Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F210 I1 R1 4929 268.4 3907572 96.3% 3762991 273.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,647,125 3 bp→TGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,647,1250AT98.7% 522.6 / NA 225intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base A (0/0);  major base T (113/109);  minor base C (3/0);  total (116/109)
Fisher's exact test for biased strand distribution p-value = 2.47e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,647,1260CG99.1% 525.8 / NA 225intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/0);  major base G (116/107);  minor base A (0/2);  total (116/109)
Fisher's exact test for biased strand distribution p-value = 2.34e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01
*CP0425831,647,1270TA99.6% 528.7 / NA 225intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base A (115/108);  minor base G (0/1);  total (116/109)
Fisher's exact test for biased strand distribution p-value = 4.87e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 225 total aligned reads displayed.

CATACGACTAGCCAGAATAATTCCGGCTATCGCACTTACCAGGCCACTGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCACTAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCAGGCCACAGAGAACGCCCAGCAACAACCCCGCTGCCACGCCAATCCACAGGCTTTCAGTCAGGTTAATAACCACCGCCGTGGTGACACCCGCACAGGCAATTACGGAGGCGACAGAAAGGTCAAAGTCACCGGAAGCGAGGCAGAACAACATGCCACAAGCCACCATCCCGCTCATGGAAATTGC  >  CP042583/1646846‑1647406
                                                                                                                                                                                                                                                                                       |||                                                                                                                                                                                                                                                                                       
catacgtgaaGCCAGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAatgatg                                                                                                                                                                                                                                                                                  <  1:671695/280‑1 (MQ=255)
catacgtgaaGCCAGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAatgat                                                                                                                                                                                                                                                                                   <  1:436634/279‑1 (MQ=255)
      tgaaGCCAGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGcc                                                                                                                                                                                                                                                                            >  2:823703/4‑289 (MQ=255)
        aaGCCAGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAg                                                                                                                                                                                                                                                                          >  1:1374519/2‑289 (MQ=255)
        aaGCCAGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAg                                                                                                                                                                                                                                                                          >  2:1108427/2‑289 (MQ=255)
        aaGCCAGAATAATTCCGGCTATCCCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGGGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCACGCAGACCGAAGCCGCTAGCGTAACCAAGGGCAAAGAAGATTTCATGTACAATACCGACCGACTTACCGTCTGAAGTGATGTaaggctg                                                                                                                                                                                                                                                                          >  2:476389/2‑283 (MQ=255)
            cAGAATAGTTCCGGCGATCGCGCAAACCAGGCGCGGGAGACCAAAGTAAATAATTGTGGGGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGAc                                                                                                                                                                                                                                                                        <  2:1038305/287‑1 (MQ=255)
            cAGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGAc                                                                                                                                                                                                                                                                        <  1:941410/287‑1 (MQ=255)
             aGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCaacactc                                                                                                                                                                                                                                                                     >  2:704783/1‑283 (MQ=255)
             aGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGAGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTATCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTc                                                                                                                                                                                                                                                                     >  1:1281213/1‑289 (MQ=255)
                      ccGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCt                                                                                                                                                                                                                                                            <  1:1006865/289‑1 (MQ=255)
                       cGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTg                                                                                                                                                                                                                                                           <  1:32131/289‑1 (MQ=255)
                         gCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGc                                                                                                                                                                                                                                                          >  2:1843138/1‑288 (MQ=255)
                                  gataccagtcctgagagaACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCa                                                                                                                                                                                                                                                <  1:1545316/275‑1 (MQ=255)
                                  gatACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCa                                                                                                                                                                                                                                                <  1:644989/287‑1 (MQ=255)
