Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F210 I1 R1 4929 268.4 3907572 96.3% 3762991 273.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,620,457 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,620,4570GC99.6% 530.3 / NA 229intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (1/0);  new base C (131/96);  total (132/97)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01
*CP0425831,620,4580CG99.1% 526.2 / NA 229intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (1/1);  new base G (131/94);  total (132/97)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,620,4590TA99.1% 532.5 / NA 229intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base A (129/97);  minor base C (2/0);  total (132/97)
Fisher's exact test for biased strand distribution p-value = 5.09e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 229 total aligned reads displayed.

CGCGCACGGCACACTTTCATCAAACGACCAATCGCGGGCAACGTCGCTTTATAGGTGGCAAAGAAATCCACAAATTCG‑CTGTGCTCTGGGCCATGATCCTGATCGGGTAAATAATATCCCCAGTACCCCTGACGTACGCTCTGGATGAATGGTTTAATAC‑CGTCATTTCTCGCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGGCTGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTGCCAGTCAACGCGCGGCTGAATTTTCTCCGGCCCGCGTATTGCCAACTCAGCCATCATTGCCATCGCTTGCGGCGCGGTGGCAAACATCTCATCAACAATCGCTTCGCGTTCAGCTTCACTACGTTCTGGAAAGCAGAGGCTCAGATTGATTAACGCACGACGGCGACTGCTTTTT  >  CP042583/1620185‑1620736
                                                                                                                                                                                                                                                                                   |||                                                                                                                                                                                                                                                                                     
 gcgcACGGCACACTTTCATCAAACGACCAATCGCGGGCAACGTCGCTTTATAGGTGGCAAAGAAATCCACAAATTCG‑CTGTGCTCTGGGCCATGATCCTGATCGGGTAAATAATATCCCCAGTACCCCTGACGTACCGACTGGATGAATGGTTTAATAC‑CGTCATTTCTCGCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGc                                                                                                                                                                                                                                                                        <  1:181813/289‑1 (MQ=255)
 gcgaccGGCACCCTTTCATCAAACGACCAATCGCGGGCAACGTCGCTTTATAGGTGGAAAAGAAATCCACAAATTCG‑CTGTGCTCTGGGCCATGATCCTGATCGGGTAAATAATATCCCCAGTACCCCTGACGTACCGACTGGATGAATGGTTTAATAC‑CGTCATTTCTCGCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGc                                                                                                                                                                                                                                                                        <  2:17565/284‑1 (MQ=255)
          acacTTTCATCAACCGACCAATCGCGGGCAACGTCGCTTTATAGGTGGCAAAGAAATCCACAAATTCG‑CTGTGCTCTGGGCCATGATCCTGATCGGGTAAATAATATCCCCAGTACCCCTGACGTACCGACTGGATGAATGGTTTAATAC‑CGTCATTTCTCGCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATc                                                                                                                                                                                                                                                               <  1:629515/289‑1 (MQ=255)
            acTTTCATCAAACGACCAATCGCGGGCAACGTCGCTTTATAGGTGGCAAAGAAATCCACAAATTCG‑CTGTGCTCTGGGCCATGATCCTGATCGGGTAAATAATATCCCCAGTACCCCTGACGTACCGACTGGATGAATGGTTTAATAC‑CGTCATTTCTCGCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGa                                                                                                                                                                                                                                                             <  1:131971/289‑1 (MQ=255)
                   tcaAACGACCAATCGCGGGCAACGTCGCTTTATAGGTGGCAAAGAAATCCACAAATTCG‑CTGTGCTCTGGGCCATGATCCTGATCGGGTAAATAATATCCCCAGTACCCCTGACGTACCGACTGGATGAATGGTTTAATAC‑CGTCATTTCTCGCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCa                                                                                                                                                                                                                                                      >  1:1619931/1‑289 (MQ=255)
                      aaCGACCAATCGCGGGCAACGTCGCTTTATAGGTGGCAAAGAAATCCACAAATTCG‑CTGTGCTCTGGGCCATGATCCTGATCGGGTAAATAATATCCCCAGTACCCCTGACGTACCGACTGGATGAATGGTTTAATAC‑CGTCATTTCTCGCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAAcc                                                                                                                                                                                                                                                   >  1:420105/1‑289 (MQ=255)
                        cGACCAATCGCGGGCAACGTCGCTTTATAGGTGGCAAAGAAATCCACAAATTCG‑CTGTGCTCTGGGCCATGATCCTGATCGGGTAAATAATATCCCCAGTACCCCTGACGTACCGACTGGATGAATGGTTTAATAC‑CGTCATTTCTCGCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGt                                                                                                                                                                                                                                                 >  1:247111/1‑289 (MQ=255)
                        cGACCAATCGCGGGCAACGTCGCTTTATAGGTGGCAAAGAAATCCACAAATTCG‑CTGTGCTCTGGGCCATGATCCTGATCGGGTAAATAATATCCCCAGTACCCCTGACGTACCGACTGGATGAATGGTTTAATAC‑CGTCATTTCTCGCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGt                                                                                                                                                                                                                                                 >  2:1520147/1‑289 (MQ=255)
                          aCCAATCGCGGGCAACGTCGCTTTATAGGTGGCAAAGAAATCCACAAATTCG‑CTGTGCTCTGGGCCATGATCCTGATCGGGTAAATAATATCCCCAGTACCCCTGACGTACCGACTGGATGAATGGTTTAATAC‑CGTCATTTCTCGCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGc                                                                                                                                                                                                                                               >  1:464410/1‑289 (MQ=255)
