Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F210 I1 R1 4929 268.4 3907572 96.3% 3762991 273.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,975,635 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,975,6350GC99.4% 762.0 / NA 328intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/2);  new base C (169/156);  total (169/159)
Fisher's exact test for biased strand distribution p-value = 2.33e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01
*CP0425831,975,6360CG99.1% 746.3 / NA 328intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (1/2);  new base G (167/157);  total (169/159)
Fisher's exact test for biased strand distribution p-value = 6.14e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01
*CP0425831,975,6370TA100.0% 775.9 / NA 328intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base A (169/159);  total (169/159)

Only 100 of 328 total aligned reads displayed.

CGGACGACGTTCTTTGCCGATAGATTCCTGCAACAGCATCAGTGCCTGCATGTACGCTTCAGGACGCGGCGGGCAGCCCGGGATATACACATCAACCGGGATGAATTTATCGACGCCCTGCACAACGGAATAAATATCGTACATACCACCAGAGTTGGCACAGGCACCCATACTGATAACCCATTTTGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑GCTAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAAGCTAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATACTGTTTTTACGACCCCAGTTAACCATGTCATTGAGCTTGCCCATAAACACGTTTTTGTTAACTTCTTGCTCCAGAGGGTCGGTTACGATCTCCTGCTTTTGCAGGGGGTAACGGTCGTTCTCACCGTTGGGATCTATGCGGGTGAGCGTATAATCCATCTTAATGCCT  >  CP042583/1975356‑1975911
                                                                                                                                                                                                                                                                                         |||                                                                                                                                                                                                                                                                                  
 ggACGACGTTCTTTGCCGATAGATTCCTGCAACAGCATCAGTGCCTGCATGTACGCTTCAGGACGCGGCGGGCAGCCCGGGATATACACATCAACCGGGATGAATTTATCGACGCCCTGCACAACGGAATAAATATCGTACATACCACCAGAGTTGGCACAGGCACCCATTGAGATAACCCATTTTGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACg                                                                                                                                                                                                                                                                              <  2:261039/287‑1 (MQ=255)
                  gATAGATTCCTGCAACAGCATCAGTGCCTGCATGTACGCTTCAGGACGCGGCGGGCAGCCCGGGATATACACATCAACCGGGATGAATTTATCGACGCCCTGCACAACGGAATAAATATCGTACATACCACCAGAGTTGGCACAGGCACCCATTGAGATAACCCATTTTGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAAACACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCaaaa                                                                                                                                                                                                                                                           >  1:396008/1‑289 (MQ=255)
                  gATAGATTCCTGCAACAGCATCAGTGCCTGCATGTACGCTACCGGACGCGGCGGGCAGCCCGGGATATACACATCAACCGGGATCAATTTATTGACGCCCTGCACAACGGACTCAATATCCTACATACCACAGGAGCTGGCCCAGGCACCCATTGAGATAACCCATTTTGGTTCCAGCATCTGGTCATACACACGCTGAATAACCGGTGCCATTTTCGTAACGCAGGT‑CACCGCAACCACCATCAGGTAAGCCATACCCGG‑CGAAGCAAGAATTACTTCTGCCCCcaa                                                                                                                                                                                                                                                            >  2:439545/1‑288 (MQ=255)
                   aTAGATTCCTGCAACAGCATCAGTGCCTGCATTTACGCTTCAGGACGCGGCGGGCAGCCCGGGATATACACATCAACCGGGATGAATTTATCGACGCCCTGCACAACGGAATAAATATCGTACATACCACCAGAGTTGGCACAGGCACCCATTGAGATAACCCATTTTGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCaaaa                                                                                                                                                                                                                                                           >  2:1602041/1‑288 (MQ=255)
                        ttCCTGCAACAGCATCAGTGCCTGCATGTCCCGTTCAGGACGCGGCTGGCAGCCCGGGATATACACATCAACCGTGATGAATTTATCGACGCCCTGCACAACGGAATAAATATCGTACATACCACCAGAGTTGGCACAGGCACCCATTGAGATAACCCATTTTGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGcc                                                                                                                                                                                                                                                     <  1:1094539/289‑1 (MQ=255)
                        ttCCTGCAACAGCATCAGTGCCTGCATGTACGCTTCAGGACGCGGCTGGCAGCCCGGGATATACACATCAACCGGGATGAATTTATCGACGCCCTGCACAACGGAATAAATATCGTACATACCACCATAGTTGGCACAGGCACCCATTGAGATAACCCATTTTGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATAATTATGAGCCAAAAcgcg                                                                                                                                                                                                                                                       <  1:56500/287‑1 (MQ=255)
                        ttCCTGCAACAGCATCAGTGCCTGCATGTACGCTTCAGGACGCGGCGGGCAGCCCGGGATATACACATCAACCGGGATGAATTTATCGACGCCCTGCACAACGGAATAAATATCGTACATACCACCAGAGTTGGCACAGGCACCCATTGAGATAACCCATTTTGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGcc                                                                                                                                                                                                                                                     <  1:1197155/289‑1 (MQ=255)
                        ctCCTGCAACCACATCACTGACTCGATGTACGCGTCAGGACGGAGCGGGCAGCCCGGGATAATCACAACAACCGGGATGAATTTATCGACGACCTGCACAACGGGATAAATATCGTACATACCACCAGAGTTGGCACAGGCACCCATTGAGATAACCCATTTTGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGcc                                                                                                                                                                                                                                                     <  2:311127/288‑1 (MQ=255)