                                  gatACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCa                                                                                                                                                                                                                                                <  1:334592/287‑1 (MQ=255)
                                  gatACCAGGCCTGAGAGAACAAAGATAATAATTTCGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCa                                                                                                                                                                                                                                                <  1:712117/287‑1 (MQ=255)
                                          gcctgagagaACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGCACAAACTGCATCTTTGCCAATGGCgag                                                                                                                                                                                                                                        >  2:328287/7‑287 (MQ=255)
                                          gcctgagagaACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTg                                                                                                                                                                                                                                        >  1:497744/7‑289 (MQ=255)
                                              gagagaACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCACACCAAAGATAATCAGACACGCGACGGTGAGCCAGAGTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAAGCTGCACCGTTGCCAATGTCGTgtaca                                                                                                                                                                                                                                    >  2:392639/3‑285 (MQ=255)
                                              gagagaACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCa                                                                                                                                                                                                                                    <  1:1108427/287‑1 (MQ=255)
                                              gagagaACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAACCTTTCATCTTCGATCCCGACCGCGTTACCGTCTGAAATGATGTACGCCAGAACTCGAACAATCTGCATCGTTGCCAATGTCGTgcaca                                                                                                                                                                                                                                    >  2:1198577/3‑285 (MQ=255)
                                               agagaACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGc                                                                                                                                                                                                                                                  <  2:1715318/273‑1 (MQ=255)
                                               agagaACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCag                                                                                                                                                                                                                                   >  2:728056/2‑289 (MQ=255)
                                               agagaACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCag                                                                                                                                                                                                                                   >  1:1429470/2‑289 (MQ=255)
                                                    aCAACGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCat                                                                                                                                                                                                                              >  1:856654/1‑289 (MQ=255)
                                                     cAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACAGAACCAGTTGGCGTAACCAAGGGCAAAGCAGCTTTCATCTTCGATAACGACCGCATAACCGTCTGCAATGATGTACGCAAGACCTCGAACAACCTGCATCGTCGCCAATGTCAGTATCAGAACagt                                                                                                                                                                                                                             >  2:602696/1‑287 (MQ=255)
                                                               aatTGTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGt                                                                                                                                                                                                                   <  1:1704506/289‑1 (MQ=255)
                                                                   ttGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTg                                                                                                                                                                                                                >  1:405000/1‑288 (MQ=255)
                                                                    tGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACAAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGc                                                                                                                                                                                                              >  1:458210/1‑289 (MQ=255)
                                                                    tGGCGCGAACACCCGGGACACCCGCCAGACGCGCTGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGc                                                                                                                                                                                                              <  2:733786/289‑1 (MQ=255)
                                                                         cGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATaa                                                                                                                                                                                                         >  1:283955/1‑289 (MQ=255)
                                                                                     acacacGCCAGACGCGCGGCCTCTTCGTTCCTGCCAATCCCCAGGGTGTTACGACCAGACGTGGTTTTATTCAGCAGCAAACCCAAGATAAACAGACACGCGACGGTGAGCCAGACTCGCGCAGGCAGACCGAACCAGTTGGCGTAACCCATGGCTAAGAAGCTTTATTCTTCGATACCGACCGCTTTACCGTCTGAAATGCTGTACGCCAGACCTCGAACAATCTGCATCCTAGACAATGCCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAACCAtgg                                                                                                                                                                                              >  2:515574/1‑286 (MQ=255)
                                                                                     acacCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTg                                                                                                                                                                                              >  1:1655786/1‑288 (MQ=255)
