Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F210 I1 R1 4929 268.4 3907572 96.3% 3762991 273.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,581,358 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,581,3580GC99.6% 638.9 / NA 274intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/1);  new base C (160/112);  total (160/114)
Fisher's exact test for biased strand distribution p-value = 4.14e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,581,3590CG100.0% 646.0 / NA 274intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base G (160/114);  total (160/114)
*CP0425831,581,3600TA98.9% 639.8 / NA 274intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base A (158/113);  minor base C (2/1);  total (160/114)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01

Only 100 of 274 total aligned reads displayed.

GACGCAGCACGCCCAACAGG‑TTGATCGGATCGAGGGTTTCCGGGACGATAATCGCCGGAGACGCGCTAGCAATCGCCGCCACATCAACGCCCTCTTCCAGCGCCACCAGCAGTTCTTTAGCACGTACAATACCGATGATTTCATCCAGTTCACCGCGACATACCGGGAACAGACTGTGCGGACTAGAGAGCAGTTGCTCGCGGATTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGGCTCGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATCAAACGCAGGATGGCATCGGCAGTACGCGCTCGCAGCGGCAAAGTGCTCTGGTGGCGAATAAAGTTGCGACGCGCAATCTGGTTAAACACTTCGATGATGATGCTGAAGCCAATCGCGGCATACAGGTAACCTTTCGGAATGTGGAAACCGAAAC  >  CP042583/1581081‑1581638
                                                                                                                                                                                                                                                                                       |||                                                                                                                                                                                                                                                                                       
gagacagcagTCCCAACAGG‑TTGATCGAACCGAGGGGTTCCGGGAAGATAATCGCCGGAGACGCCGAAGCAATCGCCGCCACATCAACGCCCTCTTCCAGCGCCACCAGCAGTTCTTTAGCACGTACAATACCGATGATTTCATCCAGTTCACCGCGACATACCGGGAACAGACTGTGCGGTGAAGAGAGCAGTTGCTCGCGGATTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAg                                                                                                                                                                                                                                                                                   <  2:1261324/282‑1 (MQ=255)
  cgCAGCACGCCCAACAGG‑TTGATCGGATCGAGGGTTTCCGGGACGATAATCGCCGGAGACGCCGAAGCAATCGCCGCCACATCAACGCCCTCTTCCAGCGCCACCAGCAGTTCTTTAGCACGTACAATACCGATGATTTCATCCAGTTCACCGCGACATACCGGGAACAGACTGTGCGGTGAAGAGAGCAGTTGCTCGCGGATTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCa                                                                                                                                                                                                                                                                              >  2:1405576/1‑289 (MQ=255)
          cgccAAAAGGTTTGATCGGATCTGGGGTTACCGCGACAATAATCGCCGGAGACGCCGAAGCAATCGCCGCCACATCAACGCCCGCTTCCAGCTCCACCGTCAGTTCTATAGCACGTACAAGACCGATGATTTCATCCAGTTCCCCGCGACAGACCGGGAACAGACTGTGCGGTGAAGAGAGCATTTGCTCGCGGATTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGcc                                                                                                                                                                                                                                                                       <  2:1582241/287‑1 (MQ=255)
            ccAACAGG‑TTGATCGGATCGAGGGTTTCCGGGACGATAATCGCCGGAGACGCCGAAGCAATCGCCGCCACATCAACGCCCTCTTCCAGCGCCACCAGCAGTTCTTTAGCACGTACAATACCGATGATTTCATCCAGTTCACCGCGACATACCGGGAACAGACTGTGCGGTGAAGAGAGCAGTTGCTCGCGGATTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGtt                                                                                                                                                                                                                                                                    >  2:650637/1‑289 (MQ=255)
              caCAGG‑TTAATCGGATCGAGGGGTTCCGGGACGGTAAGCGCCGGAGACGCCGAAGCAATCGCCGCCACATCAACGCCCTCTTCCAGCGCCACCAGCAGTTCTTTAGCACGTACAATACCGATGATTTCATCCAGTTCACCGCGACATACCGGGAACAGACTGTGCGGTGAAGAGAGCAGTTGCTCGCGGATTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTaa                                                                                                                                                                                                                                                                  <  2:1431703/288‑1 (MQ=255)
              aaCAGG‑TTGATCGGATCGAGGGTTTCCGGGACGATAATCGCCGGAGACGCCGAAGCAATCGCCGCCACATCAACGCCCTCTTCCAGCGCCACCAGCAGTTCTTTAGCACGTACAATACCGATGATTTCATCCAGTTCACCGCGACATACCGGGAACAGACTGTGCGGTGAAGAGAGCAGTTGCTCGCGGATTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTaa                                                                                                                                                                                                                                                                  <  2:317479/289‑1 (MQ=255)
              aaCAGG‑TTGATCGGATCGAGGGTTTCCGGGACGATAATCGCCGGAGACGCCGAAGCAATCGCCGACACATCAACGCCCTCTTCCAGCGCCACCAGCAGTTCTGTAGCACGTACAATACCGATGATTTCATCCAGTTCACCGCGACATACCGGGAACAGACTGTGCGGTGAAGAGAGCAGTTGCTCGCGGATTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTaa                                                                                                                                                                                                                                                                  <  1:1238522/289‑1 (MQ=255)
                     ttGATCGGATCGAGGGTTTCCGGGACGATAATCGCCGGAGACGCCGAAGCAATCGCCGCCACATCAACGCCCTCTTCCAGCGCCACCAGCAGTTCTTTAGCACGTACAATACCGATGATTTCATCCAGTTCACCGCGACATACCGGGAACAGACTGTGCGGTGAAGAGAGCAGTTGCTCGCGGATTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATc                                                                                                                                                                                                                                                                <  1:384422/285‑1 (MQ=255)