                           cTGCAACAGCATCAGTGCCTGCATGTACGCTTCAGGACGCGGCGGGCAGCCCGGGATATACACATCAACCGGGATGAATTTATCGACGCCCTGCACAACGGAATAAATATCGTACATACCACCAGAGTTGGCACAGGCACCCATTGAGATAACCCATTTTGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACg                                                                                                                                                                                                                                                  <  1:622383/289‑1 (MQ=255)
                                  aGCATCAGTGCCTGCATGTACGCTTCAGGACGCGGCGGGCAGCCCGGGATATACACATCAACCGGGATGAATTTATCGACGCCCTGCACAACGGAATAAATATCGTACATACCACCAGAGTTGGCACAGGCACCCATTGAGATAACCCATTTTGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGc                                                                                                                                                                                                                                            >  1:842589/1‑288 (MQ=255)
                                       cAGTGCCTGCATGTACGCCTCAGGACGCGGCGGGCAGCCCGAGATATACACATCAACCGGGATGAATTTATCGACGCCCTGCACAACGGAATAAATATCGTACATACCACCAGAGTTGGCACAGGCACCCATTGAGATAACCCATGTTGGTTACAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACcgcg                                                                                                                                                                                                                                      <  2:1164106/289‑1 (MQ=255)
                                                    tACGCTTCAGGACGCGGCGGGCAGCCCGGGATATACACATCAACCGGGATGAATTTATCGACGCCCTGCACAACGGAATAAATATCGTACATACCACCAGAGTTGGCACAGGCACCCATTGAGATAACCCATTTTGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTaaacgaagtc                                                                                                                                                                                                                          >  1:936733/1‑281 (MQ=255)
                                                      cGCTTCAGGACGCGGCGGGCAGCCCGGGATATACACATCAACCGGGATGAATTTATCGACGCCCTGCACAACGGAATAAATATCGTACATACCACCAGAGTTGGCACAGGCACCCATTGAGATAACCCATTTTGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGACACGTCATGCACCGCGGTAAACGAAGTCAcc                                                                                                                                                                                                                       >  2:864402/1‑289 (MQ=255)
                                                           cAGGACGCGGCGGGCAGCCCGGGATATACACATCAACCGGGATGAATTTATCGACGCCCTGCACAACGGAATAAATATCGTACATACCACCAGAGTTGGCACAGGCACCCATTGAGATAACCCATTTTGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCAtccc                                                                                                                                                                                                                  >  1:887984/1‑287 (MQ=255)
                                                              gACGCGGCGGGCAGCCCGGGATATACACATCAACCGGGATGAATTTATCGACGCCCTGCACAACGGAATAAATATCGTACATACCACCAGAGTTGGCACAGGCACCCATTGAGATAACCCATTTTGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAAc                                                                                                                                                                                                               >  1:1665879/1‑289 (MQ=255)
                                                                   ggcggGCAGCCCGGGATATACACATCAACCGGGATGAATTTATCGACGCCCTGCACAACGGAATAAATATCGTACATACCACCAGAGTTGGCACAGGCACCCATTGAGATAACCCATTTTGGTTCCAGCATCTGGTCATATAGACGATGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TTCTGCACCCACCATCAGGTCAGCCTGACGCCG‑CGAAGCACGCAATACTTCTGCGCCATATAGACCCCCGTCATGCCCCGCCGTAAACGAAGTCAACATCCAAACCTaa                                                                                                                                                                                                           >  2:154978/1‑288 (MQ=255)
                                                                   ggcggGCAGCCCGGGATATACACATCAACCGGGATGAATTTATCGACGCCCTGCACAACGGAATAAATATCGTACATACCACCAGAGTTGGCACAGGCACCCATTGAGATAACCCATTTTGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAAc                                                                                                                                                                                                          >  1:597239/1‑289 (MQ=255)
                                                                   ggcggGCAGCCCGGGATATACACATCAACCGGGATGAATTTATCGACGCCCTGCACAACGGAATAAATATCGTACATACCACCAGAGTTGGCACAGGCACCCATTGAGATAACCCATTTTGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAAc                                                                                                                                                                                                          >  1:546133/1‑289 (MQ=255)
                                                                   ggcggGCAGCCCGGGATATACACATCAACCGGGATGAATTTATCGACGCCCTGCACAACGGAATAAATATCGTACATACCACCAGAGTTGGCACAGGCACCCATTGAGATAACCCATTTTGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCCCGGTAAACAAAGTCACCACCCCAACGTAAc                                                                                                                                                                                                          >  2:1533945/1‑289 (MQ=255)
                                                                           gCCCGGGATATACACATCAACCGGGATGAATTTATCGACGCCCTGCACAACGGAATAAATATCGTACATACCACCAGAGTTGGCACAGGCACCCATTGAGATAACCCATTTTGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACCTCGGCGCCAAAACTCCCCAACTCATGCACCGCGGTAAACGAAGTACCCATCGCAACGTACCAGCAGGac                                                                                                                                                                                                  >  2:1868899/1‑288 (MQ=255)
                                                                                   taaaaacaTCAACCGGGATGAATTTGTCGACGCCATGCACAACGGAATAAATAGCGTACATACCACCAGAGTGGGCACAGGCACCCATTGGGATAACCCATTTTGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCGGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGaa                                                                                                                                                                                          <  2:1050908/284‑1 (MQ=255)