                                                                                     acacCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGa                                                                                                                                                                                             <  2:283955/289‑1 (MQ=255)
                                                                                     acacCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGa                                                                                                                                                                                             <  2:931010/289‑1 (MQ=255)
                                                                                     acacCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGT‑ACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGa                                                                                                                                                                                             <  1:72863/288‑1 (MQ=255)
                                                                                       acCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGAcc                                                                                                                                                                                           <  2:833953/289‑1 (MQ=255)
                                                                                        cccGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCa                                                                                                                                                                                          >  2:289049/1‑289 (MQ=255)
                                                                                          cGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCAATTGACCAg                                                                                                                                                                                         >  1:736075/1‑288 (MQ=255)
                                                                                           gCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCCGACCGACCCAGTTGGCGGAACCCAGGGCAAAGACGCTCTCATCCTCGATCCCGACCGCTTCACCGTCCGAAAAGATGTACGCCAGACCCCGAAGAATCTGCATCGTTGCCAATTTCGTGATCAGAGCATGTATTTTCAGTTTGGCGATAACAAAGCCAGTAGCCAgg                                                                                                                                                                                        >  2:1524283/1‑288 (MQ=255)
                                                                                           gCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAatgat                                                                                                                                                                                                                                                                                   >  2:633004/1‑197 (MQ=255)
                                                                                           gCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCAgg                                                                                                                                                                                        >  1:1335636/1‑288 (MQ=255)
                                                                                           gCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCACGCAGACCGAACCAGTTGGCGTAACCAAGGGCACAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTCCATCGTTGCCAATGCCGTGAACATACCATTTATTTTCAGCTTGGCTACAACAAGGCCATTGACCAgc                                                                                                                                                                                        >  2:1827679/1‑287 (MQ=255)
                                                                                                aCGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGAACAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCAGGCCACag                                                                                                                                                                                  >  1:1669692/1‑289 (MQ=255)
                                                                                                   cgcgGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCAGGCCACAgaga                                                                                                                                                                               >  1:798815/1‑289 (MQ=255)
                                                                                                     cgGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCCGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCAGGCCACAGAGaa                                                                                                                                                                              >  2:1363041/1‑288 (MQ=255)
                                                                                                        ccTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCAGGCCACAGAGAACGc                                                                                                                                                                           <  1:505194/288‑1 (MQ=255)
                                                                                                         ctctTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCAGGCCACAGAGAACGccc                                                                                                                                                                         <  1:1149712/289‑1 (MQ=255)
                                                                                                            ttCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGACAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGAACAGGCCACAGAGCACGCCCAGc                                                                                                                                                                      >  2:937168/1‑289 (MQ=255)
                                                                                                                  cccGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCAGGCCACAGAGAACGCCCAGcaacaa                                                                                                                                                                 >  1:1168444/1‑288 (MQ=255)
                                                                                                                    cGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCAGGCCACAGAGAACGCCCAGCAACAAcc                                                                                                                                                               >  1:766475/1‑288 (MQ=255)
                                                                                                                      ccAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCAGGCCACAGAGAACGCCCAGCAACAAcccc                                                                                                                                                             >  1:1032898/1‑288 (MQ=255)