                     gtgggccgatacaGGGGTACCGGGACGAAAATGGGCGGGGAGGCCAAAGGAAGAGACGGCAGATCAACGACAGCTGCCAGCGCAACCAGCAGTTGGTTAGGACGGACAAGACCGGTAATTTCATCCAGTTCACCGCGACATACCGGGAACAGACTGTGGGGTGAAGAGAGCAGTTGCTCGCGGATTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATg                                                                                                                                                                                                                                                             <  2:221285/276‑1 (MQ=255)
                          cggatcgAGGGTTTCCGGGACGATAATCGCCGGAGACGCCGAAGCAATCGCCGCCACATCAACGCCCTCTTCCAGCGCCACCAGCAGTTCTTTAGCACGTACAATACCGATGATTTCATCCAGTTCACCGCGACATACCGGGAACAGACTGTGCGGTGAAGAGAGCAGTTGCCCGCGGATTTCATCGACCCCGAGATTAGCGTCACCCCAGCTTATTTCACCGCCC‑GGCGTACTGATCCCGCGCAGAGAACGCGCCGCCAGCCGCAAGCCGCCGGTAATCCCGGAACG‑t                                                                                                                                                                                                                                                      >  2:1939082/1‑289 (MQ=255)
                              tcgAGGGTTTCCGGGACGATAATCGCCGGAGACGCCGAAGCAATCGCCGCCACATCAACGCCCTCTTCCAGCGCCACCAGCAGTTCTTTAGCACGTACAATACCGATGATTTCATCCAGTTCACCGCGACATACCGGGAACAGACTGTGCGGTGAAGAGAGCAGTTGCTCGCGGATTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑ttctt                                                                                                                                                                                                                                                  >  1:102019/1‑289 (MQ=255)
                                     tttCCGGGCCGAGAAGCGCCGGAGACGCCGGAGCAATCGCCGCCACATCAACGCCCTCTTCCAGCGCCACCAGCAGTTCTTTAGCACGTACAATACCGATGATTTCATCCAGTTCACCGCGACATACCGGGAACAGACTGTGCGGTGAAGAGAGCAGTTGCTCGCGGATTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCgg                                                                                                                                                                                                                                            <  2:1386275/288‑1 (MQ=255)
                                       tCCGGGACGATAATCGCCGGAGACGCCGAAGCAATCGCCGCCACATCAACGCCCTCTTCCAGCGCCACCAGCAGTTCTTTAGCACGTACAATACCGATGATTTCATCCAGTTCACCGCGACATACCGGGAACAGACTGTGCGGTGAAGAGAGCAGTTGCTCGCGGATTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑tt                                                                                                                                                                                                                                                     >  1:990324/1‑277 (MQ=255)
                                       tCCGGGACGATAATCGCCGGAGACGCCGAAGCAATCGCCGCCACATCAACGCCCTCTTCCAGCGCCACCAGCAGTTCTTTAGCACGTACAATACCGATGATTTCATCCAGTTCACCGCGACATACCGGGAACAGACTGTGCGGTGAAGAGAGCAGTTGCTCGCGGATTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGGTAATCATGTAACGTttcttctcggaca                                                                                                                                                                                                                                          >  2:584021/1‑283 (MQ=255)
                                       tCCGGGACGATAATCGCCGGAGACGCCGAAGCAATCGCCGCCACATCAACGCCCTCTTCCAGCGCCACCAGCAGTTCTTTAGCACGTACAATACCGATGATTTCATCCAGTTCACCGCGACATACCGGGAACAGACTGTGCGGTGAAGAGAGCAGTTGCCCGCGGATTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGA‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCCGTACGCCGTTAATCATGGAACG‑TTCTTCTTCGGcca                                                                                                                                                                                                                                         >  2:879498/1‑287 (MQ=255)
                                                      gCCGGCGACGCGGAAGCAATCGCTGCAACGTCCACGCGCTCGTCCGTGGCAGCCAGGAGTTCGTTAGCACGTACACTAAAGATGATATCATGCAGTTCACCGCGACATCCCGGGAACAGACTGTGCGGTGGAGAGGGCAGTTGCTCGCGGATTTCATCGACCCCGAGATGAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGa                                                                                                                                                                                                                          <  2:1271524/289‑1 (MQ=255)
                                                         ggAGACGCCGAAGCAATCGCCGCCACATCAACGCCCTCTTCCAGCGCCACCAGCAGTTCTTTAGCACGTACAATACCGATGATTTCATCCAGTTCACCGCGACATACCGGGAACAGACTGTGCGGTGAAGAGAGCAGTTGCTCGCGGATTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCa                                                                                                                                                                                                                                    >  1:1010089/1‑276 (MQ=255)
                                                           agacgccgaaGCAATCGCCGCCACATCAACGCCCTCTTCCAGCGCCACCAGCAGTTCTTTAGCACGTACAATACCGATGATTTCATCCAGTTCACCGCGACATACCGGGAACAGACTGTGCGGTGAAGAGAGCAGTTGCTCGCGGATTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGGACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGatcggc                                                                                                                                                                                                                     >  1:1429201/10‑289 (MQ=255)
                                                                  gaaGCAATCGCCGCCACATCAACGCCCTCTTCCAGCGCCACCAGCAGTTCTTTAGCACGTACAATACCGATGATTTCATCCAGTTCACCGCGACATACCGGGAACAGACTGTGCGGTGAAGAGAGCAGTTGCTCGCGGATTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGAtcggcatcggca                                                                                                                                                                                                              <  1:684590/287‑1 (MQ=255)
                                                                           gccaccccacacaCGCCATCTGCCGCCGCCACCAGCAGTTCATGAGCACGTACAATGCCGATGATTTCATCCAGTCCACCGCGCCATACCGGGAACAGACTGGGCGGTGAAGAGAGCAGTTGCTCGCGGATTGCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTAt                                                                                                                                                                                                     <  2:102019/277‑1 (MQ=255)