                                cgcgGGCAACGTCGCTTTATAGGTGGCAAAGAAATCCACAAATTCG‑CTGTGCTCTGGGCCATGATCCTGATCGGGTAAATAATATCCCCAGTACCCCTGACGTACCGACTGGATGAATGGTTTAATAC‑CGTCATTTCTCGCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCAcc                                                                                                                                                                                                                                         <  1:1887749/289‑1 (MQ=255)
                                   gggCAACGTCGCTTTATAGGTGGCAAAGAAATCCACAAATTCG‑CTGTGCTCTGGGCCATGATCCTGATCGGGTAAATAATATCCCCAGTACCCCTGACGTACCGACTGGATGAATGGTTTAATAC‑CGTCATTTCTCGCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGa                                                                                                                                                                                                                                      >  1:983911/1‑289 (MQ=255)
                                    ggCAACGTCGCTTTATAGGTGGCAAAGAAATCCACAAATTCG‑CTGTGCTCTGGGCCATGATCCTGATCGGGTAAATAATATCCCCAGTACCCCTGACGTACCGACTGGATGAATGGTTTAATAC‑CGTCATTTCTCGCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAAAATCGCTCCCATTTACTCCCCTTGCCAGGCCAACAGCCTGTCAGGAATATCGACGGACAAACCgatcgggccaataa                                                                                                                                                                                                                                     >  2:1049171/1‑276 (MQ=255)
                                         cGTCGCTTTATAGGTGGCAAAGAAATCCACAAATTCG‑CTGTGCTCTGGGCCATGATCCTGATCGGGTAAATAATATCCCCAGTACCCCTGACGTACCGACTGGATGAATGGTTTAATAC‑CGTCATTTCTCGCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATa                                                                                                                                                                                                                                >  1:730947/1‑289 (MQ=255)
                                               tgtatgGGTGGCAAAGACATCCACGAATTCGACTG‑GCTCTGGTACATGATCCTGTGTGGGTAAATAATATCCCCCGTACCCCTGACGTACCGACTGGATGAATGGTTTAATAC‑CGTCATTTCGCGCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATCATCAAAAACCGGGTTGCCCTGATTATGGAAAATCGCTGGCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACttt                                                                                                                                                                                                                           <  2:1489268/286‑1 (MQ=255)
                                                         gCAAAGAAATCCACAAATTCG‑CTGTGCTCTGGGCCATGATCCTGATCGGGTAAATAATATCCCCAGTACCCCTGACGTACCGACTGGATGAATGGTTTAATAC‑CGTCATTTCTCGCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGCGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCCttatta                                                                                                                                                                                                                 >  2:74957/1‑288 (MQ=255)
                                                           aaaGAAATCCACAAATTCG‑CTGTGCTCTGGGCCATGATCCTGATCGGGTAAATAATATCCCCAGTACCCCTGACGTACCGACTGGATGAATGGTTTAATAC‑CGTCATTTCTCGCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTAcg                                                                                                                                                                                                               >  1:1251522/1‑288 (MQ=255)
                                                           aaaGAAATCCACAAATTCG‑CTGTGCTCTGGGCCATGATCCTGATCGGGTAAATAATATCCCCAGTACCCCTGACGTACCGACTGGATGAATGGTTTAATAC‑CGTCATTTCTCGCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACGTTCTCGTTATTAcg                                                                                                                                                                                                               >  1:1924804/1‑288 (MQ=255)
                                                             aGAAATCCACAAATTCG‑CTGTGCTCTGGGCCATGATCCTGATCGGGTAAATAATATCCCCAGTACCCCTGACGTACCGACTGGATGAATGGTTTAATAC‑CGTCATTTCTCGCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTAcgccg                                                                                                                                                                                                            <  1:636680/289‑1 (MQ=255)
                                                             aGAAATCCACAAATTCG‑CTGTGCTCTGGGCCATGATCCTGATCGGGTAAATAATATCCCCAGTACCCCTGACGTACCGACTGGATGAATGGTTTAATAC‑CGTCATTTCTCGCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTAcgcc                                                                                                                                                                                                             >  1:1031726/1‑288 (MQ=255)
                                                                aatcacaaaaTTCG‑CTGTGCTCTGGGCCATGATCCTGATCGGGTAAATAATATCCCCAGTACCCCTGACGTACCGACTGGATGAATGGTTTAATAC‑CGTCATTTCTCGCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCAt                                                                                                                                                                                                         <  2:1503233/282‑1 (MQ=255)
                                                                aaTCCACAAATTCG‑CTGTGCTCTGGGCCATGATCCTGATCGGGTAAATAATATCCCCAGTCCCCCTGACGTACCGACTGGATGAATGGTTTAATCC‑CGTCATTTCTCGCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACGTTCTCGTTATTACGCCGCAt                                                                                                                                                                                                         <  1:523777/289‑1 (MQ=255)
                                                                aaTCCACAAATTCG‑CTGTGCTCTGGGCCATGATCCTGATCGGGTAAATAATATCCCCAGTACCCCTGACGTACCGACTGGATGAATGGTTTAATAC‑CGTCATTTCTCGCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCAt                                                                                                                                                                                                         <  1:161703/289‑1 (MQ=255)