                                                                                          aTCAACCGGGATGAATTTATCGACGCCCTGCACAACGGAATAAATATCGTACATACCACCAGAGTTGGCACAGGCACCCATTGAGATAACCCATTTTGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATAc                                                                                                                                                                                   >  1:384794/1‑289 (MQ=255)
                                                                                          aTCAACCGGGATGAATTTATCGACGCCCTGCACAACGGAATAAATATCGTACATACCACCAGAGTTGGCACAGGCACCCATTGAGATAACCCATTTTGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATAc                                                                                                                                                                                   >  1:1582708/1‑289 (MQ=255)
                                                                                          aTCAACCGGGATGAATTTATCGACGCCCTGCACAACGGAATAAATATCGTACATACCACCAGAGTTGGCACAGGCACCCATTGAGATAACCCATTTTGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATAc                                                                                                                                                                                   >  1:138402/1‑289 (MQ=255)
                                                                                               ccGGGATGAATTTATCGACGCCCTGCACAACGGAATAAATATCGTACATACCACCAGAGTTGGCACAGGCACCCATTGAGATAACCCATTTTGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCa                                                                                                                                                                              >  1:707127/1‑289 (MQ=255)
                                                                                               ccGGGATGAATTTATCGACGCCCTGCACAACGGAATAAATATCGTACATACCACCAGAGTTGGCACAGGCACCCATTGAGATAACCCATTTTGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCa                                                                                                                                                                              >  2:1581833/1‑289 (MQ=255)
                                                                                               ccGGGATGAATTTATCGACGCCCTGCACAACGGAATAAATATCGTACATACCACCAGAGTTGGCACAGGCACCCATTGAGATAACCCATTTTGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCa                                                                                                                                                                              >  1:1548156/1‑289 (MQ=255)
                                                                                               ccGGGATGAATTTATCGACGCCCTGCACAACGGAATAAATATCGTACATACCACCAGAGTTGGCACAGGCACCCATTGAGATAACCCATTTTGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCCCAACGTAACAGACGGAAAGCCCGAAGCTATACGGCCa                                                                                                                                                                              >  2:905197/1‑289 (MQ=255)
                                                                                                   gATGAATTTATCGACGCCCTGCACAACGGAATAAATATCGTACATACCACCAGAGTTGGCACAGGCACCCATTGAGATAACCCATTTTGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAAt                                                                                                                                                                           <  2:1120430/288‑1 (MQ=255)
                                                                                                           tATCGACGCCCTGCACAACGGAATAAATATCGTACATACCACCAGAGTTGGCACAGGCACCCATTGAGATAACCCATTTTGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGttttt                                                                                                                                                                  <  1:1932752/289‑1 (MQ=255)
                                                                                                                   cccTGCACAACGGAATAAATATCGTACATACCACCAGAGTTGGCACAGGCACCCATTGAGATAACCCATTTTGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGTTTTTACGAcccc                                                                                                                                                          <  1:910863/289‑1 (MQ=255)
                                                                                                                       gCACAACGGAATAAATATCGTACATACCACCAGAGTTGGCACAGGCACCCATTGAGATAACCCATTTTGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGTTTTTACGACCCCAGtt                                                                                                                                                      >  1:819537/1‑289 (MQ=255)
                                                                                                                       gCACAACAGAATAAATATCACAGATACCACCAGCGTTGGCACAGTCACCCATTGAGATAACCCATTTTGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGTTTTTACGACCCCAGtt                                                                                                                                                      <  2:788359/289‑1 (MQ=255)
                                                                                                                         acaACGGAATAAATATCGTACATACCACCAGAGTTGGCACAGGCGCCCATTGGGATAACCCATTTTGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGTTTTTACGACCCCAGTTaa                                                                                                                                                    <  1:1464779/289‑1 (MQ=255)
                                                                                                                         acaACGGAATAAATATCGTACATACCACCAGAGTTGGCACAGGCACCCATTGAGATAACCCATTTTGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGTTTTTACGACCCCAGTTaa                                                                                                                                                    <  1:1323619/289‑1 (MQ=255)