                                                                                  caTCAACGCCCTCTTCCAGCGCCACCAGCAGTTCTTTAGCACGTACAATACCGATGATTTCATCCAGTTCACCGCGACGTACCGGGAACAGACTGTGCGGTGAAGAGAGCAGTTGCTCGCGGATTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATc                                                                                                                                                                                              <  1:1136295/289‑1 (MQ=255)
                                                                                                    gcgcCACCAGCAGTTCTTTAGCACGTACAATACCGATGATTTCATCCAGTTCACCGCGACATACCGGGAACAGACTGTGCGGTGAAGAGAGCAGTTGCTCGCGGATTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTg                                                                                                                                                                            >  1:1535009/1‑289 (MQ=255)
                                                                                                       ccaccaGCAGTTCTTTAGCACGTACAATACCGATGATTTCATCCAGTTCACCGCGACATACCGGGAACAGACTGTGCGGTGAAGAGAGCAGTTGCTCGCGGATTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACg                                                                                                                                                                         >  1:917950/1‑289 (MQ=255)
                                                                                                         accaGCAGTTCTTTAGCACGTACAATACCGATGATTTCATCCAGTTCACCGCGACATACCGGGAACAGACTGTGCGGTGAAGAGAGCAGTTGCTCGCGGATTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCCTCGGCATCGGGTTATCGCCATCGCGCTGAACATTGTCTTGACg                                                                                                                                                                         >  2:1440749/1‑287 (MQ=255)
                                                                                                         accaGCAGTTCTTTAGCACGTACAATACCGATGATTTCATCCAGTTCACCGCGACATACCGGGAACAGACTGTGCGGTGAAGAGAGCAGTTGCTCGCGGATTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGtt                                                                                                                                                                       >  2:1690986/1‑289 (MQ=255)
                                                                                                         accaGCAGTTCTTTAGCACGTACAATACCGATGATTTCATCCAGTTCACCGCGACATACCGGGAACAGACTGTGCGGTGAAGAGAGCAGTTGCTCGCGGATTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGACCGGCATCGGCATCGGGTTATCGGCATCGGGCTGAACATTGTCCTGACGtt                                                                                                                                                                       >  2:327957/1‑289 (MQ=255)
                                                                                                         accaGCAGTTCTTTAGCACGTACAATACCGATGATTTCATCCAGCTCACCGCGACATACCGGGAACAGACTGTGCGGTGAAGAGAGCAGTTGCTCGCGGATTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGtt                                                                                                                                                                       >  1:168272/1‑289 (MQ=255)
                                                                                                                    tttAGCACGTACAATACCGATGATTTCATCCAGTTCACCGCGACATACCGGGAACAGACTGTGCGGTGAAGAGAGCAGTTGCTCGCGGATTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATc                                                                                                                                                            <  1:758642/289‑1 (MQ=255)
                                                                                                                    tttAGCACGTACAATACCGATGATTTCATCCAGTTCACCGCGACATACCGGGAACAGACTGTGCGGTGAAGAGAGCAGTTGCTCGCGGATTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATc                                                                                                                                                            <  1:1880403/289‑1 (MQ=255)
                                                                                                                         cACGAACAATACCGCTGATGTTATCCAGTTCACCGCGACATACCGGGAAAAGAAGGGGCGGTGCAGAGGGCTGTTGCTCACGGATTCCAGCGACCCCGAGATTAGCAGCAACCCAGCTGATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATCAAACg                                                                                                                                                       <  2:1088452/289‑1 (MQ=255)
                                                                                                                              aCAATACCGATGATTTCATCCAGTTCACCGCGACATACCGGGAACAGACTGTGCGGTGAAGAGAGCAGTTGCTCGCGGATTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTTCTGAACCTTTGCCTGATGTTTCCCGGCCATCAAACCCAGGa                                                                                                                                                  >  2:756529/1‑289 (MQ=255)
                                                                                                                              aCAATACCGATGATTTCATCCAGTTCACCGCGACATACCGGGAACAGACTGTGCGGTGAAGAGAGCAGTTGCTCGCGGATTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGCTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATCAAACGCCGGa                                                                                                                                                  >  2:1668730/1‑289 (MQ=255)
                                                                                                                                       atgatTTCATCCAGTTCACCGCGACATACCGGGAACAGACTGTGCGGTGAAGAGAGCAGTTGCTCGCGGATTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑ttcttcttc                                                                                                                                                                                                                                              <  2:1915835/188‑1 (MQ=255)
                                                                                                                                       atgatTTCATCCAGTTCACCGCGACATACCGGGAACAGACTGTGCGGTGAAGAGAGCAGTTGCTCGCGGATTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGCTCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTTACGTTTCCCCCCCAACAAAAGCAGGATGGCCTCgc                                                                                                                                         >  2:968831/1‑288 (MQ=255)