                                                                        aaTTCG‑CTGTGCTCTGGGCCATGATCCTGATCGGGTAAATAATATCCCCAGTACCCCTGACGTACCGACTGGATGAATGGTTTAATAC‑CGTCATTTCTCGCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCTATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCga                                                                                                                                                                                                 <  1:1601005/289‑1 (MQ=255)
                                                                          ttCG‑CTGTGCTCTGGGCCATGATCCTGATCGGATAAATAATATCCCCAGTACCCCTGACGTACCGACTGGATAAATGGTTTAATAC‑CGTCATTTCTCGCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCgatg                                                                                                                                                                                               <  1:1079697/289‑1 (MQ=255)
                                                                                      ctGGGCCATGATCCTGATCGGGTAAATAATATCCCCAGTACCCCTGACGTACCGACTGGATGAATGGTTTAATAC‑CGTCATTTCTCGCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTTCCCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGcc                                                                                                                                                                                     <  1:568248/289‑1 (MQ=255)
                                                                                            cATGATCCTGATCGGGTAAATAATATCCCCAGTACCCCTGACGTACCGACTGGATGAATGGTTTAATAC‑CGTCATTTCTCGCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTGCCa                                                                                                                                                                              >  1:1426180/1‑289 (MQ=255)
                                                                                              tGATCCTGATCGGGTAAATAATATCCCCAGTACCCCTGACGTACCGACTGGATGAATGGTTTAATAC‑CGTCATTTCTCGCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGCTAACTTTCCCGTTATTACGCCGCACCTCTTCGACTATCTCCAGCCCTTGCCAg                                                                                                                                                                             >  2:1006247/1‑288 (MQ=255)
                                                                                                   cTGATCGGGTAAATAATATCCCCAGTACCCCTGACGTACCGACTGGATGAATGGTTTAATAC‑CGTCATTTCTCGCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTGCCAGTCAAc                                                                                                                                                                        >  1:335949/1‑288 (MQ=255)
                                                                                                      aTCGGGTAAATAATATCCCCAGTACCCCTGACGTACCGACTGGATGAATGGTTTAATAC‑CGTCATTTCTCGCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCAATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTGCCAGTCAAcgcgc                                                                                                                                                                    >  1:912518/1‑289 (MQ=255)
                                                                                                        cGGGTAAATAATATCCCCAGTACCCCTGACGTACCGACTGGATGAATGGTTTAATAC‑CGTCATTTCTCGCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTGCCAGTCAAcgcgcg                                                                                                                                                                   >  1:603818/1‑288 (MQ=255)
                                                                                                           gTAAATAATATCCCCAGTACCCCTGACGTACCGACTGGATGAATGGTTTAATAT‑CGTCATTTCTCGCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGACCTTGCCAGTCAACGCGCGGCTg                                                                                                                                                               >  1:830978/1‑289 (MQ=255)
                                                                                                           gTAAATAATATCCCCAGTACCCCTGACGTACCGACTGGATGAATGGTTTAATAC‑CGTCATTTCTCGCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATACCTCTCTCGTTATTACGCCGCATCTCTGCGATTCACCTCAGCCCTTGCCCGTCAACCCGCgggcg                                                                                                                                                               >  2:47583/1‑286 (MQ=255)
                                                                                                           gTAAATAATATCCCCAGTACCCCTGACGTACCGACTGGATGAATGGTTTAATAC‑CGTCATTTCTCGCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTGCCAGTCAACGCGCGGCtc                                                                                                                                                               >  2:1270674/1‑288 (MQ=255)
                                                                                                           gTAAATAATATCCCCAGTACCCCTGACGTACCGACTGGATGAATGGTTTAATAC‑CGTCATTTCTCGCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTGCCAGTCAACGCGCGGCTg                                                                                                                                                               >  1:1471126/1‑289 (MQ=255)
                                                                                                                    atCCCCAGTACCCCTGACGTACCGACTGGATGAATGGTTTAATAC‑CGTCATTTCTCGCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTGCCAGTCAACGCGCGGCTGAATTTtct                                                                                                                                                       >  2:695970/1‑288 (MQ=255)
                                                                                                                     tCCCCAGTACCCCTGACGTACCGACTGGATGAATGGTTTAATAC‑CGTCATTTCTCGCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGCAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGAGCTCCAGCCCTTGCCAGTCAACGCGCGGCTGAATTTtctc                                                                                                                                                      >  2:1687534/1‑288 (MQ=255)
