Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F210 I1 R1 4929 268.4 3907572 96.3% 3762991 273.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,621,368 3 bp→TGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,621,3680AT98.7% 554.5 / NA 237intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base A (0/1);  major base T (129/103);  minor base G (0/3);  total (129/108)
Fisher's exact test for biased strand distribution p-value = 9.03e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,621,3690CG99.6% 558.8 / NA 237intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/0);  major base G (129/107);  minor base T (0/1);  total (129/108)
Fisher's exact test for biased strand distribution p-value = 4.56e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,621,3700TA99.2% 554.4 / NA 237intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base A (128/106);  minor base G (0/2);  total (129/108)
Fisher's exact test for biased strand distribution p-value = 2.08e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01

Only 100 of 238 total aligned reads displayed.

TCGCGACGATCGGAGCCGGTCAGCCCTTCGGTACGCGGCAGTTTTGCCGTCAGCGGGTTTACGGCCTGCTGGTTTATCCATACTTCATAGTGCAGATGCGGCCCGGTACTACGTCCGGTATTACCGGAAAGCGCGATACGGTCGCCACGTTTCACCTTCTGTCCCGGTTTCACCAGAATCTTGCGCAAGTGCATATAACGCGTGGTGTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACACTA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGAGCTGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAATCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCACTACGCAAACGTACGCCCAGCAGCTGGCTTTGCTCACGTTTACCATCAAGCATTTCTCGAG  >  CP042583/1621081‑1621645
                                                                                                                                                                                                                                                                                               |||                                                                                                                                                                                                                                                                                    
                  gTCAGCCCTTCGGTACGCGGCAGTTTTGCCGTCAGCGGGTTTACGGCCTGCTGGTTTATCCATACTTCATAGTGCAGATGCGGCCCGGTTGAACGTCCGGTATTACCGGAAAGCGCGATACGGTCGCCACGTTTCACCTTCTGTCCCGGTTTCACCAGAATCTTGCGCAAGTGCATATAACGCGTGGTGTAGCTGCGACCATGCCGAACAGCCACATAATAACCTCCCGCGCCACTGCGTTTGGCAACCACCAATTCACCGTCACCCACTGAA‑CGCACTGGCCTAccc                                                                                                                                                                                                                                                                     >  2:1459547/1‑288 (MQ=255)
                            cGGTACGCGGCAGTTTTGCCGTCAGCGGGTTTACGGCCTGCTGGTTTATCCATACTTCATAGTGCAGATGCGGCCCGGTTGAACGTCCGGTATTACCGGAAAGCGCGATACGGTCGCCACGTTTCACCTTCTGTCCCGGTTTCACCAGAATCTTGCGCAAGTGCATATAACGCGTGGTGTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGc                                                                                                                                                                                                                                                          <  1:104402/289‑1 (MQ=255)
                            cGGTACGCGGCAGTTTTGCCGTCAGCGGGTTTACGGCCTGCTGGTTTATCCATACTTCATAGTGCAGATGCGGCCCGGTTGAACGTCCGGTATTACCGGAAAGCGCGATACGGTCGCCACGTTTCACCTTCTGTCCCGGTTTCACCAGAATCTTGCGCAAGTGCATATAACGCGTGGTGTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGc                                                                                                                                                                                                                                                          >  1:670602/1‑289 (MQ=255)
                                aCGCGGCAGTTTTGCCGTCAGCGGGTTTACGGCCTGCTGGTTTATCCATACTTCATAGTGCAGATGCGGCCCGGTTGAACGTCCGGTATTACCGGAAAGCGCGATACGGTCGCCACGTTTCACCTTCTGTCCCGGTTTCACCAGAATCTTGCGCAAGTGCATATAACGCGTGGTGTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGaa                                                                                                                                                                                                                                                       <  2:1871731/288‑1 (MQ=255)
                                    ggCAGTTTTGCCGTCAGCGGGTTTACGGCCTGCTGGTTTATCCATACTTCATAGTGCAGATGCGGCCCGGTTGAACGTCCGGTATTACCGGAAAGCGCGATACGGTCGCCACGTTTCACCTTCTGTCCCGGTTTCACCAGAATCTTGCGCAAGTGCATATAACGCGTGGTGTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAACTCa                                                                                                                                                                                                                                                   >  2:851154/1‑288 (MQ=255)
                                    ggCAGTTTTGCCGTCAGCGGGTTTACGGCCTGCTGGTTTATCCATACTTCATAGTGCAGATGCGGCCCGGTTGAACGTCCGGTATTACCGGAAAGCGCGATACGGTCGCCACGTTTCACCTTCTGTCCCGGTTTCACCAGAATCTTGCGCAAGTGCATATAACGCGTGGTGTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCaa                                                                                                                                                                                                                                                  <  1:1002991/289‑1 (MQ=255)
                                    ggCAGTTTTGCCGTCAGCGGGTTTACGGCCTGCTGGTTTATCCATACTTCATAGTGCAGATGCGGCCCGGTTGAACGTCCGGTATTACCGGAAAGCGCGATACGGTCGCCACGTTTCACCTTCTGTCCCGGTTTCACCAGAATCTTGCGCAAGTGCATATAACGCGTGGTGTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCaa                                                                                                                                                                                                                                                  <  1:407456/289‑1 (MQ=255)
                                    ggCAGTTTTGCCGTCAGCGGGTTTACGGCCTGCTGGTTTATCCATACTTCATAGTGCAGATGCGGCCCGGTTGAACGTCCGGTATTACCGGAAAGCGCGATACGGTCGCCACGTTTCACCTTCTGTCCCGGTTTCACCAGAATCTTGCGCAAGTGCATATAACGCGTGGTGTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCaa                                                                                                                                                                                                                                                  <  1:38488/289‑1 (MQ=255)