                                                                                                                         acaACGGAATAAATATCGTACATACCACCAGAGTTGGCACAGGCACCCATTGAGATAACCCATTTTGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGTTTTTACGACCCCAGTTaa                                                                                                                                                    <  2:132454/289‑1 (MQ=255)
                                                                                                                           aaCGGAATAAATATCGTACATACCACCAGAGTTGGCACAGGCACCCATTGAGATAACCCATTTTGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGTTTTTACGACCCCAGTTAAcc                                                                                                                                                  <  1:1533945/289‑1 (MQ=255)
                                                                                                                            aCGGAATAAATATCGTACATACCACCAGAGTTGGCACAGGCACCCATTGAGATAACCCATTTTGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGTTTTTACGACCCCAGTTAACCa                                                                                                                                                 >  1:1432087/1‑289 (MQ=255)
                                                                                                                             cGGAATAAATATCGTACATACCACCAGAGTTGGCACAGGCACCCATTGAGATAACCCATTTTGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCAtct                                                                                                                                                                                                                   >  1:1301674/1‑222 (MQ=255)
                                                                                                                             cGGAATAAATATCGTACATACCACCAGAGTTGGCACAGGCACCCATTGAGATAACCCATTTTGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGTTTTTACGACCCCAGTTAACCAt                                                                                                                                                >  2:377437/1‑289 (MQ=255)
                                                                                                                             cGGAATAAATATCGTACATACCACCAGAGTTGGCACAGGCACCCATTGAGATAACCCATTTTGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGTCTTTACGACCCCAGTTAACCAt                                                                                                                                                >  2:527796/1‑289 (MQ=255)
                                                                                                                                     atatCGTACATACCACCAGAGTTGGCACAGGCACCCATTGAGATAACCCATTTTGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGTTTTTACGACCCCAGTTAACCATGTCATTGa                                                                                                                                        >  1:859471/1‑289 (MQ=255)
                                                                                                                                       atCGTACATACCACCAGAGTTGGCACAGGCACCCATTGAGATAACCCATTTTGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGTTTTTACGACCCCAGTTAACCATGTCATTGa                                                                                                                                        >  1:1736085/1‑287 (MQ=255)
                                                                                                                                        tCGTACATACCACCAGAGTTGGCACAGGCACCCATTGAGATAACCCATTTTGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGTTTTTACGACCCCAGTTAACCATGTCATTGGGCt                                                                                                                                     <  1:258537/289‑1 (MQ=255)
                                                                                                                                          gTACATACCACCAGAGTTGGCACAGGCACCCATTGAGATAACCCATTTTGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAACCGGAGTCACCATCCCAACGTAAACGCAGGAAAGACCGAAGTTATACGGCCAAATCGCGTCTTTACGACTCCAGGTAACCCTGTAATTGAGAtt                                                                                                                                    >  2:1395757/1‑288 (MQ=255)
                                                                                                                                                accaccAGAGTTGGCACAGGCACCCATTGAGATAACCCATTTTGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGTTTTTAAGACCCCAGTTAACAATGTCATTGAGCTTGCCGATa                                                                                                                             >  2:505898/1‑289 (MQ=255)
                                                                                                                                                    ccaGAGTTGGCACAGGCACCCATTGAGATAACCCATTTTGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGTTTTTACGACCCCAGTTAACCATGTCATTGAGCTTGCCCATAAaca                                                                                                                         <  2:719341/289‑1 (MQ=255)
                                                                                                                                                     caGAGTTGGCACAGGCACCCATTGAGATAACCCATTTTGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCaa                                                                                                                                                                                                                >  2:595011/1‑201 (MQ=255)
                                                                                                                                                     caGAGTTGGCACAGGCACCCATTGAGATAACCCATTTTGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGt                                                                                                                                                                                                             >  1:787414/1‑204 (MQ=255)