                                                                                                                     tCCCCAGTACCCCTGACGTACCGACTGGATGAATGGTTTAATAC‑CGTCATTTCTCGCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTCCGCCGCATCTCTTCGATGATCTCCAGCCCCTGCCAGTCAACCCCCGGCTGAATTTtcac                                                                                                                                                      >  2:1944038/1‑286 (MQ=255)
                                                                                                                     tCCCCAGTACCCCTGACGTACCGACTGGATGAATGGTTTAATAC‑CGTCATTTCTCGCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTGCCAGTCAACGCGCGGCTGAATTTtctc                                                                                                                                                      >  2:459519/1‑288 (MQ=255)
                                                                                                                     tCCCCAGTACCCCTGACGTACCGACTGGATGAATGGTTTAATAC‑CGTCATTTCTCGCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTGCCAGTCAACGCGCGGCTGAATTTTCTcc                                                                                                                                                     >  1:1168699/1‑289 (MQ=255)
                                                                                                                         cAGTACCCCTGACGTACCGACTGGATGAATGGTTTAATAC‑CGTCATTTCTCGCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTGCCAGTCAACGCGCGGCTGAATTTTCTCCGGcc                                                                                                                                                 <  1:1534140/289‑1 (MQ=255)
                                                                                                                           gTACCCCTGACGTACCGACTGGATGAATGGTTTAATAC‑CGTCATTTCTCGCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCTCATCTCTTCGATGATCTCCAGCCCTTGCCAGTCAACGCGCGCCTGAATTTTCTCCGGccc                                                                                                                                                >  1:1770656/1‑288 (MQ=255)
                                                                                                                             aCCCCTGACGTACCGACTGGATGAATGGTTTAATAC‑CGTCATTTCTCGCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTGCCAGTCAACGCGCGGCTGAATTTTCTCCGGccc                                                                                                                                                <  1:47583/286‑1 (MQ=255)
                                                                                                                                 cTGACGTACCGACTGGATGAATGGTTTAATAC‑CGTCATTTCTCGCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTGCCAGTCAACGCGCGGCTGAATTTTCTCCGGCCcgc                                                                                                                                              >  2:330538/1‑284 (MQ=255)
                                                                                                                                 cTGACGTACCGACTGGATGAATGGTTTAATAC‑CGTCATTTCTCGCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGACTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCTGCATGGCAGGAATATCGACGGCCCAACCGTTCGTCACCAGAAAGATAACTTTCTTGTTGTTACGCCGCTTCTCTCCGATGCGCCCCAGCCCTTGCCAGTCAACGCCCGTGTGAATTTTCTCCGGCCcgcgcttt                                                                                                                                         >  2:968682/1‑285 (MQ=255)
                                                                                                                                     agtaacatctGGATAAATGTTTTATAACGCGAAATTT‑TCACATGCAGAGCACGGCAGACGCGACGACGCACCGGGTT‑CCATACATATACACGAACCGGTTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCACTTGCAAGGCCATGAGCATGGAAGGAATATCGAAGGCCCAACCGTGCGGCACCAGAAAGATAACGTTATCGTTATTACGCCGCATATCCTCGATGATCTCCAGACCTTGCCAGTCAACGCGCGGCTGAATTTTCTCCGGCCCGCGTATTGCCa                                                                                                                                     <  2:1597075/282‑1 (MQ=255)
                                                                                                                                        accgacttgATGAATGGTTAAATAC‑CGTCTTTTCTCCCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATTGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTGCCAGTCAACGCGCGGCTGAATTTTCTCCGGCCCGCGTATTGCCAACt                                                                                                                                  <  2:495917/281‑1 (MQ=255)
                                                                                                                                        accgactGGATGAATGGTTTAATAC‑CGTCATTTCTCGCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTGCCAGTCAACGCGCGGCTGAATTTTCTCCGGCCCGCGTATTGCCAAc                                                                                                                                   >  1:185786/6‑288 (MQ=255)
                                                                                                                                        accgactGGATGAATGGTTTAATAC‑CGTCATTTCTCGCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTGCCAGTCAACGCGCGGCTGAATTTTCTCCGGCCCGCGTATTGCCAAc                                                                                                                                   >  1:1950792/6‑288 (MQ=255)
                                                                                                                                         ccgactGGATGAATGGTTTACTAC‑CGTCATTTCTCGCATGCAGACGACCGCCAAAGCGACGACGCACCCTCTT‑CCAGACATAACCAAACACCGGGTTCCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGACGCTATCTGCATCGACGGAATATCGACGGCCCAACCGTCCGGCACCAGCACTCTAATGTTCTCGCTACTCCGCCGCCACTCTTCGATAATACCCACCCCTTGCCAGTCACCGCCCGTCCGACTCTCCTCCGACGCGCGTTTTTCCCACt                                                                                                                                  >  2:23047/5‑288 (MQ=255)