                                    ggCAGTTTTGCCGTCAGCGGGTTTACGGCCTGCTGGTTTATCCATACTTCATAGTGCAGATGCGGCCCGGTTGAACGTCCGGTATTACCGGAAAGCGCGATACGGTCGCCACGTTTCACCTTCTGTCCCGGTTTCACCAGAATCTTGCGCAAGTGCATATAACGCGTGGTGTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCa                                                                                                                                                                                                                                                   >  1:1586944/1‑288 (MQ=255)
                                    ggCAGTTTTGCCGTCAGCGGGTTTACGGCCTGCTGGTTTATCCATACTTCATAGTGCAGATGCGGCCCGGTTGAACGTCCGGTATTACCGGAAAGCGCGATACGGTCGCCACGTTTCACCTTCTGTCCCGGTTTCACCAGAATCTTGCGCAAGTGCATATAACGCGTGGTGTAGCTGCGACCATGACGAATAGCCACATAATAAACCGCTGCGCCACTGCGTTTGGCAACCACCACTCCACCGCCCCCCACTGAA‑AGCACTGGCGTACCCTCCGGCATGGCGAAATCa                                                                                                                                                                                                                                                   >  2:360894/1‑288 (MQ=255)
                                     gCAGTTTTGCCGTCAGCGGGTTTACGGCCTGCTGGTTTATCCATACTTCATAGTGCAGATGCGGCCCGGTTGAACGTCCGGTATTACCGGAAAGCGCGATACGGTCGCCACGTTTCACCTTCTGTCCCGGTTTCACCAGAATCTTGCGCAAGTGCATATAACGCGTGGTGTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCaa                                                                                                                                                                                                                                                  <  1:1937524/288‑1 (MQ=255)
                                     gCAGTTTTGCCGTCAGCGGGTTTACGGCCTGCGGGTTTATCCATACTTCAATGTGCAGCTGCGGCCCGGTGGAACGTCCGGTATTACCGGAAAGCGCGATACGGTCGCAACGTTTCACCTTCTGTCCCGGTTTCACCAGAATCTTGCGCAAGTGCATATAACGCGTGGTGTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCaa                                                                                                                                                                                                                                                  <  2:143294/288‑1 (MQ=255)
                                                              ggCCTGCTGGTTTATCCATACTTCATAGTGCAGATGCGGCCCGGTTGAACGTCCGGTATTACCGGAAAGCGCGATACGGTCGCCACGTTTCACCTTCTGTCCCGGTTTCACCAGAATCTTGCGCAAGTGCATATAACGCGTGGTGTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCg                                                                                                                                                                                                                        <  1:703197/289‑1 (MQ=255)
                                                              ggCCTGCTGGTTTATCCATACTTCATAGTGCAGATGCGGCCCGGTTGAACGTCCGGTATTACCGGAAAGCGCGATACGGTCGCCACGTTTCACCTTCTGTCCCGGTTTCACCAGAATCTTGCGCAAGTGCATATAACGCGTGGTGTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCg                                                                                                                                                                                                                        <  1:1246755/289‑1 (MQ=255)
                                                              ggCCTGCTGGTTTATCCATACTTCATAGTGCAGATGCGGCCCGGTTGAACGTCCGGTATTACCGGAAAGCGCGATACGGTCGCCACGTTTCACCTTCTGTCCCGGTTTCACCAGAATCTTGCGCAAGTGCATATAACGCGTGGTGTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCg                                                                                                                                                                                                                        <  1:312114/289‑1 (MQ=255)
                                                                  tgctgGTTTATCCATACTTCATAGTGCAGATGCGGCCCGGTTGAACGTCCGGTATTACCGGAAAGCGCGATACGGTCGCCACGTTTCACCTTCTGTCCCGGTTTCACCAGAATCTTGCGCAAGTGCATATAACGCGTGGTGTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAAcg                                                                                                                                                                                                                              >  1:1308368/1‑279 (MQ=255)
                                                                  tgctgGTTTATCCATACTTCATAGTGCAGATGCGGCCCGGTTGAACGTCCGGTATTACCGGAAAGCGCGATACGGTCGCCACGTTTCACCTTCTGTCCCGGTTTCACCAGAATCTTGCGCAAGTGCATATAACGCGTGGTGTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCGTCCGCATGGCGAAATCAACACCCCCGTGTCGTGCCACCGCACCGGTc                                                                                                                                                                                                                     >  2:1699912/1‑288 (MQ=255)
                                                                  tgctgGTTTATCCATACTTCATAGTGCAGATGCGGCCCGGTTGAACGTCCGGTATTACCGGAAAGCGCGATACGGTCGCCACGTTTCACCTTCTGTCCCGGTTTCACCAGAATCTTGCGCAAGTGCATATAACGCGTGGTGTAGCTGCGACCATGACGAATAGCC‑CATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCAc                                                                                                                                                                                                                   <  2:248042/289‑1 (MQ=255)
                                                                  tgctgGTTTATCCATACTTCATAGTGCAGATGCGGCCCGGTTGAACGTCCGGTATTACCGGAAAGCGCGATACGGTCGCCACGTTTCAACTTCTGTCCCGGTTTCACCAGAATCTTGCGCAAGTGCATATAACGCGTGGTGTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCCGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGTGACCggcc                                                                                                                                                                                                                     >  1:1220514/1‑286 (MQ=255)
                                                                   tatgGTTTATCCATACTGCATAGTGCGGAGGCGGCCCGGTTGAACGTCCGGTATTACCGGAAAGCACGATACAGTCGCCACGTTTCACCTTCTGTCCCGGTTTCACCAGAATCTTGCGCAAGTGCATATAACGCGTGGTGTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCAc                                                                                                                                                                                                                   <  2:1074675/287‑1 (MQ=255)