                                                                                                                                       atgatTTCATCCAGTTCACCGCGACATACCGGGAACAGACTGTGCGGTGAAGAGAGCAGTTGCTCGCGGATTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCa                                                                                                                                                                                                >  1:866198/1‑234 (MQ=255)
                                                                                                                                       atgatTTCATCCAGTTCACCGCGACATACCGGGAACAGACTGTGCGGTGAAGAGAGCAGTTGCTCGCGGATTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCCTCAAACGCAGGATGGCATCg                                                                                                                                          >  1:1261814/1‑288 (MQ=255)
                                                                                                                                       atgatTTCATCCAGTTCACCGCGACATACCGGGAACAGACTGTGCGGTGAAGAGAGCAGTTGCTCGCGGATTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATCAAACGCAGGATGGCATCg                                                                                                                                          >  1:134085/1‑288 (MQ=255)
                                                                                                                                       atgatTTCATCCAGTTCACCGCGACATACCGGGAACAGACTGTGCGGTGAAGAGAGCAGTTGCTCGCGGATTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATCAAACGCAGGATGGCATCg                                                                                                                                          >  1:41372/1‑288 (MQ=255)
                                                                                                                                       atgatTTCATCCAGTTCACCGCGACATACCGGGAACAGACTGTGCGGTGAAGAGAGCAGTTGCTCGCGGATTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATCAAACGCAGGATGGCATCg                                                                                                                                          >  1:764484/1‑288 (MQ=255)
                                                                                                                                       atgatTTCATCCAGTTCACCGCGACATACCGGGAACAGACTGTGCGGTGAAGAGAGCAGTTGCTCGCGGATTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTATTAGGCAAATGCACCTCACGGGATCGGCATCGGCATCGGTTTCTCGGCATCGTGATGAACATTGGCCAGACGTTTCCCGCCACTCAACTGCAGGCTggatacg                                                                                                                                          >  2:1645007/1‑283 (MQ=255)
                                                                                                                                       atgatTTCATCCAGTTCACCGCGACATACCGGGAACAGACTGTGCGGTGAAGAGAGCAGTTACTCGCGGATTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTAATGCTCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACCCCGTCAATCCTGTAACG‑TTCGTCTTCGGCCATTGCCCCTTCCGGGAGCGGCATCGGCCTTGGGTTATCGGCGTTGCGATTATCATTGCCCTGACGTTTCCCTCCCACTAAACGCCTGAAGGCACCgg                                                                                                                                         >  2:311486/1‑289 (MQ=255)
                                                                                                                                            ttCATCCAGTTCACCGCGACATACCGGGAACAGACTGTGCGGTGAAGAGAGCAGTTGCTCGCGGATTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATCAAACGCAGGATGGCATCGGCAGt                                                                                                                                     >  1:1917171/1‑288 (MQ=255)
                                                                                                                                                    gTTCACCGCGACATACCGGGAACAGACTGTGCGGTGAAGAGAGCAGTTGCTCGCGGATTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATCAAACGCAGGATGGCATCGGCAGTACGCGCTc                                                                                                                             >  1:636191/1‑288 (MQ=255)
                                                                                                                                                               cATACCGGGAACAGACTGTGCGGTGAAGAGAGCAGTTGCTCGCGGATTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATCAAACGCAGGATGGCATCGGCAGTACGCGCTCGCAGCGGCAAAg                                                                                                                 >  1:1508370/1‑289 (MQ=255)
                                                                                                                                                                    cGGGAACAGACTGTGCGGTGAAGAGAGCAGTTGCTCGCGGATTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATCAAACGCAGGATGGCATCGGCAGTACGCGCTCGCAGCGGCAAAGtcg                                                                                                              >  1:576393/1‑285 (MQ=255)
                                                                                                                                                                    cGGGAACAGACTGTGCGGTGAAGAGAGCAGTTGCTCGCGGATTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATCAAACGCAGGATGGCATCGGCAGTACGCCCTCGCAGCGGCAAAGtcga                                                                                                             >  2:29846/1‑285 (MQ=255)
                                                                                                                                                                       gAACAGACTGTGCGGTGAAGAGAGCAGTTGCTCGCGGATTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATCAAACGCAGGATGGCATCGGCAGTACGCGCTCGCAGCGGCAAAGtcgactgg                                                                                                         >  1:324081/1‑282 (MQ=255)
                                                                                                                                                                             aCTGTGCGGTGAAGAGAGCAGTTGCTCGCGGATTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCAACGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATCAAACGCAGGATGGCTTCGGCAGTAAGCGCTCGCAGCGGCAAAGTGGAGTGGTGGCGa                                                                                                   >  1:1194103/1‑289 (MQ=255)