                                                                                                                                         ccgactGGATGAATGGTTTAATAC‑CGTCATTTCTCGCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTGCCAGTCAACGCGCGGCTGAATTTTCTCCGGCCCGCGTATTGCCAACt                                                                                                                                  >  1:945950/5‑288 (MQ=255)
                                                                                                                                                       ggTTTAATAC‑CGTCATTTCTCGCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCCCCAGCCCTTGCCAGTCAACGCGCGGCTGAATTTTCTCCGGCCCGCGCATTGCCAACTCAGCCATCATTGCCa                                                                                                                   >  1:1682239/1‑289 (MQ=255)
                                                                                                                                                          ttAATAC‑CGTCATTTCTCGCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTTCCAGTCAACGCGCGGCTGAATTTTCTCCGGCCCCCGTATTTCCAACCTCGCCATCATTGCCATc                                                                                                                 >  2:1626405/1‑288 (MQ=255)
                                                                                                                                                          ttAATAC‑CGTCATTTCTCGCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTGCCAGTCAACGCGCGGCTGAATTTTCTCCGTCACGCGTATTGCCAACTCAGCCATCATTGCCATc                                                                                                                 >  1:1517085/1‑288 (MQ=255)
                                                                                                                                                                c‑cGTCATTTCTCGCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTGCCAGTCAACGCGCGGCTGAATTTTCTCCGGCCCGCGTATTGCCAACTCAGCCATCATTGCCATCGCTTgcg                                                                                                          <  1:736474/289‑1 (MQ=255)
                                                                                                                                                                   gTCATTTCTCGCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTGCCAGTCAACGCGCGGCTGAATTTTCTCCGGCCCGCGTATTGCCAACTCAGCCATCATTGCCATCGCTTgcggc                                                                                                        >  1:292754/1‑289 (MQ=255)
                                                                                                                                                                    tCATTTCTCGCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTg                                                                                                                                                                                                                                                <  2:719354/152‑1 (MQ=255)
                                                                                                                                                                    tCATTTCTCGCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTGCCAGTCAACGCGCGGCTGAATTTTCTCCGGCCCGCGTATTGCCAACTCAGCCACCATTGCCATCGCTTgcggc                                                                                                        >  2:1779510/1‑288 (MQ=255)
                                                                                                                                                                    tCATTTCTCGCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTGCCAGTCAACGCGCGGCTGAATTTTCTCCGGCCCGCGTATTGCCAACCCAGCCATCATGTCCATCCCCTccggc                                                                                                        >  2:1577428/1‑288 (MQ=255)
                                                                                                                                                                    tCATTTCTCGCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCAATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTGCCAGTCAACGCGCGGCTGAATTTTCTCCGGCCCGCGTATTGCCAACTCAGCCATCATTGCCATCGCTTgcggcg                                                                                                       <  2:912518/289‑1 (MQ=255)
                                                                                                                                                                    tCATTTCTCGAAGGCAGACGACCGCCAAAGCGAGGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTGCCAGTCAACGCGCGGCTGAATTTTCTCCGGCCCGCGTATTGCCAACTCAGCCATCATTGCCATCGCTTgcggcg                                                                                                       <  2:819468/289‑1 (MQ=255)
                                                                                                                                                                    gcATTTCCCGCATGACAACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTGCCAGTCAACGCGCGGCTGAATTTTCTCCGGCCCGCGTATTGCCAACTCAGCCATCATTGCCATCGCTTgcggcg                                                                                                       <  2:1910134/288‑1 (MQ=255)
                                                                                                                                                                     cATTGCTCGCATGCAGAACACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATTGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTGCCAGTCAACGCGCGGCTGAATTTTCTCCGGCCCGCGTATTGCCAACTCAGCCATCATTGCCATCGCTTgcggcg                                                                                                       <  2:830978/288‑1 (MQ=255)
                                                                                                                                                                      aTTTCTCGCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTGCCAGTCAACGCGCGGCTGAATTTTCTCCGGCCCGCGTATTGCCAACTCAGCCATCATTGCCATCGCTTGCGGcgcg                                                                                                     <  2:983911/289‑1 (MQ=255)