                                                                   ggtgttttATCACTACTTCAAGGTGCAGGTGCAGCCCGGTTGCACTGCCGGGATTACCGGAGAGCGCGATACGGTGGCACCGTTTCACCTTCTGTCCCGGTTTCACCAGAATCTTGCGCAAGTGCATATAGCGCGTGGTGTAGCTGCGACCATGCCGAATAGCCACATAATACCCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCAc                                                                                                                                                                                                                   <  2:1220514/284‑1 (MQ=255)
                                                                        tttATCCATACTTCATAGTGCAGATGCGGCCCGGTTGAACGTCCGGTATTACCGGAAAGCGCGATACGGTCGCCACGTTTCACCTTCTGTCCCGGTTTCACCAGAATCTTGCGCAAGTGCATATAACGCGTGGTGTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGa                                                                                                                                                                                                               <  1:1295591/288‑1 (MQ=255)
                                                                           aTCCATACTTCATAGTGCAGATGCGGCCCGGTTGAACGTCCGGTATTACCGGAAAGCGCGATACGGTCGCCACGTTTCACCTTCTGTCCCGGTTTCACCAGAATCTTGCGCAAGTGCATATAACGCGTGGTGTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAg                                                                                                                                                                                                           <  1:1408348/289‑1 (MQ=255)
                                                                            tCCATACTTCATAGTGCAGATGCGGCCCGGTTGAACGTCCGGTATTACCGGAAAGCGCGATACGGTCGCCACGTTTCACCTTCTGTCCCGGTTTCACCAGAATCTTGCGCAAGTGCATATAACGCGTGGTGTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCg                                                                                                                                                                                                                        <  1:600179/275‑1 (MQ=255)
                                                                            tCCATACTTCATAGTGCAGATGCGGCCCGGTTGAACGTCCGGTATTACCGGAAAGCGCGATACGGTCGCCACGTTTCACCTTCTGTCCCGGTTTCACCAGAATCTTGCGCAAGTGCATATAACGCGTGGTGTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGt                                                                                                                                                                                                          >  1:1555057/1‑289 (MQ=255)
                                                                                 aCTTCATAGTGCAGATGCGGCCCGGTTGAACGTCCGGTATTACCGGAAAGCGCGATACGGTCGCCACGTTTCACCTTCTGTCCCGGTTTCACCAGAATCTTGCGCAAGTGCATATAACGCGTGGTGTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGCAATCAACACCTCTGTgtggtg                                                                                                                                                                                                                                   >  1:1858858/1‑259 (MQ=255)
                                                                                 aCTTCATAGTGCAGATGCGGCCCGGTTGAACGTCCGGTATTACCGGAAAGCGCGATACGGTCGCCACGTTTCACCTTCTGTCCCGGTTTCACCAGAATCTTGCGCAAGTGCATATAACGCGTGGTGTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTacgac                                                                                                                                                                                                     >  1:1338817/1‑289 (MQ=255)
                                                                                 aCTTCATAGTGCAGATGCGGCCCGGTTGAACGTCCGGTATTACCGGAAAGCGCGATACGGTCGCCACGTTTCACCTTCTGTCCCGGTTTCACCAGAATCTTGCGCAAGTGCATATAACGCGTGGTGTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCCCTGCGTGGTGCAACGCGACCGGTCACCGGGttgagtcga                                                                                                                                                                                                      >  2:44165/1‑281 (MQ=255)
                                                                                  cTTCATAGTGCAGATGCGGCCCGGTTGAACGTCCGGTATTACCGGAAAGCGCGATACGGTCGCCACGTTTCACCTTCTGTCCCGGTTTCACCAGAATCTTGCGCAAGTGCATATAACGCGTGGTGTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTacgacg                                                                                                                                                                                                    <  1:338956/289‑1 (MQ=255)
                                                                                     cATAGTGCAGATGCGGCCCGGTTGAACGTCCGGTATTACCGGAAAGCGCGATACGGTCGCCACGTTTCACCTTCTGTCCCGGTTTCACCAGAATCTTGCGCAAGTGCATATAACGCGTGGTGTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCgg                                                                                                                                                                                                 >  1:208621/1‑289 (MQ=255)
                                                                                      aTAGTGCAGATGCGGCCCGGTTGAACGTCCGGTATTACCGGAAAGCGCGATACGGTCGCCACGTTTCACCTTCTGTCCCGGTTTCACCAGAATCTTGCGCAAGTGCATATAACGCGTGGTGTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTTCAACGCGACCGGTCACCGGATTAGTACGACGCggg                                                                                                                                                                                                >  1:1243430/1‑289 (MQ=255)
                                                                                            cAGATGCGGCCCGGTTGAACGTCCGGTATTACCGGAAAGCGCGATACGGTCGCCACGTTTCACCTTCTGTCCCGGTTTCACCAGAATCTTGCGCAAGTGCATATAACGCGTGGTGTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCAc                                                                                                                                                                                                                   <  1:1370614/264‑1 (MQ=255)
                                                                                            cAGATGCGGCCCGGTTGAACGTCCGGTATTACCGGAAAGCGCGATACGGTCGCCACGTTTCACCTTCTGTCCCGGTTTCACCAGAATCTTGCGCAAGTGCATATAACGCGTGGTGTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTaaaa                                                                                                                                                                                          >  1:64455/1‑289 (MQ=255)