                                                                                                                                                          ttGGCACAGGCACCCATTGAGATAACCCATTTTGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGTTTTTACGACCCCAGTTAACCATGTCATTGAGCTTGCCCATAAACACGtttt                                                                                                                   >  1:1021963/1‑289 (MQ=255)
                                                                                                                                                            ggCACAGGCACCCATTGAGATAACCCATTTTGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGTTTTTACGACCCCAGTTAACCATGTCATTGAGCTTGCCCATAAACACGTTTTTg                                                                                                                 >  1:1353440/1‑289 (MQ=255)
                                                                                                                                                            ggCACAGGCACCCATTGAGATAACCCATTTTGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGGCACCATCTCAACGTAACAGCAGGACAGACCGAAGTTATACGGCCAAATTGAGTTTTTACCACCCCAGTTAACCATGTCATTGAGCTTGCCCAAAAACAGGTTTTTg                                                                                                                 >  2:559396/1‑289 (MQ=255)
                                                                                                                                                            ggCACAGGCACCCATTGAGATAACCCATTTTGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAACAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGTTTTTACGACCCCAGTTAAcc                                                                                                                                                  <  2:208507/256‑1 (MQ=255)
                                                                                                                                                                  ggCACCCATTGAGATAACCCATTTTGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGTTTTTACGACCCCAGTTAACCATGTCATTGATCCCGCCCAGAAACACGTTTTTGTTaaat                                                                                                           >  2:935846/1‑287 (MQ=255)
                                                                                                                                                                     acccatggagATAACCCATTTTGGTTCATGCATCTGGTAATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCGGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGTTTTTACGACCCCAGTTAACCATGTCATTGAGCTTGCCCATAAACACGTTTTTGTTAActtc                                                                                                         <  2:827328/279‑1 (MQ=255)
                                                                                                                                                                      cccattgagATAACCCATTTTGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGTTTTTACGACCCCAGTTAACCATGTCATTGAGCTTGCCCATAAACACGTTTTTGTTAActtctt                                                                                                       >  1:1069608/9‑289 (MQ=255)
                                                                                                                                                                       ccattgagATAACCCATTTTGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGTTTTTACGACCCCAGTTAACCATGTCATTGAGCTTGCCCATAAACACGTTTTTGTTAActtctt                                                                                                       >  1:226386/8‑288 (MQ=255)
                                                                                                                                                                       caattgagATAACCCATTTTGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGTTTTTACGACCCCAGTTAACCATGTCATTGAGCTTGCCCATAAACACGTTTTTGTTAACTTCTTg                                                                                                      <  1:1050821/282‑1 (MQ=255)
                                                                                                                                                                                 aaCCCATTTTGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCATGCCATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGTTTTTACGACCCCAGTTAACCATGTCATTGAGCTTGCCCATAATCACGTTTTTGTTAAATTCTTGCTCCATAggg                                                                                            >  2:1790058/1‑289 (MQ=255)
                                                                                                                                                                                 aaCCCATTTTGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGTTTTTACGACCCCAGTTAACCATGTCATTGAGCTTGCCCATAAACACGTTTTTGTTAACTTCTTGCTCCAGAggg                                                                                            <  1:581779/289‑1 (MQ=255)
                                                                                                                                                                                  aCCCATTTTGGTTCAACAAGCTGGTCATACAGAAGCTCAATAAGCGGGGCCATTTGGGTAAAGCAGGT‑TCCGGCAACCACCATCAGGTCAGCCAGAAGCGG‑CGAAGAAAGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGTTTTTACGACCCCAGTTAACCATGTCATTGAGCTTGCCCATAAACACGTTTTTGTTAACTTCTTGCTCCAGAGGGt                                                                                           <  2:1488748/289‑1 (MQ=255)
                                                                                                                                                                                   cccATTTTGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGTTTTTACGACCCCAGTTAACCATGTCATTGAGCTTGCCCATAAACACGTTTTTGTTAActtct                                                                                                        >  2:1632017/1‑275 (MQ=255)
                                                                                                                                                                                     cATTTTGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGTTTTTACGACCCCAGTTAACCATGTCATTGAGCTTGCCCATAAACACGTTTTTGTTAACTTCTTGCTCCAGAGGGTCgg                                                                                        <  2:686597/289‑1 (MQ=255)