                                                                                                                                                                            cgcctgcgaacgacCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAACCCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTGCCAGTCAACGCGCGGCTGAATTTTCTCCGGCCCGCGTATTGCCAACTCAGCCATCATTGCCATCGCTTGCGGCGCGGTGGCa                                                                                               <  2:1364042/280‑1 (MQ=255)
                                                                                                                                                                            cGCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTGCCAGTCAACGCGCGGCTGAATTTTCTCCGGCCCGCGTATTGCCAACTCAGCCATCATTGCCATCGCTTGCGGCGCGGTGGCa                                                                                               >  1:1234307/1‑289 (MQ=255)
                                                                                                                                                                              cATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTGCCAGTCAACGCGCGGCTGAATTTTCTCCGGCCCGCGTATTGCCAACTCAGCCATCATTGCCATCGCTTGCGGCGCGGTGGCaaa                                                                                             <  2:1251522/289‑1 (MQ=255)
                                                                                                                                                                                 gCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTGCCAGTCAACGCGCGGCTGAATTTTCTCCGGCCCGCGTATTGCCAACTCAGCCATCATTGCCATCGCTTGCGGCGCGGTGGCAAACAt                                                                                          <  1:584809/289‑1 (MQ=255)
                                                                                                                                                                                     acgacCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTGCCAGTCAACGCGCGGCTGAATTTTCTCCGGCCCGCTTATTGCCAAATCAGCCATCATTTCCATCGCTTGCGGAGCGGTGGCAAACATCtca                                                                                      >  1:790803/1‑289 (MQ=255)
                                                                                                                                                                                      cgacCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTGCCAGTCAACGCGCGGCTGAATTTTCTCCGGCCCGCGTATTGCCAACTCAGCCATCATTGCCATCGCTTGCGGCGCGGTGGCAAACAtctc                                                                                       <  1:1006247/287‑1 (MQ=255)
                                                                                                                                                                                         ccGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTGCCAGTCAACGCGCGGCTGAATTTTCTCCGGCCCGCGTATTGCCAACTCAGCCATCATTTCCATCGCTTGCGGCCCGGTTGCAAACATCCCATcaa                                                                                  >  2:584809/1‑289 (MQ=255)
                                                                                                                                                                                         ccGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTGCCAGTCAACGCGCGGCTGAATTTTCTCCGGCCCGCGTATTGCCAACTCAGCCATCATTGCCATCGCTTGCGGCGCGGTGGCAAACATCtcatca                                                                                   >  1:74997/1‑288 (MQ=255)
                                                                                                                                                                                          cGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTGCCAGTCAACGCGCGGCTGAATTTTCTCCGGCCCGCGTATTGCCAACTCAGCCATCATTGCCATCGCTTGCGGCGCGGTGGCAAACATCCCATcaac                                                                                 >  1:18449/1‑289 (MQ=255)
                                                                                                                                                                                            ccAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTGCCAGTCAACGCGCGGCTGAATTTTCTCCGGCCCGCGTATTGCCAACTCAGCCATCATTGCCATCGCTTGCGGCGCGGTTGCaaa                                                                                             >  1:1669404/1‑275 (MQ=255)
                                                                                                                                                                                                   gacgacGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTGCCAGTCAACGCGCGGCTGAATTTTCTCCGGCCCGCGTATTGCCAACTCAGCCATCATTGCCATCGCTTGCGGCGCGGTGGCAAACATCTCATCAACAATCGCTTc                                                                        <  1:1456865/289‑1 (MQ=255)
                                                                                                                                                                                                      gacgCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTGCCAGTCAACGCGCGGCTGAATTTTCTCCGGCCCGCGTATTGCCAACTCAGCCATCATTGCCATCGCTTGCGGCGCGGTGGCAAACATCTCATCAACAATCGCTTcgcg                                                                     <  1:704330/289‑1 (MQ=255)
                                                                                                                                                                                                        tggtcctattt‑CCCGACATAACCATACACCTGCTTGCCCTGATGATGTAACATCGCTGCCATTGTCTGCCCTTGCGAGGCCTTCAGAATGGCAGGAATATCGAGGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTGGCCAGTCAACGCGCGGCTGAATTTTCTCCGGCCAGCGTATTGCCAACTCAGCCATCATTGCCATCGCTTGCGGCGCGGTGGCAAACATCTCATCAACAATCGCTTCGCGtt                                                                   <  2:638441/280‑1 (MQ=255)
                                                                                                                                                                                                              gtgtT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTGCCAGTCAACGCGCGGCTGAATTTTCTCCGGCCCGCGTATTGCCAACTCAGCCATCATTGCCATCGCTTGCGGCGCGGTGGCAAAc                                                                                            >  2:16187/1‑258 (MQ=255)