                                                                                                                      ccAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCCGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACAAGCCCACAGAGAAACCACAGCAACAAcccc                                                                                                                                                             >  2:1882811/1‑288 (MQ=255)
                                                                                                                            gCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCAGGCCACAGAGAACGCCCAGCAACAACCCCGCTGCCa                                                                                                                                                      <  1:606459/289‑1 (MQ=255)
                                                                                                                                    gtTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCAGGCCACAGAGAACGCCCAGCAACAACCCCGCTGCCACGCCAAt                                                                                                                                               >  1:1849588/1‑288 (MQ=255)
                                                                                                                                    gtTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCAGGCCACAGAGAACGCACAGCAACAACCACGCTGCCACGCCAAt                                                                                                                                               >  1:1809367/1‑288 (MQ=255)
                                                                                                                                      tACGACCAAAGGTGGTTTTATCCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCAGGCCACAGAGAACGCCCAGCAACAACCCCGCTGCCACGCCAATCca                                                                                                                                            <  2:756575/289‑1 (MQ=255)
                                                                                                                                        cGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCAGGCCACAGAGAACGCCCAGCAACAACCCCGCTGCCACGCCAATCcaaa                                                                                                                                          >  1:1409476/1‑287 (MQ=255)
                                                                                                                                             aaaGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCAGGCCACAGAGAACGCCCAGCAACAACCCCGCTGCCACGCCAATCCACAGGCtt                                                                                                                                     >  1:776964/1‑289 (MQ=255)
                                                                                                                                               aGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCAGGCCACAGAGAACGCCCAGCAACAACCCCGCTGCCACGCCAATCCACAGGCTTtc                                                                                                                                   >  1:1782352/1‑289 (MQ=255)
                                                                                                                                               aGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCAGGCCACAGAGAACGCCCAGCAACAACCCCGCGGCCACGCCAATCCACAGGcgtac                                                                                                                                   >  2:1232878/1‑285 (MQ=255)
                                                                                                                                                   ggtTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCAGGCCACAGAGAACGCCCAGCAACAACCCCGCTGCCACGCCAATCCACAGGCTTtcagtc                                                                                                                               <  1:183701/289‑1 (MQ=255)
                                                                                                                                                    gtTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCCTCTTCGATACCGACCGCTTTACCGTCTGAAACGATGTACGCCAGACCTCTAACAATCTGCATCGTTGCCAATTTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCAGGCCACCGAGAACCCACAGAAACAACCCCGCCGCCACACCAATCCACAGGCTTtcagtta                                                                                                                              >  2:1156921/1‑287 (MQ=255)
                                                                                                                                                                  caAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCAGGCCACAGAGAACGCCCAGCAACAACCCCGCTGCCACGCCAATCCACAGGCTTTCAGTCAGGTTAATAaccac                                                                                                                 >  2:1056086/1‑288 (MQ=255)
                                                                                                                                                                    aaCCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCAGGCCACAGAGAACGCCCCACAACAACCCCGCTGCCACGCCAAACCACAGGCTTTCAGTAAGGGTAATAACCAccg                                                                                                               >  2:1004228/1‑288 (MQ=255)
                                                                                                                                                                     aCCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAATGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCTACCAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAATCCATTGCCCAGTCCACAGAGAACGCCCAGCAACAACCCCGCTGc                                                                                                                                                        <  1:1196792/246‑1 (MQ=255)
                                                                                                                                                                     aCCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCAGGCCACAGAGAACGCCCAGCAACAACCCCGCTGCCACGCCAATCCACAGGCTTTCAGTCAGGTTAATAACCAccgcc                                                                                                             <  1:289049/289‑1 (MQ=255)
                                                                                                                                                                          aGATATGCAGACCCGCGACGGTGAGCCAGATTGGCGCAGGCAGCCCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCAGGCCACAGAGAACGCCCAGCAACAACCCCGCTGCCACGCCAATCCACAGGCTTTCAGTCAGGTTAATAACCACCGCCgtggt                                                                                                        <  1:1736028/289‑1 (MQ=255)
                                                                                                                                                                          aGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCAGGCCACAGAGAACGCCCAGCAACAACCCCGCTGCCACGCCAATCCACAGGCTTTCAGTCAGGTTAATAACCACCGCCgtggt                                                                                                        <  1:1068339/289‑1 (MQ=255)