                                                                                                                                                                              cTGTGCGGTGAAGAGAGCAGTTGCTCGCGGATTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGc                                                                                                                                                                 >  2:1657088/1‑226 (MQ=255)
                                                                                                                                                                              cTGTGCGGTGAAGAGAGCAGTTGCTCGCGGATTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGc                                                                                                                                                                 <  1:1657088/226‑1 (MQ=255)
                                                                                                                                                                              cTGTGCGGTGAAGAGAGCAGTTGCTCGCGGATTTCATCGACCCCGAGA‑TAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATCAAACGCAGGATGGCATCGGCAGTACGCGCTCGCAGCGGCAAAGTCGACTGGTGGCGaa                                                                                                  <  1:502261/288‑1 (MQ=255)
                                                                                                                                                                                gtgcggtgaagagagCAGTTGCTCGCGGATTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATCAAACGCCGGATGGCATCGGCAGTACGGCCCCGCAGCGCCAACGTCGACTGGTGGCGGATa                                                                                                >  2:1805419/10‑289 (MQ=255)
                                                                                                                                                                                 tgcggtgaagagagCAGTTGCTCGCGGATTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATCaaa                                                                                                                                                         <  1:1403205/223‑1 (MQ=255)
                                                                                                                                                                                 tgcggtgaagagagCAGTTGCTCGCGGATTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATCAAACGCAGGATGGc                                                                                                                                              <  2:1937845/234‑1 (MQ=255)
                                                                                                                                                                                        aagagagCAGTTGCTCGCGGATTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATCAAACGCAGGATGGCATCGGCAGTACGCGCCCGCAGCGGCAAAGTCGACTGGCGGCGACTAAAGTGGCg                                                                                        >  2:211983/2‑289 (MQ=255)
                                                                                                                                                                                           agagCAGTTGCTCGCGGATTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATCAAACGCAGGATGGCATCGGCAGTCCGCGCTCGCCGCGGCCAAGTCGACTGGTTGGCAATAAAATTTCgcc                                                                                      >  2:1075099/1‑286 (MQ=255)
                                                                                                                                                                                           agagCAGTTGCTCGCGGATTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATCAAACGCAGGATGGCATCGGCAGTACGCGCTCGCAGCGGCAAAGTCGACTGGTGGCGAATAAAGTTGCGAcg                                                                                     >  1:515417/1‑289 (MQ=255)
                                                                                                                                                                                            gagCAGTTGCTCGCGGATTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATCAAACGCAGGATGGCATCGGCAGTACGCGCTCGCAGCGGCAAAGTCGACTGGTGGCGAATAAAGTTGCGAcg                                                                                     <  1:1835150/288‑1 (MQ=255)
                                                                                                                                                                                              gCAGTTGCTGGCGGATTGCCTCGCCCCCGAGATTAGCGTCACCCCAGCTTCTTTCACCGCGC‑GGCGTCATGATCCCGAGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATCAAACGCAGGATGGCATCGGCAGTACGCGCTCGCAGCGGCAAAGTCGACTGGTGGCGAATAAAGTTGCGAcgcg                                                                                   <  2:1518817/288‑1 (MQ=255)
                                                                                                                                                                                                aGTTGCTCGCGGATTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACCTTGGCCTGACGTTTCCCGCCCATCAAACGCCGGATGGCATCGGCAGTACGCGCTACCAGCGGCAAAGTCTAATGGTGGCGGATAGAGGTGCGTCGCGCaa                                                                                >  2:147970/1‑289 (MQ=255)
                                                                                                                                                                                                  ttGCTCGCGGATTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGTCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATCAAACGCAGGATGGCATCGGCAGTACGCGCTCGCAGCGGCAAAGTCGACTGGTGGCGAATAAAGTTGCGACGCGCAATc                                                                              <  1:1841489/289‑1 (MQ=255)
                                                                                                                                                                                                   tGCTCGCGGATTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATCAAACGCAGGATGGCATCGGCAGTACGCGCTCGCAGCGGCAAAGTCGACTGGTGGCGAATAAAGTTGCGACGCGCaa                                                                                <  1:813035/286‑1 (MQ=255)