                                                                                                                                                                                                               tgtT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTGCCAGTCAACGCGCGGCTGAATTTTCTCCGGCCCGCGTATTGCCAACTCAGCCATCATTGCCATCGCTTGCGGCGCGGTGGCAAACATCTCATCAACAATCGCTTCGCGTTCAGCtt                                                             >  1:165265/1‑288 (MQ=255)
                                                                                                                                                                                                               tgtT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTGCCAGTCAACGCGCGGCTGAATTTTCTCCGGCCCGCGTATTGCCAACTCAGCCATCATTGCCATCGCTTGCGGCGCGGTGGCAAACATCTCATCAACAATCGCTTCGCGTTCAGCTTc                                                            >  1:1382034/1‑289 (MQ=255)
                                                                                                                                                                                                                  t‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTGCCAGTCAACGCGCGGCTGAATTTTCTCCGGCCCGCGTATTGCCAACTCAGCCATCATTGCCATCGCTTGCGGCGCGGTGGCAAACATCTCATCAACAATCGCTTCGCGTTCAGCTTCACt                                                         <  1:321561/289‑1 (MQ=255)
                                                                                                                                                                                                                  t‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTGCCAGTCAACGCGCGGCTGAATTTTCTCCGGCCCGCGTATTGCCAACTCAGCCATCATTGCCATCGCTTGCGGCGCGGTGGCAAACATCTCATCAACAATCGCTTCGCGTTCAGCTTCACt                                                         <  2:1458098/289‑1 (MQ=255)
                                                                                                                                                                                                                      aaccataggtaaaaaCCGGTGTGCACTGATGATGCAAACTCGTCGGCATTTTCAGCCGTTGAGAGGCCATCAGGATGGAAGGAATAACGACGGCCCAACCATGAGGCACCAGAAAGATACCTTTCTCGGTATTACGCCGCATCTCTTCGATGATCGCCAGCGCTTGCCAGTCAACGCGCGGCTGAATTTTCTCCGGCCCGCGTATTGCCAACTCAGCCATCATTGCCATCGCTTGCGGCGCGGTGGCAAACATCTCATCAACAATCGCTTCGCGTTCAGCTTCACTACg                                                      <  2:1196728/279‑1 (MQ=255)
                                                                                                                                                                                                                      aaaCATAATCAAAACCCGGGTTGACCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTGCCAGTCAACGCGCGGCTGAATTTTCTCCGGCCCGCGTATTGCCAACTCAGCCATCATTGCCATCGCTTGCGGCGCGGTGGCAAACATCTCATCAACAATCGCTTCGCGTTCAGCTTCACTACg                                                      <  1:1747743/287‑1 (MQ=255)
                                                                                                                                                                                                                         ccataTCACAAACCGGGTGTCCCGAATTATCGCACATCCCTGCCATTTTCGTCCCTTGCGACGCCATCAGCATGGCAGGAATATCGACGGCCAAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTGCCAGTCAACGCGCGGCTGAATTTTCTCCGGCCCGCGTATTGCCAACTCAGCCATCATTGCCATCGCTTGCGGCGCGGTGGCAAACATCTCATCAACAATCGCTTCGCGTTCAGCTTCACTACg                                                      <  2:1243113/282‑1 (MQ=255)
                                                                                                                                                                                                                          aTAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTGCCAGTCAACGCGCGGCTGAATTTTCTCCGGCCCGCGTATTGCCAACTCAGCCATCATTGCCATCGCTTGCGGCGCGGTGGCAAACCTCCCATCCACAATCGCTTCCCGTTCAGCTTCACTACGt                                                     >  2:808030/1‑286 (MQ=255)
                                                                                                                                                                                                                          aTAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTGCCAGTCAACGCGCGGCTGAATTTTCTCCGGCCCGCGTATTGCCAACTCAGCCATCATTGCCATCGCTTGCGGCGCGGTGGCAAACATCTCATCAACAATCGCTTCGCGTTCAGCTTCACTACGt                                                     >  1:1765852/1‑286 (MQ=255)
                                                                                                                                                                                                                            aaTCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCCGCCCTTGCCAGTCAACGCGCGGCTGAATTTTCTCCGGCCCGCGTATTACCAACCCAGCCAGCATTGCCATCGCTTGCGGCCCGGTGGCAACCATCTCATCAACAATCGCCTCCCGGTCAGCTTCACTGCGtcccgg                                                >  2:24640/1‑284 (MQ=255)
                                                                                                                                                                                                                            aaTCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTGCCAGTCAACGCGCGGCTGAATTTTCTCCGGCCCGCGTATTGCCAACTCAGCCATCATTGCCATCGCTTGCGGCGCGGTGGCAAAc                                                                                            <  2:427997/245‑1 (MQ=255)
                                                                                                                                                                                                                              tCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTGCCAGTCAACGCGCGGCTGAATTTTCTCCGGCCCGCGTATTGCCAACTCAGCCATCATTGCCATCGCTTGCGGCGCGGTGGCAAACATCTCATCAACAATCGCTTCGCGTTCAGCTTCACTACGTTCTGGaa                                              <  2:185786/289‑1 (MQ=255)
                                                                                                                                                                                                                               cAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTGCCAGTCAACGCGCGGCTGAATTTTCTCCGGCCCGCGTATTGCCAACTCAGCCATCATTGCCATCGCTTGCGGCGCGGTGGCAAACATCTCATCAACAATCGCTTCGCGtt                                                                   <  2:383247/267‑1 (MQ=255)
