035/1‑286 (MQ=255)
                                                                                                                                                                                               cATCACCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGTTAACGCTGACCAGCGGCGCACACTCGGTAAGGCCATAGCCTTCCAGCAGATACTGTCCGGTCAGTTTCACCCAACGCTCTGCCACCACTTGCTGCACTGGCATCCCACCGCCTGCGGAAAGATGCAGACTGGAGAAATCCAGCTGCTgg                                                                                  >  1:586345/1‑289 (MQ=255)
                                                                                                                                                                                                 tCACCTGCTGTCCTTGGCCACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGTTAACGCTGACCAGCGGCGCACACTCGGTAAGGCCATAGCCTTCCAGCAGATACTGTCCGGTCAGTTTCACCCAACGCTCTGCCACCACTTGCTGCACTGGCATCCCACCGCCTGCGGAAAGATGCAGACTGGAGAAATCCAGCTGCTGGaa                                                                                <  2:1408765/289‑1 (MQ=255)
                                                                                                                                                                                                 tCACCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGTTAACGCTGACCAGCGGCGCACACTCGGTAAGGCCATAGCCTTCCAGCAGATACTGTCCGGTCAGTTTCACCCAACGCTCTGCCACCACTTGCTGCACTGGCATCCCACCGCCTGCGGAAAGATGCAGACTGGAGAAATCCAGCTGCTGGaa                                                                                <  1:331842/289‑1 (MQ=255)
                                                                                                                                                                                                   aCCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGTTAACGCTGACCAGCGGCGCACACTCGGTAAGGCCATAGCCTTCCAGCAGATACTGTCCGGTCAGTTTCACCCAACGCTCTGCCACCACTTGCTGCACTGGCATCCCACCGCCTGCGGAAAGATGCAGACTGGAGAAATCCAGCTGCTGGAAct                                                                              <  1:1408350/289‑1 (MQ=255)
                                                                                                                                                                                                         agtccgtggtcccaAGGCTCCACCGGTTGACCTGGTTGTACTTCATTAGTATCATCATCCACAAGTTAGGCTACCGT‑CTACGGCACCGGCAAACCGATGCTCTCAGTATGATAATCAATGTCA‑TATGGGTTAACGCTGACCAGCGGCGCACATGAGGTAAGGCCATAGCCTTCCAGCAGATACTGTCCGTTCAGTTTCACTCAACGCTCTGCCACCACTTGCTGCTATGGCATCCCACCGCCTGCGGAAAGATGCAGACTGGAGAAACCCAGCTGCTGGCACTCTTTa                                                                         <  2:1187248/276‑1 (MQ=255)
                                                                                                                                                                                                              tttGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGTTAACGCTGACCAgcggcg                                                                                                                                                                                                                     <  2:1835864/143‑1 (MQ=255)
                                                                                                                                                                                                              tttGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGTTAACGCTGACCAgcggcg                                                                                                                                                                                                                     >  1:1835864/1‑143 (MQ=255)
                                                                                                                                                                                                               ttGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGTTAACGCTGACCAGCGGCGCACACTCGGTAAGGCCATAGCCTTCCAGCAGATACTGTCCGGTCAGTTTCACCCAACGCTCTGCCACCACTTGCTGCACTGGCATCCCACCGCCTGCGGAAAGATGCAGACTGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCa                                                                  >  1:1012712/1‑289 (MQ=255)
                                                                                                                                                                                                                  acacAAAGCTCACCCGGTTCACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGTTAACGCTGACCAGCGGCGCACACTCGGTAAGGCCATAGCCTTCCAGCAGATACTGTCCGGTCAGTTTCACCCAACGCTCTGCCACCACTTGCTGCACTGGCATCCCACCGCCTGCGGAAAGATGCAGACTGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCa                                                               <  1:309738/289‑1 (MQ=255)
                                                                                                                                                                                                                       aaacTCAACCGGTTGACCTGGCGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGTTAACGCTGACCAGCGGCGCACACTCGGTAAGGCAATAGCCTTCCAGCAGATACTGTCCGGTCAGTTTCACCCAACGCTCTGCCACCACTTGCTGCACTGGCATCCCACCGCCTGCGGAAAGATGCAGACTGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACgaa                                                          >  1:199581/4‑287 (MQ=255)