                                                                                               aTGCGGCCCGGTTGAACGTCCGGTATTACCGGAAAGCGCGATACGGTCGCCACGTTTCACCTTCTGTCCCGGTTTCACCAGAATCTTGCGCAAGTGCATATAACGCGTGGTGTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTa                                                                                                                                                                                       >  1:1134341/1‑289 (MQ=255)
                                                                                                   ggCCCGGTTGAACGTCCGGTATTACCGGAAAGCGCGATACGGTCGCCACGTTTCACCTTCTGTCCCGGTTTCACCAGAATCTTGCGCAAGTGCATATAACGCGTGGTGTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTagacg                                                                                                                                                                                   <  1:1077746/289‑3 (MQ=255)
                                                                                                    gCCCGGTTTAACGTCCGGTATTACCGGAAAGCGCGATACGGTCGCCACGTTTCACCTTCTGTCCCGGTTTCACCAGAATCTTGCGCAAGTGCATATAACGCGTGGTGTGGCTGCGACCATGACGAAGAGCCACATAATAACCTGCTGCGCCACTGCGTTTGTCAACCACCACTTCACAGTCACCCACTGAA‑CGCACTGGCGTATCCTGCGGCATGGCGGAATCAACACCTCTGTGTGTTGCAACGCCACCGGCCCCCGGATTAAGACGACGCGGGttcatatgactaga                                                                                                                                                                                  >  2:1005388/1‑277 (MQ=255)
                                                                                                    gCCCGGTTGAACGTCCGGTATTACCGGAAAGCGCGATACGGTCGCCACGTTTCACCTTCTGTCCCGGTTTCACCAGAATCTTGCGCAAGTGCATATAACGCGTGGTGTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTagacga                                                                                                                                                                                  >  2:1920652/1‑286 (MQ=255)
                                                                                                    gCCCGGTTGAACGTCCGGTATTACCGGAAAGCGCGATACGGTCGCCACGTTTCACCTTCTGTCCCGGTTTCACCAGAATCTTGCGCAAGTGCATATAACGCGTGGTGTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTagacga                                                                                                                                                                                  >  2:1837759/1‑286 (MQ=255)
                                                                                                    gCCCGGTTGAACGTCCGGTATTACCGGAAAGCGCGATACGGTCGCCACGTTTCACCTTCTGTCCCGGTTTCACCAGAATCTTGCGCAAGTGCATATAACGCGTGGTGTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTagacga                                                                                                                                                                                  >  2:654636/1‑286 (MQ=255)
                                                                                                    gCCCGGTTGAACGTCCGGTATTACCGGAAAGCGCGATACGGTCGCCACGTTTCACCTTCTGTCCCGGTTTCACCAGAATCTTGCGCAAGTGCATATAACGCGTGGTGTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTagacga                                                                                                                                                                                  >  1:504996/1‑286 (MQ=255)
                                                                                                    gCCCGGTTGAACGTCCGGTATTACCGGAAAGCGCGATACGGTCGCCACGTTTCACCTTCTGTCCCGGTTTCACCAGAATCTTGCGCAAGTGCATATAACGCGTGGTGTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTagacga                                                                                                                                                                                  >  1:119408/1‑286 (MQ=255)
                                                                                                    gCCCGGTTGAACGTCCGGTATTACCGGAAAGCGCGATACGGTCGCCACGTTTCACCTTCTGTCCCGGTTTCACCAGAATCTTGCGCAAGTGCATATAACGCGTGGTGTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTagacga                                                                                                                                                                                  >  1:1832013/1‑286 (MQ=255)
                                                                                                         gttgaacGTCCGGTATTACCGGAAAGCGCGATACGGTCGCCACGTTTCACCTTCTGTCCCGGTTTCACCAGAATCTTGCGCAAGTGCATATAACGCGTGGTGTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTagacgagata                                                                                                                                                                              >  2:384923/6‑281 (MQ=255)
                                                                                                                           ccGGAAAGCGCGATACGGTCGCCACGTTTCACCTTCTGTCCCGGTTTCACCAGAATCTTGCGCAAGTGCATATAACGCGTGGTGTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACct                                                                                                                                                                                                                                             <  2:140153/207‑1 (MQ=255)
                                                                                                                                aaGCGCGATACGGTCGCCACGTTTCACCTTCTGTCCCGGTTTCACCAGAATCTTGCGCAAGTGCATATAACGCGTGGTGTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGCA‑AGCACTGGCGTACCCTGCGGCCTGGCGAAATCAACCCCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGTCGAGATACGGAACTGTTTCGCCGTCtggta                                                                                                                                                       >  2:1257318/1‑286 (MQ=255)
                                                                                                                                aaGCGCGATACGGTCGCCACGTTTCACCTTCTGTCCCGGTTTCACCAGAATCTTGCGCAAGTGCATATAACGCGTGGTGTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCCCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGaa                                                                                                                                                       >  2:127131/1‑288 (MQ=255)