                                                                                                                                                                                                        gcgGCTTTTCTCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATCAAACGCAGGATGGCATCGGCAGTACGCGCTCGCAGCGGCAAAGTCGACTGGTGGCGAATAAAGTTGCGACGCGCAATCTGGTTa                                                                        <  2:1819962/289‑1 (MQ=255)
                                                                                                                                                                                                          ggATTTCATCGACCCCGAGATTAGCGTCAACCCATCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGAAGAGAACGCGACTCCATCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCTGCAAATGCACCTTCCGGGATCGGCATCTGCATCGGGTTATCGGCATCTTGCTTAACATTTTCCTGACGTTTCCCGCCCATCAAACGCAGGATGGCATCGGCAGTACGCGCTCGCAGCGGCAATGTCGACTGGTGGCGAATAAAGTTGCGACGCGCAATCTGGTTaa                                                                       <  1:1442914/288‑1 (MQ=255)
                                                                                                                                                                                                          ggATTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGACCGCGACGCCAGCGTCAGTACGCTGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATCAAACGCAGGATGGCATCGGCAGTACGCGCTCGCAGCGGCAAAGTCGACTGGTGGCGAATAAAGTTGCGACGCGCAATCTGGTTaaa                                                                      <  1:1111388/289‑1 (MQ=255)
                                                                                                                                                                                                          ggATTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCg                                                                                                                                                                                                                                             <  2:356304/122‑1 (MQ=255)
                                                                                                                                                                                                            aTTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATCAAACGCAGGATGGCATCGGCAGTACGCGCTCGCAGCGGCAAAGTCGACTGGTGGCGAATAAAGTTGCGACGCGCAATCTGGTTAAac                                                                     >  1:476998/1‑288 (MQ=255)
                                                                                                                                                                                                              ttCATGGACCCCGCGCATGGCGCCAACCCAGCTTATTTCCCCGCCG‑GGCGTCATGGTCCCGGGCAGAGAACGAGCAGCCAGCGTCAGTACGCCGTTACTCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTAGCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATCAAACGCAGGATGGCATCGGCAGTACGCGCTCGCAGCGGCAAAGTCGACTGGTGGCGAATAAAGTTGCGACGCGCAATCTGGTTAAACACt                                                                  <  2:1863986/289‑1 (MQ=255)
                                                                                                                                                                                                              ttCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATCAAACGCAGGATGGCATCGGCAGTACGCGCTCGCAGCGGCAAAGTCGACTGGTGGCGAATAAAGTTGCGACGCGCAATCTGGTTAAACACt                                                                  <  2:764484/289‑1 (MQ=255)
                                                                                                                                                                                                                  ccagccccGAGATTAGCGCCAACCCAGCTTAGTTAACCGGGC‑GGGGTCATGATCCCGCGCAGAGAACGCGACGCCGGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATCAAACGCAGGATGGCATCGGCAGTACGCGCTCGCAGCGGCAAAGTCGACTGGTGGCGAATAAAGTTGCGACGCGCAATCTGGTTAAACACTTCga                                                              <  2:1052492/285‑1 (MQ=255)
                                                                                                                                                                                                                    gACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATCAAACGCAGGATGGCATCGGCAGTACGCGCTCGCGGCGGCAAAGTCGACTGGTGGCGAATAAAGTTGCGACGCGCAATCTGGTTAAACACTTCgatg                                                            <  2:636191/289‑1 (MQ=255)
                                                                                                                                                                                                                      ccccGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATCAAACGCAGGATGGCATCGGCAGTACGCGCTCGCAGCGGCAAAGTCGACTGGTGGCGAATAAAGTTGCGACGCGCAATCTGGTTAAACACTTCgatgat                                                          <  1:1588206/289‑1 (MQ=255)
                                                                                                                                                                                                                         cGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATCAAACGCAGGATGGCATCGGCAGTACGCGCTCGCAGCGGCAAAGTCGACTGGTGGCGAATAAAGTTGCGACGCGCAATCTGGTTAAACACTTCgatgatga                                                        >  1:35317/1‑288 (MQ=255)
                                                                                                                                                                                                                          gagaTTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATCAAACGCAGGATGGCATCGGCAGTACGCGCTCGCAGCGGCAAAGTCGACTGGTGGCGAATAAAGTTGCGACGCGCAAt                                                                               >  1:1377867/1‑264 (MQ=255)
                                                                                                                                                                                                                          gagaTTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATCAAACGCAGGATGGCATCGGCAGTACGCGCTCGCAGCGGCAAAGTCGACTGGTGGCGAATAAAGTTGCGACGCGCAATCTGGTTAAACACTTCgatgatgatc                                                      >  1:1365752/1‑288 (MQ=255)