                                                                                                                                                                                                                       aaGCTCCCCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCAGCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGTTAACGCTGACCAGCGGCGCACACTCGGTAAGGCCATAGCCTTCCAGCAGATACTGTCCGGTCAGTTTCACCCAACGCTCTGCCACCACTTGCTGCACTGGCATCCCACCGCCTGCGGAAAGATGCAGACTGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCa                                                          <  2:1277040/289‑1 (MQ=255)
                                                                                                                                                                                                                       aaGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGTTAACGCTGACCAGCGGCGCACACTCGGTAAGGCCATAGCCTTCCAGCAGATACTGTCCGGTCAGTTTCACCCAACGCTCTGCCACCACTTGCTGCACTGGCATCCCACCGCCTGCGGAAAGATGCAGACTGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCa                                                          >  1:544366/1‑289 (MQ=255)
                                                                                                                                                                                                                        aGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGTTAACGCTGACCAGCGGCGCACACTCGGTAAGGCCATAGCCTTCCAGCAGATACTGTCCGGTCAGTTTCACCCAACGCTCTGCCACCACTTGCTGCACTGGCATCCCACCGCCTGCGGAAAGATGCAGACTGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCAt                                                         >  1:192776/1‑289 (MQ=255)
                                                                                                                                                                                                                             aaccGGTTGACCTGGTGATACTTCATTATCATCATCATCCACCAGTTTGGCTTCCAT‑CGACGGCACCGGCAAACCGATGCTACCACTAAGATAATCAATATCA‑TCTGGGTTAACGCTGACCAGCGGCGCACACTCGGGAAGGCCATAGCCTTCCAGCAGATACTGTCCGGTCAGTTTCACCCAACGCTCTGCCACCGCTTGCTGCGCTGGCAGCCCACCGCCTGCGGAAAGATGCAGACTGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAAc                                                    <  2:1226867/287‑1 (MQ=255)
                                                                                                                                                                                                                              cccGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGTTAACGCTGACCAGCGGCGCACACTCGGTAAGGCCATAGCCTTCCAGCAGATACTGTCCGGTCAGTTTCACCCAACGCTCTGCCACCACTTGCTGCACTGGCATCCCACCGCCTGCGGAAAGATGCAGACTGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAACa                                                   <  1:445110/289‑1 (MQ=255)
                                                                                                                                                                                                                                    tGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGTTAACGCTGACCAGCGGCGCACACTCGGTACGGCCATAGCCTTCCAGCAGATACTGTCCGGTCAGTTTCACCCAAAGCTCTGCCACCACTCGCTGCACTGGCATCCCACCGCCTGCGGAAAGATGCAGACTGGAGAAATCCAGCTGCTGCAATTCTTTATTGTTCAGCAACGAATTGAACAATgtgt                                             >  2:387134/1‑289 (MQ=255)
                                                                                                                                                                                                                                         tggtggTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGTTAACGCTGACCAGCGGCGCACACTCGGTAAGGCCATAGCCTTCCAGCAGATACTGTCCGGTCAGTTTCACCCAACGCTCTGCCACCACTTGCTGCACTGGCATCCCACCGCCTGCGGAAAGATGCAGACTGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAAc                                         >  1:924659/1‑288 (MQ=255)
                                                                                                                                                                                                                                            tggtACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGTTAACGCTGACCAGCGGCGCACACTCGGTAAGGCCATAGCCTTCCAGCAGATACTGTCCGGTCAGTTTCACCCAACGCTCTGCCACCACTTGCTGCACTGGCATCCCACCGCCTGCGGAAAGATGCAGACTGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGcc                                      <  1:1119659/288‑1 (MQ=255)
                                                                                                                                                                                                                                             ggtACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGTTAACGCTGACCAGCGGCGCACACTCGGTAAGGCCATAGCCTTCCAGCAGATACTGTCCGGTCAGTTTCACCCAACGCTCTGCCACCACTTGCTGCACTGGCATCCCACCGCCTGCGGAAAGATGCAGACTGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCg                                    >  1:842614/1‑289 (MQ=255)
                                                                                                                                                                                                                                                 cTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGTTAACGCTGACCAGCGGCGCACACTCGGTAAGGCCATAGCCTTCCAGCAGATACTGTCCGGTCAGTTTCACCCAACGCTCTGCCACCACTTGCTGCACTGGCATCCCACCGCCTGCGGAAAGATGCAGACTGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGAt                                >  2:398251/1‑289 (MQ=255)