                                                                                                                                   cgcgATACGGTCGCCACGTTTCACCTTCTGTCCCGGTTTCACCAGAATCTTGCGCAAGTGCATATAACGCGTGGTGTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGACAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGa                                                                                                                                                                                                                           <  2:1245861/217‑1 (MQ=255)
                                                                                                                                     cgATACGGTCGCCACGTTTCACCTTCTGTCCCGGTTTCACCAGAATCTTGCGCAAGTGCATATAACGCGTGGTGTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCaa                                                                                                                                                 >  2:1208800/1‑289 (MQ=255)
                                                                                                                                           ggTCGCCACGTTTCACCTTCTGTCCCGGTTTCACCAGAATCTTGCGCAAGTGCATATAACGCGTGGTGTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAATcc                                                                                                                                           <  1:44165/289‑1 (MQ=255)
                                                                                                                                             tCGCCACGTTTCACCTTCTGTCCCGGTTTCACCAGAATCTTGCGCAAGTGCATATAACGCGTGGTGTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAATCCt                                                                                                                                          <  1:1459547/288‑1 (MQ=255)
                                                                                                                                                 cACGTTTCCCCTTCTGTCCCGGTTTCCCCAGAATCTTGAGCAAGTGCAAGTAACGCGTGGTGTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAATCCTTTCGc                                                                                                                                     <  2:206002/289‑1 (MQ=255)
                                                                                                                                                 cACGTTTCACCTTCTGTCCCGGTTTCACCAGAATCTTGCGCAAGTGCATATAACGCGTGGTGTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAATCCTTTCGc                                                                                                                                     <  2:1134341/289‑1 (MQ=255)
                                                                                                                                                      ttcagctgatgccccGGTTCCACCAGAATCTTGGGCAAGTGGATAGACCGCGTGGTGTGGCGGCGACCATGACAAATAGCCACATAATAACGTGCTGCGCCACGGCGTTTGGCAACGACCACTTCACCTTCACCCGCTGGA‑AGCACTGGCGTACCCGGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAAGTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAATCCTTTCGCCAGAc                                                                                                                                <  2:1566256/277‑1 (MQ=255)
                                                                                                                                                      ttCACCTTCTGTCCCGGTTTCACCAGAATCTTGCGCAAGTGCATATAACGCGTGGTGTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAATCCTTTCGCCAGAc                                                                                                                                <  1:1855865/289‑1 (MQ=255)
                                                                                                                                                         aCCTTCGGTCCCGGTTTCACCAGAATCTTGCGCAAGTGCATATAACGCGTGGTGTAGCTGCGACCATGACCAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAATCCTTTCGCCAGACCAg                                                                                                                             <  2:707888/289‑1 (MQ=255)
                                                                                                                                                              cTGTCCCGGTTTCACCAGAATCTTGCGCAAGTGCATATAACGCGTGGTGTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTGAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAATCCTTTCGCCAGACCAGTACCg                                                                                                                        >  1:166656/1‑289 (MQ=255)
                                                                                                                                                                     ggTTTCACCAGAATCTTGCGCAAGTGCATATAACGCGTGGTGTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAATCCTTTCGCCAGACCAGTACCGTTACGa                                                                                                                  >  2:450969/1‑288 (MQ=255)
                                                                                                                                                                      gTTTCACCAGAATCTTGCGCAAGTGCATATAACGCGTGGTGTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCCCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAAGCGCAAGAATCCTTTCGCCAGCCCAGTACCGTCACgtc                                                                                                                 >  2:1721318/1‑286 (MQ=255)
                                                                                                                                                                         tCACCAGAATCTTGCGCAAGTGCATATAACGCGTGGTGTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACCCCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGTGTTAAAATTAGACGAGATACGGAACTGGTTCGCCCTCGGGAACCGCAAGAATCCTTTCGTCCGTCCAGTACCGTTCCGATCGt                                                                                                              >  2:1548313/1‑288 (MQ=255)
                                                                                                                                                                                aaTCTTGCGCAAGTGCATATAACGCGTGGTGTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGAGTAGTACGACGCGGGTTAAAATTAGACGAGATGCGGAACTTTTGCGCAGTCGGGAATCTAAAGAACCCTTTCGCCCGCACAGTTCCGTTCGGATGGTAGAATTTg                                                                                                      >  2:1097391/1‑289 (MQ=255)