                                                                                                                                                                                         ttGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGTTTTTACGACCCCAGTTAACCATGTCATTGAGCTTGCCCATAAACACGTTTTTGTTAACTTCTTGCTCCAGAGGGTCGGTTAc                                                                                    >  1:1894791/1‑289 (MQ=255)
                                                                                                                                                                                         ttGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGTTTTTACGACCCCAGTTAACCATGTCATTGAGCTTGCCCATAAACACGTTTTTGTTAACTTCTTGCTCCAGAGGGTCGGTTAc                                                                                    >  1:1615412/1‑289 (MQ=255)
                                                                                                                                                                                                 accATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCCTCGCGGTAAACGAAGTCTCCATCTCAACGTAACAGCAGGAAAGACCGAAGTCATTCGGCCAAATTGAGCTTTTACTACTCCAGTTAACCTTGTCATTGACCTTGCCCATAAATCCTGTTTGGTTAACTTTTTGCTTCATACGTTCGGtaccaatct                                                                               >  2:491592/3‑278 (MQ=255)
                                                                                                                                                                                                        ggTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGTTTTTACGACCCCAGTTAACCATGTCATTGAGCTTGTCCATAAACACGTTTTTGTTAACTTCTTGCTCCAGAGGGTCGGTTACGATCTCCTGCtttt                                                                      >  1:73292/1‑288 (MQ=255)
                                                                                                                                                                                                          ccagaCAGACGCTGATTACCATGGTCCATTTGGCTAAACCAAGT‑ACCTCAACCCAACTTCCGGTCACCATGTAGCGGCGCAAG‑ACGCATTACTTCTCCGCCTAAACGCGCCACGTAAATCACCCCGTTAATCGAAGTGACCATCTCAACTTAACGGCTGGAAAGACCGAAGTTATACGGCCAAATTGAGTTTTTACGACCCCAGTTAACCATGTCATTGAGCTTGCCCATATACTCGTTTTTGTTAAGTTCTTGCTCCAGAGGGTCGGTTACGATCTCCTGCGTTTGCa                                                                   <  2:1445436/285‑1 (MQ=255)
                                                                                                                                                                                                           cagaCAGAACCTGAATATCGTGGGGCATTGTGGTAAATCAAGG‑TCCTGCAACCACCCTCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTTCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGTTTTTACGACCCCAGTTAACCATGTCATTGAGCTTGCCCATAAACACGTTTTTGTTAACTTCTTGCTCCAGAGGGTCGGTTACGATCTCCTGCTTTTGCAg                                                                  <  2:842589/286‑1 (MQ=255)
                                                                                                                                                                                                           cATACAGACGCTAAATAACCGGTGCCATTTTAGGAAAGCAGGT‑TCCTGCAACCACCAGCAGGCCAGCCGGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGTTTTTACGACCCCAGTTAACCATGTCATTGAGCTTGCCCATAAACACGTTTTTGTTAACTTCTTGCTCCAGAGGGTCGGTTACGATCTCCTGCTTTTGCa                                                                   <  1:1395757/288‑1 (MQ=255)
                                                                                                                                                                                                            aTACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGTTTTTACGACCCCAGTTAACCATGTCATTGAGCTTGCCCATAAACACGTTTTTGTTAACTTCTTGCTCCAGAGGGTCGGTTACGATCTCCTGCTTTTGCAg                                                                  <  2:1736085/288‑1 (MQ=255)
                                                                                                                                                                                                                 gACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACAGCCAAATTGAGTTTTTACGACCCCAGTTAACCATGTCATTGAGCTTGCCCATAAACACGTTTTTGTTAACTTCTTGCTCCAGAGGGTCGGTTACGATCTCCTGCTTTTGCAGGGGGTa                                                            >  1:974284/1‑289 (MQ=255)
                                                                                                                                                                                                                   cGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGTTTTTACGACCCCAGTTAACCATGTCATTGAGCTTGCCCATAAACACGTTTTTGTTAACTTCTTGCTCCAGAGGGTCGGTTACGATCTCCTGCTTTTGCAGGGGGt                                                             <  1:516196/286‑1 (MQ=255)
                                                                                                                                                                                                                   cGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGTTTTTACGACCCCAGTTAACCATGTCATTGAGCTTGCCCATAAACACGTTTTTGTTAACTTCTTGCTCCAGAGGGTCGGTTACGATCTCCTGCTTTTGCAGGGGGTAAc                                                          >  1:1139925/1‑289 (MQ=255)
                                                                                                                                                                                                                   cGCTGAATAACCGGTGCCATTTTGGGAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGTTTTTACGACCCCAGTTAACCATGTCATTGAGCTTGCCCATAAACACGTTTTTGTTAACTTCTTGCTCCAGAGGGTCGGTTACGATCTCCTGCTTTTGCAGGGGGt                                                             <  2:625234/286‑1 (MQ=255)
                                                                                                                                                                                                                    gCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGTTTTTACGACCCCAGTTAACCATGTCATTGAGCTTGCCCATAAACACGTTTTGGGTAACTTCTTGCTCCAGAGGGTCGGTTACGAGCTCCTGCTTTTGCAGGGGGTAACg                                                         >  1:1596874/1‑289 (MQ=255)
                                                                                                                                                                                                                       gAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCATTACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGTTTTTACGACCCCAGTTAACCATGTCATTGAGCTTGCCCATAAACACGTTTTTGTTAACTTCTTg                                                                                                      >  1:654444/1‑241 (MQ=255)