                                                                                                                                                                                                                                                     aTTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGTTAACGCTGACCAGCGGCGCACACTCGGTAAGGCCATAGCCTTCCAGCAGATACTGTCCGGTCAGTTTCACCCAACGCTCTGCCACCACTTGCTGCACTGGCATCCCACCGCCTGCGGAAAGATGCAGACTGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGATAGCg                            >  1:965748/1‑289 (MQ=255)
                                                                                                                                                                                                                                                     aTTATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGTTAACGCTGACCAGCGGCGCACACTCGGTAAGGCCATAGCCTTCCAGCAGATACTGTCCGGTCAGTTTCACCCAACGCTCTGCCACCACTTGCTGCACTGGCATCCCACCGCCTGCGGAAAGATGCAGACTGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGATAGCg                            >  1:1427865/1‑289 (MQ=255)
                                                                                                                                                                                                                                                      ttATCATCATCATCCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGTTAACGCTGACCAGCGGCGCACACTCGGTAAGGCCATAGCCTTCCAGCAGATACTGTCCGGTCAGTTTCACCCAACGCTCTGCCACCACTTGCTGCACTGGCATCCCACCGCCTGCGGAAAGATGCAGACTGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGATAGCgg                           >  1:721824/1‑289 (MQ=255)
                                                                                                                                                                                                                                                         tcatcatcatcCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGTTAACGCTGACCAGCGGCGCACACTCGGTAAGGCCATAGCCTTCCAGCAGATACTGTCCGGTCAGTTTCACCCAACGCTCTGCCACCACTTGCTGCACTGGCATCCCACCGCCTGCGGAAAGATGCAGACTGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGATAGCGGTaa                        >  1:1527800/1‑289 (MQ=255)
                                                                                                                                                                                                                                                           ctcacgtcccaccaTGTGGGCTTCCGT‑CGACGGAACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGTTAACGCTGCCCAGCGGCGCACACTCGGTAAGGCCATAGCCTTCCAGCAGATACTGTCCGGTCAGTTTCACCCAACGCTCTGCCACCACTTGCTGCACTGGCATCCCACCGCCTGCGGAAAGATGCAGACTGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGATAGCGGTAAAc                      <  2:1094852/281‑1 (MQ=255)
                                                                                                                                                                                                                                                             catcatcCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGTTAACGCTGACCAGCGGCGCACACTCGGTAAGGCCATAGCCTTCCAGCAGATACTGTCCGGTCAGTTTCACCCAACGCTCTGCCACCACTTGCTGCACTGGCATCCCACCGCCTGCGGAAAGATGCAGACTGGAGAACTCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTTTTAACGCCCGTGATAGCGGTAACCgg                    >  2:957708/1‑289 (MQ=255)
                                                                                                                                                                                                                                                              atcatcCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGTTAACGCTGACCAGCGGCGCACACTCGGTAAGGCCATAGCCTTCCAGCAGATACTGTCCGGTCAGTTTCACCCAACGCTCTGCCACCACTTGCTGCACTGGCATCCCACCGCCTGCGGAAAGATGCAGACTGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGATAGCGGTAAACGGa                   >  1:834598/1‑289 (MQ=255)
                                                                                                                                                                                                                                                              atcatcCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGTTAACGCTGACCAGCGGCGCACACTCGGTAAGGCCATAGCCTTCCAGCAGATACTGTCCGGTCAGTTTCACCCAACGCTCTGCCACCACTTGCTGCACTGGCATCCCACCGCCTGCGGAAAGATGCAGACTGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGATAGCGGTAAACGGa                   >  2:713957/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                catcCACCAGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGTTAACGCTGACCAGCGGCGCACACTCGGTAAGGCCATAGCCTTCCAGCAGATACTGTCCGGTCAGTTTCACCCAACGCTCTGCCACCACTTGCTGCACTGGCATCCCACCGCCTGCGGAAAGATGCAGACTGGAGAAATCCAGCTGCTAGAACTCTTTATTGTCCAGCAACCCATTGAACAAGGTGTTACCGCCCGTTGTACCGGTAAACGGata                 >  2:1528380/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                   ccaccaGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGTTAACGCTGACCAGCGGCGCACACTCGGTAAGGCCATAGCCTTCCAGCAGATACTGTCCGGTCAGTTTCACCCAACGCTCTGCCACCACTTGCTGCACTGGCATCCCACCGCCTGCGGAAAGATGCAGACTGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGATAGCGGTAAACGGATAttt              >  2:411241/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                   ccaccaGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGTTAACGCTGACCAGCGGCGCACACTCGGTAAGGCCATAGCCTTCCAGCAGATACTGTCCGGTCAGTTTCACCCAACGCTCTGCCACCACTTGCTGCACTGGCATCCCACCGCCTGCGGAAAGATGCAGACTGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGATAGCGGTAAACGGATAttt              >  2:138083/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                     accaGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCa‑ta                                                                                                                                                                                                                                            >  1:1877619/1‑65 (MQ=255)