                                                                                                                                                                                       cgcAAGTGCATATAACGCGTGGTGTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAATCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGcaagct                                                                                                >  1:254790/1‑283 (MQ=255)
                                                                                                                                                                                           agggcaattaccgcgTGGTGGCGCGCCGACCATGACGAATAGCCACATCATACCCGCCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAATCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAgc                                                                                           <  2:1338817/278‑1 (MQ=255)
                                                                                                                                                                                                agattaCGCGTGGGGTAGCTGCGACCATGCCGAATAGCCACATACTAACCTGCTGCGCCACTGCGTTTGGCAACCAACACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAATCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGa                                                                                      <  2:319796/284‑1 (MQ=255)
                                                                                                                                                                                                 tataACGCGTGGTGTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAATCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGAt                                                                                     >  1:1069148/1‑289 (MQ=255)
                                                                                                                                                                                                  ataACGCGTGGTGTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAATCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATa                                                                                    <  1:794788/289‑1 (MQ=255)
                                                                                                                                                                                                       gcgTGGTGTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAATCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGta                                                                               >  2:1032630/1‑289 (MQ=255)
                                                                                                                                                                                                        cgTGGTGTAGCTGCGACCATGACGAATAGCCCAATAATAACCTGCTGCGCCCCTGCGTTTGGCAACCACCACTTCCCCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGGGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAATCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGtaa                                                                              <  1:281359/289‑1 (MQ=255)
                                                                                                                                                                                                         gtggtgTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAATCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGtaat                                                                             >  1:1891568/1‑289 (MQ=255)
                                                                                                                                                                                                          tggtgTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAATCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGtaata                                                                            >  2:600234/1‑289 (MQ=255)
                                                                                                                                                                                                                     cGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAATCCTTTCGCCAGACCAGAACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCt                                                                  >  1:91178/1‑288 (MQ=255)
                                                                                                                                                                                                                       aCCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGCACTGTTTCGCCGTCGGGCATCGCAAGAATCCTTTCGCCAGACCAGTACCGTTACGATCGTAGACTTTGCCATCTTCAGCCAGGCTAGCGTAATAATCTTTACCTTct                                                               >  2:1669490/1‑288 (MQ=255)
                                                                                                                                                                                                                       aCCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAATCCTTTCGCCAGACCATTACCGTTACGATCGTATAATTTGCCATCTTCAGCCCGGATAGCGGAAGAATCTTTCCCt                                                                  >  2:119650/1‑286 (MQ=255)
                                                                                                                                                                                                                       aCCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAATCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCt                                                                  >  1:675881/1‑286 (MQ=255)
                                                                                                                                                                                                                       aCCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAATCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCt                                                                  >  1:894219/1‑286 (MQ=255)