                                                                                                                                                                                                                       gAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCATTACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGTTTTTACGACCCCAGTTAACCATGTCATTGAGCTTGCCCATAAACACGTTTTTGTTAACTTCTTg                                                                                                      <  2:654444/241‑1 (MQ=255)
                                                                                                                                                                                                                              cGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGTTTTTACGACCCCAGTTAACCATGTCATTGAGCTTGCCCATAAACACGTTTTTGTTAACTTCTTGCTCCAGAGGGTCGGTTACGATCTCCTGCTTTTGCAGGGGGTAACGGTCGTTCTCa                                               <  1:1577511/289‑1 (MQ=255)
                                                                                                                                                                                                                                  gCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGt                                                                                                                                                                                                             <  2:175558/127‑1 (MQ=255)
                                                                                                                                                                                                                                  gCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGTTTTTACGACCCCAGTTAACCATGTCATTGAGCTTGCCCATAAACACGTTTTTGTTAACTTCTTGCTCCAGAGGGTCGGTTACGATCTcc                                                                             >  2:1233092/1‑255 (MQ=255)
                                                                                                                                                                                                                                   ccATTTTGGGGAAGCAGGT‑TGCTGCAACCAGCATCAGGGCAGCCTGACGGGG‑CGAAGGACGCAATACTTCTGCGCCGAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGTTTTTACGACCCCAGATAACCATGTCATTGAGCTTGCCCATAAACACGTTTTTGTTAACTTCTTGCTCCAGAGGGTCGGTTACGATCTCCTGCTTTTGCAGGGGGTAACGGTCGTTCTCACCGt                                           <  2:384794/288‑1 (MQ=255)
                                                                                                                                                                                                                                    cATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGTTTTTACGACCCCAGTTAACCATGTCATTGAGCTTGCCCATAAACACGTTTTTGTTAACTTCTTGCTCCAGAGGGTCGGTTACGATCTCCTGCTTTTGCAGGGGGTAACGGTCGTTCTCACCGtt                                          <  1:417428/288‑1 (MQ=255)
                                                                                                                                                                                                                                      ttttGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGTTTTTACGACCCCAGTTAACCATGTCATTGAGCTTGCCCATAAACACGTTTTTGTTAACTTCTTGCTCCAGAGGGTCGGTTACGATCTCCTGCTTTTGCAGGGGGTAACGGTCGTTCTCACCGTTggg                                       <  1:1173693/289‑1 (MQ=255)
                                                                                                                                                                                                                                      tttgGGTAAAG‑AGGTATCCTGCAAACACCCACCGGTCACGCTGACGCGG‑GGACGCACGCAATACTTCTGAGCAAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGTTTTTACGACCCCAGTTGACCATGTCATTGAGCTTGCCCATAAACACGTTTTTGTTAACTTCTTGCTCCAGAGGGTCGGTTACGTTCTCCTGCTTTTGCAGGGGGTAACGGTCGTTCTCACCGTTggg                                       <  2:1562565/289‑1 (MQ=255)
                                                                                                                                                                                                                                        ttGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGTTTTTACGACCCCAGTTAACCATGTCATTGAGCTTGTCCATAAACACGTTTTTGTTAACTTCTTGCTCCAGAGGGTCGGTTACGATCTCCTGCTTTTGCAGGGGGTAACGGTCGTTCTCACCGTTGGGAt                                     <  2:73292/289‑1 (MQ=255)
                                                                                                                                                                                                                                        ttGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGTTTTTACGACCCCAGTTAACCATGTCATTGAGCTTGCCCATAAACACGTTTTTGTTAACTTCTTGCTCCAGAGGGTCGGTTACGATCTCCTGCTTTTGCAGGGGGTAACGGTCGTTCTCACCGTTGGGAt                                     <  2:1353440/289‑1 (MQ=255)
                                                                                                                                                                                                                                        tgggTAACGGAGGT‑TCCTGCAACCACCATCCGGTACGCCTGACGCGG‑AGAAGCACGCCATACTTGTGCGCCAAAACGCGCCACGTCAAGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGTTTTTACGACCCCAGTTAACCATGTCATTGAGCTTGCCCATAAACACGTTTTTGTTAACTTCTTGCTCCAGATGGTCGGTTACGATCTCCTGCTTTTGCAGGGGGTAACGGTCGTTCTCACCGTTGGGAt                                     <  2:396008/287‑1 (MQ=255)
                                                                                                                                                                                                                                             aaaGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGTTTTTACGACCCCAGTTAACCATGTCATTGAGCTTGCCCATAAACACGTTTTTGTTAACTTCTTGCTCCAGAGGGTCGGTTACGATCTCCTGCTTTTGCAGGGGGTAACGGTCGTTCTCACCGTTGGGATCTATg                                <  1:1826667/289‑1 (MQ=255)