                                                                                                                                                                          aGATAATCAGACACGAGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCAGGCCACAGAGAACGCCCAGCAACAACCCCGCTGCCACGCCAATCCACAGGCTTTCAGTCAGGTTAATAACCACCGCCgtggt                                                                                                        <  1:1867351/289‑1 (MQ=255)
                                                                                                                                                                                     cacGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCAGGCCACAGAGAACGCCCAGCAACAACCCCGCTGCCACGCCAATCCACAGGCTTTCAGTCAGGTTAATAACCACCGCCGTGGTGACACCCGca                                                                                              <  2:776964/288‑1 (MQ=255)
                                                                                                                                                                                      acGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCAGGCCACAGAGAACGCCCAGCAACAACCCCGCTGCCACGCCAATCCACAGGCTTTCAGTCAGGTTAATAACCACCGCCGTGGTGACACCCGcaca                                                                                            <  2:1407590/289‑1 (MQ=255)
                                                                                                                                                                                      acGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCAGGCCACAGAGAACGCCCAGCAACAACCCCGCTGCCACGCCAATCCACAGGCTTTCAGTCAGGTTAATAACCACCGCCGTGGTGACACCCGcaca                                                                                            <  1:704259/289‑1 (MQ=255)
                                                                                                                                                                                        gcgACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCAGGCCACAGAGAACGCCCAGCAACAACCCCGCTGCCACGCCAATCCACAGGCTTTCAGTCAGGTTAATAACCAccgcc                                                                                                             <  1:233210/270‑1 (MQ=255)
                                                                                                                                                                                        gcgACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCAGGCCACAGAGAACGCCCAGCAACAACCCCGCTGCCACGCCAATCCACAGGCTTTCAGTCAGGTTAATAACCAccgcc                                                                                                             >  2:233210/1‑270 (MQ=255)
                                                                                                                                                                                           aCGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCAGGCCACAGAGAACGCCCAGCAACAACCCCGCTGCCACGCCAATCCACAGGCTTTCAGTCAGGTTAATAACCACCGCCGTGGTGACACCCGCACAGGCaa                                                                                       >  1:1041722/1‑289 (MQ=255)
                                                                                                                                                                                           aCGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCAGGCCACAGAGAACGCCCAGCAACAACCCCGCTGCCACGCCAATCCACAGGCTTTCAGTCAGGTTAATAACCACCGCCGTGGTGACACCCGCACAGGCaa                                                                                       >  1:1948771/1‑289 (MQ=255)
                                                                                                                                                                                              gTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCAGGCCACAGAGAACGCCCAGCAACAACCCCGCTGCCACGCCAATCCACAGGCTTTCAGTCAGGTTAATAACCAccg                                                                                                               <  2:1908500/262‑1 (MQ=255)
                                                                                                                                                                                              gTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCAGGCCACAGAGAACGCCCAGCAACAACCCCGCTGCCACGCCAATCCACAGGCTTTCAGTCAGGTTAATAACCAccg                                                                                                               >  1:1908500/1‑262 (MQ=255)
                                                                                                                                                                                                gacccAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCTAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCAGGCCACAGAGAACGCCCAGCAACAACCCCGCTGCCACGCCAATCCACAGGCTTTCAGTCAGGTTAATAACCACCGCCGTGGTGACACCCGCACAGGCAATTACg                                                                                  <  1:1882811/286‑1 (MQ=255)
                                                                                                                                                                                                gAGCCAGATTGGCGCAGGCAGACCGAACCCCTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCAGGACACAGAGAACGACATGCAACAACCCCGCTGCCACGCCAAACCCCCGGCTATCAGTAAAGGTAATCAACCCCGCCGTGCAAGAACCCGCACAGGACATTag                                                                                   >  2:1385940/1‑287 (MQ=255)
                                                                                                                                                                                                            cgcAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCAGGCCACAGAGAACGCCCAGCAACAACCCCGCTGCCACGCCAATCCACAGGCTTTCAGTCAGGTTAATAACCACCGCCGTGGTGACACCCGCACAGGCAATTACGGAGGCGACAGa                                                                       <  1:12149/288‑1 (MQ=255)
                                                                                                                                                                                                                 gcagACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCAGGCCACAGAGAACGCCCAGCAACAACCCCGCTGCCACGCCAATCCACAGGCTTTCAGTCAGGTTAATAACCACCGCCGTGGTGACACCCGCACAGGCAATTACGGAGGCTACAGAAAGGTc                                                                 >  1:851731/1‑289 (MQ=255)
                                                                                                                                                                                                                     aCCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCAGGCCACAGAGAACGCCCAGCAACAACCCCGCTGCCACGCCAATCCACAGGCTTTCAGTCAGGTTAATAACCACCGCCGTGGTGACACCCGCACAGGCAATTACGGAGGCGACAGAAAGGTCAAAg                                                             >  2:1336017/1‑289 (MQ=255)
                                                                                                                                                                                                                     aCCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCAGGCCACAGAGAACGCCCAGCAACAACCCCGCTGCCACGCCAATCCACAGGCTTTCAGTCAGGTTAATAACCACCGCCGTGGTGACACCCGCACAGGCAATTACGGAGGAGACAGAAAGGTCAAAg                                                             >  1:629459/1‑289 (MQ=255)
                                                                                                                                                                                                                      ccGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCAGGCCACAGAGAACGCCCAGCAACAACCCCGCTGCCACGCCAATCCACAGGCTTTCAGTCAGGTTAATAACCACCGCCGTGGTGACACCCGCACAGGCAATTACGGAGGCGACAGAAAGGTCaaa                                                              <  2:1782352/287‑1 (MQ=255)