                                                                                                                                                                                                                       aCCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAATCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCt                                                                  >  1:1773748/1‑286 (MQ=255)
                                                                                                                                                                                                                       aCCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAATCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTc                                                                >  2:1822085/1‑288 (MQ=255)
                                                                                                                                                                                                                       aCCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAATCCTTTCGCACGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTcg                                                               >  1:1094518/1‑288 (MQ=255)
                                                                                                                                                                                                                                     ccACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAATCCTTTCGc                                                                                                                                     <  2:4649/205‑1 (MQ=255)
                                                                                                                                                                                                                                     ccACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAATCCTTTCGc                                                                                                                                     >  1:4649/1‑205 (MQ=255)
                                                                                                                                                                                                                                                ccTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAATCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCt                                                                                                <  1:146247/231‑1 (MQ=255)
                                                                                                                                                                                                                                                  tgctgcGCGACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCCCTGTGGGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATGAGACGAGATACGGAACTGTTTCGCTGTCGGGAATCGCAAGAATCCTTTCGACAGACCAGTACCGTTACGATCGTAGAATTTGCGATCTTAAGCGCGGCTAGCGTAATACTCATGACCTTCTGAACGCAAACGTACGCCAAGCAGCTgg                                    >  2:293481/1‑289 (MQ=255)
                                                                                                                                                                                                                                                   gctgcGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAATCCTTTCGCCAGACCAGTACCGTTACGATCGTAGCATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGCAAACGTACGCCCAGCAGCTg                                     >  1:846368/1‑287 (MQ=255)
                                                                                                                                                                                                                                                   gctgcGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAATCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGCAAACGTACGCCCAGCAGCTg                                     >  2:1481752/1‑287 (MQ=255)
                                                                                                                                                                                                                                                   gctgcGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAATCCTTTCGCCAGACCAGTACCGTTACGACCGTAGAATTTGCCATCTTCCGCGCGGATCGCGTAATAATCTTTACCTTCTGAACGCAAACGTACGCCCAGCCGCTgg                                    >  2:1634589/1‑288 (MQ=255)
                                                                                                                                                                                                                                                   gctgcGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATAGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTaaaa                                                                                                                                                                                          <  2:725017/138‑1 (MQ=255)
                                                                                                                                                                                                                                                   gctgcGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATAGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTaaaa                                                                                                                                                                                          >  1:725017/1‑138 (MQ=255)
                                                                                                                                                                                                                                                    ctgcGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAATCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGCAAACGTACGCCcagcag                                        >  2:921294/1‑283 (MQ=255)