                                                                                                                                                                                                                               tAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATCAAACGCAGGATGGCATCGGCAGTACGCGCTCGCAGCGGCAAAGTCGACTGGTGGCGAATAAAGTTGCGACGCGCAATCTGGTTAAACACTTCgatgatgatcgagaa                                                 <  2:490439/289‑7 (MQ=255)
                                                                                                                                                                                                                                  cGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCa                                                                                                                                                                                                                                    <  1:1090557/107‑1 (MQ=255)
                                                                                                                                                                                                                                  cGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATCAAACGCAGGATGGCATCGGCAGTACGCGCTCGCAGCGGCAAAGTCGACTGGTGGCGAATAAAGTTGCGACGCGCAATCTGGTTAAACACTTCGATGATGATCGAGAAGcc                                              >  2:1538491/1‑289 (MQ=255)
                                                                                                                                                                                                                                     cAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATCAAACGCAGGATGGCATCGGCAGTACGCGCTCGCAGCGGCAAAGTCGACTGGTGGCGAATAAAGTTGCGACGCGCAATCTGGTTAAACACTTCGATGATGATCGAGAAGCCaa                                            <  1:650637/288‑1 (MQ=255)
                                                                                                                                                                                                                                     cAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATCAAACGCAGGATGGCATCGGCAGTACGCGCTCGCAGCGGCAAAGTCGACTGGTGGCGAATAAAGTTGCGACGCGCAATCTGGTTAAACACTTCGATGATGATCGAGAAGCCAAt                                           <  1:1067869/289‑1 (MQ=255)
                                                                                                                                                                                                                                      aaCCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATCAAACGCAGGATGGCATCGGCAGTACGCGCTCGCAGCGGCAACGTCGACTGGTGGCGAATAAAGTTGCGACGCGCAATCTGGTTAAACACTTCGAGGACGATAGAGAAGCCAAt                                           >  2:84649/1‑288 (MQ=255)
                                                                                                                                                                                                                                       aCCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATCAAACGCAGGATGGCATCGGCAGTACGCGCTCGCAGCGGCAAAGTCGACTGGTGGCGAATAAAGTTGCGACGCGCAATCTGGTTAAACACTTCGATGATGATCGAGAAGCCAATcg                                         <  1:1939082/289‑1 (MQ=255)
                                                                                                                                                                                                                                       aCCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATCAAACGCAGGATGGCATCGGCAGTACGCGCTCGCAGCGGCAAAGTCGACTGGTGGCGAATAAAGTTGCGACGCGCAATCTGGTTAAACACTTCGATGATGATCGAGAAGCCAATc                                          >  1:1036799/1‑288 (MQ=255)
                                                                                                                                                                                                                                         ccAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGATAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGTGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATCAAACGCAGGATGGCATCGGCAGTACGCGCTCGCAGCGGCAAAGTCGACTGGTGGCGAATAAAGTTGCGACGCGCAATCTGGTTAAACACTTCGATGATGATCGAGAAGCCAATcgcg                                       <  1:1645007/289‑1 (MQ=255)
                                                                                                                                                                                                                                             cTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATCAAACGCAGGATGGCATCGGCAGTACGCGCTCGCAGCGGCAAAGTCGACTGGTGGCGAATAAAGTTGCGACGCGCAATCTGGTTAAACACTTCGATGATGATCGAGAAGCCAATCGCGGCAt                                   >  2:1338330/1‑289 (MQ=255)
                                                                                                                                                                                                                                              ttATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATCAAACGCAGGATGGCATCGGCAGTACGCGCTCGCAGCGGCAAAGTCGACTGGTGGCGAATAAAGTTGCGACGCGCAATCTGGTTAAACACTTCGATGATGATCGAGAAGCCAATCGCGGCa                                    <  1:730270/287‑1 (MQ=255)
                                                                                                                                                                                                                                                  ttCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATCAAACGCAGGATGGCATCGGCAGTACGCGCTCGCAGCGGCAAAGTCGACTGGTGGCGAATAAAGTTGCGACGCGCAATCTGGTTAAACACTTCGATGATGATCGAGAAGCCAATCGCGGCATACAgg                              >  1:213422/1‑289 (MQ=255)
                                                                                                                                                                                                                                                    cACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATCAAACGCAGGATGGCATCGGCAGTACGCGCTCGCAGCGGCAAAGTCGACTGGTGGCGAATAAAGTTGCGACGCGCAATCTGGTTAAACACTTCGATGATGATCGAGAAGCCAATCGCGGCATACAGGTa                            <  1:1317181/289‑1 (MQ=255)
                                                                                                                                                                                                                                                     cacgcgcgGGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATCAAACGCAGGATGGCATCGGCAGTACGCGCTCGCAGCGGCAAAGTCGACTGGTGGCGAATAAAGTTGCGACGCGCAATCTGGTTAAACACTTCGATGATGATCGAGAAGCCAATCGCGGCATACAGGTa                            <  2:1365752/287‑1 (MQ=255)