                                                                                                                                                                                                                      ccGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGAATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCAGGCCACAGAGAACGCCCAGCAACAACCCCGCTGCCACGCCAATCCACAGGCTTTCAGTCAGGTTAATAACCACCGCCGTGGTGACACCCGCACAGGCAATTACGGAGGCGACAGAAAGGTCaaa                                                              <  2:1929399/287‑1 (MQ=255)
                                                                                                                                                                                                                           ccAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCAGGCCACAGAGAACGCCCAGCAACAACCCCGCTGCCACGCCAATCCACAGGCTTTCAGTCAGGTTAATAACCACCGCCgtggt                                                                                                        <  2:907932/240‑1 (MQ=255)
                                                                                                                                                                                                                                 ggCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCAGGCCACAGAGAACGCCCAGCAACAACCCCGCTGCCACGCCAATCCACAGGCTTTCAGTCAGGTTAATAACCACCGCCGTGGTGACACCCGCACAGGCAATTACGGAGGCGACAGAAAGGTCAAAGTCACCGGAAGCg                                                 >  1:1631825/1‑289 (MQ=255)
                                                                                                                                                                                                                                      aaCCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCAGGCCACAGAGAACGCCCAGCAACAACCCCGCTGCCACGCCAATCCACAGGCTTTCAGCAAGGTTAATAACCACCGCCGTGGTGACACCCGCCCAGGCAATTAAGGAGGCGACAGAAAGGTCAAAGTCACCGGAAGAGAGGCa                                            >  1:98740/1‑289 (MQ=255)
                                                                                                                                                                                                                                            gggCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCAGGCCACAGAGAACGCCCAGCAACAACCCCGCTGCCACGCCAATCCACAGGCTTTCAGTCAGGTTAATAACCACCGCCgtggt                                                                                                        >  1:156469/1‑223 (MQ=255)
                                                                                                                                                                                                                                            gggCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCAGGCCACAGAGAACGCCCAGCAACAACCCCGCTGCCACGCCAATCCACAGGCTTTCAGTCAGGTTAATAACCACCGCCgtggt                                                                                                        <  2:156469/223‑1 (MQ=255)
                                                                                                                                                                                                                                                  agaagCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCAGGCCACAGAGAACGCCCAGCAACAACCCCGCTGCCACGCCAATCCACAGGCTTTCAGTCAGGTTAATAACCACCGCCGTGGTGACACCCGCACCGGCAATTACGGAGTCGACAGAAAGGTCAAAGTCACCGGAACCCAGGCAGAACAACATGc                                 >  2:738317/1‑288 (MQ=255)
                                                                                                                                                                                                                                                  agaagCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCAGGCCACAGAGAACGCCCAGCAACAACCCCGCTGCCACGCCAATCCACAGGCTTTCAGTCAGGTTAATAACCACCGCCGTGGTGACACCCGCACAGGCAATTACGGAGGCGACAGAAAGGTCAAAGTCACCGGAAGCGAGGCAGAACAACATGcg                                >  1:362311/1‑288 (MQ=255)
                                                                                                                                                                                                                                                  agaagCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCAGGACACAGAGAACGCCCAGCAACAACCCCGCTGCCACGCCAATCCACAGGCTTTCAGTCAGGTTAATAACCACCGCCGTGGTGACACCCGCACAGGCCATAACGGAGGCGAACGCAAGGTCAAAATTACAGGAAGCAAGGCAGAATAACAAGc                                 >  2:1795082/1‑288 (MQ=255)
                                                                                                                                                                                                                                                       cTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCAGGCCACAGAGAACGCCCAGCAACAACCCCGCTGCCACGCCAATCCACAGGCTTTCAGTCAGGTTAATAACCACCGCCGTGGTGACACCCGCACAGGCAATTACGGAGGCGACAGAAAGGTCAAAGTCACCGGAAGCGAGGCAGAACAACATGCCACaa                            >  1:540065/1‑288 (MQ=255)
                                                                                                                                                                                                                                                          tCATTTTCGATACCGTCCGCTTTACCGACTGAAAGGAGGTACGCCAGACCTCGGACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCATGCCGCAGAGAACGCCCAGAAACAACCCCGCTGCCACGCCAATCCACAGGCTTTCAGTCAGGTTAATAACCACCGCCGTGGTGACACCCGCACAGGCAATTACGGAGGCGACAGAAAGGTCAAAGTCACCGGAAGCGAGGCAGAACAACATGCCACAAGcca                        <  2:856654/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                 cgagaacgaccgCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTAATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCAGTGACCAGGCCACAGAGAACGCCCAGCAACAACCCCGCTGCCACGCCAATCCACAGGCTTTCAGTCAGGTTAATAACCACCGCCGTGGTGACACCCGCACAGGCAATTACGGAGGCGACAGAAAGGTCAAAGTCACCGGAAGCGAGGCAGAACAACATGCCACAAGCCACCATccc                 <  1:937168/283‑1 (MQ=255)
                                                                                                                                                                                                                                                                    tACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCagag                                                                                                                                                                                                                                 >  2:1510651/1‑78 (MQ=255)
                                                                                                                                                                                                                                                                                       |||                                                                                                                                                                                                                                                                                       
CATACGACTAGCCAGAATAATTCCGGCTATCGCACTTACCAGGCCACTGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCACTAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCAGGCCACAGAGAACGCCCAGCAACAACCCCGCTGCCACGCCAATCCACAGGCTTTCAGTCAGGTTAATAACCACCGCCGTGGTGACACCCGCACAGGCAATTACGGAGGCGACAGAAAGGTCAAAGTCACCGGAAGCGAGGCAGAACAACATGCCACAAGCCACCATCCCGCTCATGGAAATTGC  >  CP042583/1646846‑1647406

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A