                                                                                                                                                                                                                                                    ctgcGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAATCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGCAAACGTACGCCcagcag                                        <  1:921294/283‑1 (MQ=255)
                                                                                                                                                                                                                                                     tgcGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAATCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGCAAACGTACGCCCAGCAGCTGGCtt                                 >  1:510221/1‑289 (MQ=255)
                                                                                                                                                                                                                                                       cgcCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAATCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGCAAACGTACGCCCAGCAGCTGGCttt                                >  2:544544/1‑288 (MQ=255)
                                                                                                                                                                                                                                                        gcCCCTGCGTTTGGCAACCACCACGTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGGGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAATCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGCAAACGTACGCCCAGCAGCTGGCTTTg                               <  1:1005388/288‑1 (MQ=255)
                                                                                                                                                                                                                                                         ccACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAATCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGCAAACGTACGCCCAGCAGCTGGCTTTGCt                             <  1:127131/289‑1 (MQ=255)
                                                                                                                                                                                                                                                         ccACTGCGTTTCGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAATCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGCAAACGTACGCCCAGCAGCTGGCTTTGCt                             <  2:931589/289‑1 (MQ=255)
                                                                                                                                                                                                                                                          cACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGt                                                                                                                                                                                               >  1:949061/1‑126 (MQ=255)
                                                                                                                                                                                                                                                          cACTGCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAATCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGCAAACGTACGCCCAGCAGCTGGCTTTGCTc                            <  2:670602/289‑1 (MQ=255)
                                                                                                                                                                                                                                                              gCGTTTGGCAACCACCACTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAATCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTGATAATCTTTACCTTCTGAACGCAAACGTACGCCCAGCAGCTGGCTTTGCTCACGt                        >  1:1775772/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                ttttGACAACCACCACTTCTCCGT‑ACCCACCTGACAGGCCTTGGGTACCCTGCGGCATGGCGAAATCACCACCGCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGCCGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAATCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGCAAACGTACGCCCAGCAGCTGGCTTTGCTCACGtt                       <  2:487861/287‑1 (MQ=255)
                                                                                                                                                                                                                                                                         ccaccaCTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAATCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGCAAACGTACGCCCAGCAGCTGGCTTTGCTCACGTTTACCATCAAg             <  1:482240/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                           accacTTCACCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAATCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGCAAACGTACGCCCAGCAGCTGGCTTTGCTCACGTTTACCATCAAGCa           <  1:360894/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                                   aCCGTCACCCACTGAA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAATCCTTTCGCCAGACCAGTACCGTTACGATCGTAGACTTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGCAAACGTACGCCCAGAAGCTGGCTTTGCTCACGTTTACCATCAAGCATTTCCCgg   >  2:1706719/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                                               |||                                                                                                                                                                                                                                                                                    
TCGCGACGATCGGAGCCGGTCAGCCCTTCGGTACGCGGCAGTTTTGCCGTCAGCGGGTTTACGGCCTGCTGGTTTATCCATACTTCATAGTGCAGATGCGGCCCGGTACTACGTCCGGTATTACCGGAAAGCGCGATACGGTCGCCACGTTTCACCTTCTGTCCCGGTTTCACCAGAATCTTGCGCAAGTGCATATAACGCGTGGTGTAGCTGCGACCATGACGAATAGCCACATAATAACCTGCTGCGCCACTGCGTTTGGCAACCACCACTTCACCGTCACCCACACTA‑AGCACTGGCGTACCCTGCGGCATGGCGAAATCAACACCTCTGTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGAGCTGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAATCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCACTACGCAAACGTACGCCCAGCAGCTGGCTTTGCTCACGTTTACCATCAAGCATTTCTCGAG  >  CP042583/1621081‑1621645

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A