                                                                                                                                                                                                                                       gggTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCTGAATGGCAGCAATCTCGACGGCACAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTGCCAGTTAACGCGCCGCTGAATTTTCTCCGGCCAGCGTATTGCCAACTCAGCCATCATTGCCCTCGCTTGCGGTGCGGTGGCAAACATCTCATCTACAATCGCTTCGCGTTCAGCTTCACTACGTCCTGGAAAGCagagcg                                     <  1:543732/289‑3 (MQ=255)
                                                                                                                                                                                                                                        ggTTGCCCTGATTATGGAACATGGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCGCGTTATTACGCCGCATCTCTTCGATGATCCCCATCCCTTCACAGTCAACTCGCGGCTGAATTTTCTCCGGCCTGCGTATTGCCCACTCAGCCATCATTGACATAACTTGCAGCGCGGTGGCAAACAGCCCATCAACAACCGCTACGCGTTCAGCTTCATCACGTTCTGGAAAGCagtgcg                                     >  2:596816/1‑284 (MQ=255)
                                                                                                                                                                                                                                                  aTTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTGCCAGTCAACGCGCGGCTGAATTTTCTCCGGCCCGCGTATTGCCAACTCAGCCATCATTGCCATCGCTTGCGGCGCGGTGGCAAACATCTCATCAACAATCGCTTCGCGTTCAGCTTCACt                                                         <  2:790268/258‑1 (MQ=255)
                                                                                                                                                                                                                                                            aTCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTGCCAGTCAACGCGCGGCTGAATTTTCTCCGGCCCGCGTATTGCCAACTCAGCCATCATTGCCATCGCTTGCGGCGCGGTGGCAAACATCTCATCAACAATCGCTTCGCGTTCAGCTTCACTACGTTCTGGAAAGCATAGCGACAGATTGATTa                         >  2:1794955/1‑280 (MQ=255)
                                                                                                                                                                                                                                                            aTCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTGCCAGTCAACGCGCGGCTGAATTTTCTCCGGCCCGCGTATTGCCAACTCAGCCATCATTGCCATCGCTTGCGGCGCGGTGGCAAACATCTCATCAACAATCGCTTCGCGTTCAGCTTCACTACGTTCTGGAAAGCAGAGCGACAGATTGATTAACGCacgac                >  1:1545325/1‑289 (MQ=255)
                                                                                                                                                                                                                                                              cGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCAt                                                                                                                                                                                                         <  1:1697328/102‑1 (MQ=255)
                                                                                                                                                                                                                                                              cGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTGCCAGTCAACGCGCGGCTGAATTTTCTCCGGCCCGCGTATTGCCAACTCAGCCATCATTGCCATCGCTTTCGGCGCGGTGGCAAACATCTCATCAACACTCGCTTCGCGTTCCGCCTCACTCCGTTCTGGAAAGCAGAGCTCCCGTTTTATTAACGCtctacg               >  2:1694058/1‑288 (MQ=255)
                                                                                                                                                                                                                                                              cGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTGCCAGTCAACGCGCGGCTGAATTTTCTCCGGCCCGCGTATTGCCAACTCAGCCATCATTGCCATCGCTTGCGGCGCGGTGGCAAACATCTCATCAACAATCGCTTCGCGTTCAGCTTCACt                                                         <  2:1431707/246‑1 (MQ=255)
                                                                                                                                                                                                                                                                     aTTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTGCCAGTCAACGCGCGGCTGAATTTTCTCCGGCCCGCGTATTGCCAACTCAGCCATCATTGCCATCGCTTGCGGCGCGGTGGCAAACATCTCATCAACAATCGCTTCGCGTTCAGCTTCACTACGTTCTGGAAAGCAGAGCGACAGATTGATTAACGCACGACGGCgtgagc       <  1:1585194/289‑6 (MQ=255)
                                                                                                                                                                                                                                                                           tGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTGCCAGTCAACGCGCGGCTGAATTTTCTCCGGCCCGCGTATTGCCAACTCAGCCATCATTGCCATCGCCTCCGGCCCGGTGGCAAACCTCTTATCAACAATCGCTTCGCCTTCACCTTCCCTACGTTCTGGTAAGCATAGTGACAGATTGATTAACGCaagaccgacggcggctatt  >  2:31711/1‑274 (MQ=255)
                                                                                                                                                                                                                                                                                   |||                                                                                                                                                                                                                                                                                     
CGCGCACGGCACACTTTCATCAAACGACCAATCGCGGGCAACGTCGCTTTATAGGTGGCAAAGAAATCCACAAATTCG‑CTGTGCTCTGGGCCATGATCCTGATCGGGTAAATAATATCCCCAGTACCCCTGACGTACGCTCTGGATGAATGGTTTAATAC‑CGTCATTTCTCGCATGCAGACGACCGCCAAAGCGACGACGCACCGTGTT‑CCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGGCTGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCTCGTTATTACGCCGCATCTCTTCGATGATCTCCAGCCCTTGCCAGTCAACGCGCGGCTGAATTTTCTCCGGCCCGCGTATTGCCAACTCAGCCATCATTGCCATCGCTTGCGGCGCGGTGGCAAACATCTCATCAACAATCGCTTCGCGTTCAGCTTCACTACGTTCTGGAAAGCAGAGGCTCAGATTGATTAACGCACGACGGCGACTGCTTTTT  >  CP042583/1620185‑1620736

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A