                                                                                                                                                                                                                                                     t‑tCCTGCAACCACCCTCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGTTTTTACGACCCCAGTTAACCATGTCATTGAGCTTGCCCATAAACACGTTTTTGTTAACTTCTTGCTCCAGAGGGTCGGTTACGATCTCCTGCTTTTGCAGGGGGTAACGGTCGTTCTCACCGTTGGGATCTATGCGGGt                           <  1:439807/286‑1 (MQ=255)
                                                                                                                                                                                                                                                     t‑tCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGTTTTTACGACCCCAGTTAACCATGTCATTGAGCTTGCCCATAAACACGTTTTTGTTAACTTCTTGCTCCAGAGGGTCGGTTACGATCTCCTGCTTTTGCAGGGGGTAACGGTCGTTCTCACGGTTGGGATCTATGCGGGttgg                        >  2:1510763/1‑286 (MQ=255)
                                                                                                                                                                                                                                                     t‑tCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGTTTTTACGACCCCAGTTAACCATGTCATTGAGCTTGCCCATAAACACGTTTTTGTTAACTTCTTGCTCCAGAGGGTCGGTTACGATCTCCTGCTTTTGCAGGGGGTAACGGTCGTTCTCACCGTTGGGATCTATGCGGGt                           <  1:377437/286‑1 (MQ=255)
                                                                                                                                                                                                                                                     t‑tCCTGCAACCACCATCAGGTAAGCCTGCCGCGT‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGTTTTTACGACCCCAGTTAACCATGTCATTGAGCTTGCCCATAAACACGTTTTTGTTAACTTCTTGCTCCAGAGGGTCGGTTACGATCTCCTGCTTTTGCAGGGGGTAACGGTCGTTCTCACCGTTGGGATCTATGCGGGTGa                         <  2:974284/288‑1 (MQ=255)
                                                                                                                                                                                                                                                          tGCAACCACCATCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGTTTTTACGACCCCAGTTAACCATGTCATTGAGCTTGCCCATAAACACGTTTTTGTTAACTTCTTGCTCCAGAGGGTCGGTTACGATCTCCTGCTTTTGCAGGGGGTAACGGTCGTTCTCACCGTTGGGATCTATGCGGGTGAGCGta                    >  1:1773116/1‑289 (MQ=255)
                                                                                                                                                                                                                                                          cgccacccccATCAGGTCAGCCCGAGTCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGTTTTTACGACCCCAGTTAACCATGTCATTGAGCTTGCCCATAAACACGTTTTTGTTAACTTCTTGCTCCAGAGGGTCGGTTACGATCTCCTGCTTTTGCAGGGGGTAACGGTCGTTCTCACCGTTGGGATCTATGCGGGTGAGCGta                    <  2:1021963/285‑1 (MQ=255)
                                                                                                                                                                                                                                                               ccaccaTCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGTTTTTACGACCCCAGTTAACCATGTCATTGAGCTTGCCCATAAACACGTTTTTGTTAACTTCTTGCTCCAGAGGGTCGGTTACGATCTCCTGCTTTTGCAGGGGGTAACGGTCGTTCTCACCGTTGGGATCTATGCGGGTGAGCGTATAATc               <  1:331201/289‑1 (MQ=255)
                                                                                                                                                                                                                                                               ccaccaTCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGTTTTTACGACCCCAGTTAACCATGTCATTGAGCTTGCCCATAAACACGTTTTTGTTAACTTCTTGCTCCAGAGGGTCGGTTACGATCTCCTGCTTTTGCAGGGGGTAACGGTCGTTCTCACCGTTGGGATCTATGCGGGTGAGCGTATAATc               <  1:1510763/289‑1 (MQ=255)
                                                                                                                                                                                                                                                               ccaccaTCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGTTTTTACGACCCCAGTTAACCATGTCATTGAGCTTGCCCATAAACACGTTTTTGTTAACTTCTTGCTCCAGAGGGTCGGTTACGATCTCCTGCTTTTGCAGGGGGTAACGGTCGTTCTCACCGTTGGGATCTATGCGGGTGAGCGTATAATc               <  2:1615412/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                   caTCAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTCAGTCTTTACGACCCCAGTTAACCATGTCATTGAGCTCGCCCATAAACACGTTTTTGTTAACTTCTTGCTCCAGAGGGTCGGTTACCATCTCCTGCCTTTGCGGTGGGTTACGGTCGTTCTCACCGCTGGGATCCATTGGGGTGCGCGgatagacca             >  2:1083381/1‑282 (MQ=255)
                                                                                                                                                                                                                                                                      cAGGTCAGCCTGACGCGG‑CGAAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAACGAAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATTGAGTTTTTACGACCCCAGTTAACCATGTCATTGAGCTTGCCCATAAACACGTTTTTGTTAACTTCTTGCTCCAGAGGGTCGGTTACGATCTCCTGCTTTTGCAGGGGGTAACGGTCGTTCTCACCGTTGGGATCTATGCGGGTGAGCGTATAATCCATCTTa        <  1:121151/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                                         |||                                                                                                                                                                                                                                                                                  
CGGACGACGTTCTTTGCCGATAGATTCCTGCAACAGCATCAGTGCCTGCATGTACGCTTCAGGACGCGGCGGGCAGCCCGGGATATACACATCAACCGGGATGAATTTATCGACGCCCTGCACAACGGAATAAATATCGTACATACCACCAGAGTTGGCACAGGCACCCATACTGATAACCCATTTTGGTTCCAGCATCTGGTCATACAGACGCTGAATAACCGGTGCCATTTTGGTAAAGCAGGT‑TCCTGCAACCACCATCAGGTCAGCCTGACGCGG‑GCTAGCACGCAATACTTCTGCGCCAAAACGCGCCACGTCATGCACCGCGGTAAAGCTAGTCACCATCTCAACGTAACAGCAGGAAAGACCGAAGTTATACGGCCAAATACTGTTTTTACGACCCCAGTTAACCATGTCATTGAGCTTGCCCATAAACACGTTTTTGTTAACTTCTTGCTCCAGAGGGTCGGTTACGATCTCCTGCTTTTGCAGGGGGTAACGGTCGTTCTCACCGTTGGGATCTATGCGGGTGAGCGTATAATCCATCTTAATGCCT  >  CP042583/1975356‑1975911

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A