                                                                                                                                                                                                                                                       cgcgc‑gGCGTCATGATCCCGCGCAGCGAACGCGACGCCAGCGTCAGTACGCCGATAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATCAAACGAAGGATGGCATCGGCAGTACGCGCTCGCAGCGGCAGAGTCGACTGGTGGCGAATAAAGTTGCGACGCGAAATCTGGTTAAACACTTCGATGATGAGCGAGAAGACAATCGCGGCATACAGGTaa                           >  1:1692353/1‑287 (MQ=255)
                                                                                                                                                                                                                                                       cgcgc‑gGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATCAAACGCAGGATGGCATCGGCAGTACGCGCTCGCAGCGGCAAAGTCGACTGGTGGCGAATAAAGTTGCGACGCGCAATCTGGTTAAACACTTCgatgatgatcgag                                                   <  1:93182/263‑5 (MQ=255)
                                                                                                                                                                                                                                                       cgcgc‑gGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATCAAACGCAGGATGGCATCGGCAGTACGCGCTCGCAGCGGCAAAGTCGACTGGTGGCGAATAAAGTTGCGACGCGCAATCTGGTTAAACACTTCgatgatgatcgag                                                   >  2:93182/1‑259 (MQ=255)
                                                                                                                                                                                                                                                       cgcgc‑gGCGTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATCAAACGCAGGATGGCATCGGCAGTACGCGCTCGCAGCGGCAAAGTCGACTGGTGGCGAATAAAGTTGCGACGCGCAATCTGGTTAAACACTTCGATGATGATCGAGAAGCCAATCGCGGCATACAGGTaa                           >  1:295685/1‑287 (MQ=255)
                                                                                                                                                                                                                                                          gc‑ggcgTCATGATCCCGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATCAAACGCAGGATGGCATCGGCAGTACGCGCTCGCAGCGGCAAAGTCGACTGGTGGCGAATAAAGTTGCGACGCGCAACTTGGTTAAAAACTTCGATGATGATCGAGAAGCCAATCCCCGCCAACAggccgtctat                      >  2:1203002/1‑281 (MQ=255)
                                                                                                                                                                                                                                                                       taccGGGCGGACAACGGGACGCCAGCGTCAGTCAGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAAGGCACCTGCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATCAAACGCAGGATGGCATCGGCAGTACGCGCTCGCAGCGGCAAAGTCGACTGGTGGCGAATAAAGTTGCGACGCGCAATCTGGTTAAACACTTCGATGATGATCGAGAAGCCAATCGCGGCATACAGGTAACCTTTCGGAATGTGga           <  2:1607155/286‑1 (MQ=255)
                                                                                                                                                                                                                                                                         ccGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCCTCGGGTTATCGGCAGCGTGATGAACATTGGCCCGACGTTTCCCGCCCATCAAACGCAGGATGGCATCGGCAGTACGCGCTCGCAGCGGCAAAGTCGACTGGTGGCGAATAAAGTTTCGACGCGCAATCTGGTTAAACACTTCGATGATGACCGAGAAGCCAATCGCGGCCTACAGGTAACCTTTCGGCATGTGgaca         >  2:1123566/1‑286 (MQ=255)
                                                                                                                                                                                                                                                                         ccGCGCAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATCAAACGCAGGATGGCATCGGCAGTACGCGCTCGCAGCGGCAAAGTCGACAGGTGGCGAATAAAGTTGCGACGCGCAATCTGGTTAAACACTTCGATGATGATCGAGAAGCCAATCGCGGCATACAGGTAACCTTTCGGAATGTGgaaa         >  1:1791287/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                           gcgcAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATCAAACGCAgg                                                                                                                                                   <  1:542810/148‑1 (MQ=255)
                                                                                                                                                                                                                                                                            cgcAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATCAAACGCAGGATGGCATCGGCAGTACGCGCTCGCAGCGGCAAAGTCGACTGGTGGCGAATAAAGTTGCGACGCGCAATCTGGTTAAACACTTCGATGATGATCGAGAAGCCAATCGCGGCATACAGGTAACCTTTCGGAATGTGgaaaccga     >  2:430314/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                              cAGAGAACGCGACGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATCAAACGCAGGATGGCATCGGCAGTACGCGCTCGCAGCGGCAAAGTCGACTGGTGGCGAATAAAGTTGCGACGCGCAATCTGGTTAAACACTTCGATGATGATCGAGAAGCCAATCGCGGCATACAGGTAACCTTTCGGAATGTGgaaaccgaa    >  1:1482754/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                                       |||                                                                                                                                                                                                                                                                                       
GACGCAGCACGCCCAACAGG‑TTGATCGGATCGAGGGTTTCCGGGACGATAATCGCCGGAGACGCGCTAGCAATCGCCGCCACATCAACGCCCTCTTCCAGCGCCACCAGCAGTTCTTTAGCACGTACAATACCGATGATTTCATCCAGTTCACCGCGACATACCGGGAACAGACTGTGCGGACTAGAGAGCAGTTGCTCGCGGATTTCATCGACCCCGAGATTAGCGTCAACCCAGCTTATTTCACCGCGC‑GGCGTCATGATCCCGCGCAGAGAACGGCTCGCCAGCGTCAGTACGCCGTTAATCATGTAACG‑TTCTTCTTCGGCAAATGCACCTTCCGGGATCGGCATCGGCATCGGGTTATCGGCATCGTGCTGAACATTGGCCTGACGTTTCCCGCCCATCAAACGCAGGATGGCATCGGCAGTACGCGCTCGCAGCGGCAAAGTGCTCTGGTGGCGAATAAAGTTGCGACGCGCAATCTGGTTAAACACTTCGATGATGATGCTGAAGCCAATCGCGGCATACAGGTAACCTTTCGGAATGTGGAAACCGAAAC  >  CP042583/1581081‑1581638

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A