                                                                                                                                                                                                                                                                     accaGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGTTAACGCTGACCAGCGGCGCACACTCGGTAAGGCCATAGCCTTCCAGCAGATACTGTCCGGTCAGTTTCACCCAACGCTCTGCCACCACTTGCTGCACTGGCATCCCACCGCCTGCGGAAAGATGCAGACTGGAGAAATCCAgc                                                                                        >  2:1047473/1‑213 (MQ=255)
                                                                                                                                                                                                                                                                     accaGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGTTAACGCTGACCAGCGGCGCACACTCGGTAAGGCCATAGCCTTCCAGCAGATACTGTCCGGTCAGTTTCACCCAACGCTCTGCCACCACTTGCTGCACTGGCATCCCACCGCCTGCGGAAAGATGCAGACTGGAGAAATCCAgc                                                                                        <  1:1047473/213‑1 (MQ=255)
                                                                                                                                                                                                                                                                       caGTTTGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGTTAACGCTGACCAGCGGCGCACACTCGGTAAGGCCATAGCCTTCCAGCAGATACTGTCCGGTCAGTTTCACCCAACGCTCTGCCACCACTTGCTGCACTGGCATCCCACCGCCTGCGGAAAGATGCAGACTGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGATAGCGGTAAACGGATATTTCGCt          <  1:713535/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                          tttGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCATTATGGGTTAACGCTGACCAGCGGCGCACACTCGGTAAGGCCATAGCCTTcc                                                                                                                                                                                           <  2:1321379/110‑1 (MQ=255)
                                                                                                                                                                                                                                                                          tttGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCATTATGGGTTAACGCTGACCAGCGGCGCACACTCGGTAAGGCCATAGCCTTcc                                                                                                                                                                                           >  1:1321379/1‑110 (MQ=255)
                                                                                                                                                                                                                                                                          tttGGCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGTTAACGCTGACCAGCGGCGCACACTCGGTAAGGCCATAGCCTTCCAGCAGATACTGTCCGGTCAGTTTCACCCAACGCTCTGCCACCACTTGCTGCACTGGCATCCCACCGCCTGCGGAAAGATGCAGACTGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCATGATAGCGGTAAACGGATATTTCGCTaa        >  2:767900/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                             ggCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGTTAACGCTGACCAGCGGCGCACACTCGGTAAGGCCATAGCCTTCCAGCAGATACTGTCCGGTCAGTTTCACCCAACGCTCTGCCACCACTTGCTGCACTGGCATCCCACCGCCTGCGGAAAGATGCAGACTgg                                                                                                   >  1:453241/1‑194 (MQ=255)
                                                                                                                                                                                                                                                                             ggCTTCCGT‑CGACGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGTTAACGCTGACCAGCGGCGCACACTCGGTAAGGCCATAGCCTTCCAGCAGATACTGTCCGGTCAGTTTCACCCAACGCTCTGCCACCACTTGCTGCACTGGCATCCCACCGCCTGCGGAAAGATGCAGACTgg                                                                                                   <  2:453241/194‑1 (MQ=255)
                                                                                                                                                                                                                                                                                       |||                                                                                                                                                                                                                                                                                        
CCAGGATGCTGCATGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTCTTTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGCATCACCTGCGGTCCTTTGACACAAAGCTCACCCGGTTGACCTGGTGGTACTTCATTATCATCATCATCCACCAGTTTGGCTTCCGT‑GCTCGGCACCGGCAAACCGATGCTACCACTATGATAATCAATATCA‑TATGGGTTAACGCTGACCAGCGGCGCACACTCGGTAAGGCCATAGCCTTCCAGCAGATACTGTCCGGTCAGTTTCACCCAACGCTCTGCCACCACTTGCTGCACTGGCATCCCACCGCCTGCGGAAAGATGCAGACTGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGATAGCGGTAAACGGATATTTCGCTAACTCTTT  >  CP042583/1568974‑1569533

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A