Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F210 I1 R1 4928 368.7 6392010 97.5% 6232209 231.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,468,278 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,468,2780GC98.5% 932.9 / ‑4.6 406intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (3/3);  new base C (206/192);  total (211/195)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.90e-01
*CP0425831,468,2790CG98.5% 933.1 / 9.9 406intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (2/0);  major base G (205/192);  minor base . (3/3);  total (211/195)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.71e-01
*CP0425831,468,2800TA99.2% 946.6 / NA 406intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (1/1);  major base A (208/190);  minor base G (0/3);  total (211/195)
Fisher's exact test for biased strand distribution p-value = 1.11e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

Only 100 of 406 total aligned reads displayed.

ACTATGCAGCGTATAACGCTCCATGACCTGACCGCGACTGCGCACGGTTTCCGGACGCGCCTGCACAATGAACAGTTTACCGGTGTGGCCATCTTTCGCCCACTCAATATCCATCGGGCGACCGTAGTGTTTCTCAATTTGTACGGCCTGTTTTGCCA‑GTTCCTGCACTTCTTCGTTGGTCAGGCTG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTGCTCCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCACGACCATCTCACCAAGGCCCCATGCGGAAGTGATAAACACCACCTGGTCAAAGCCGGATTCGGTATCAATGGAGAACATCACGCCAGAACTTGCGAGGTCAGAGCGCACCATCCGTTGAACACCGGCGGAGAGCGCCACACCACGGTGATCGTAACCCTGGTGCACACGATAAGAGATGGCGCGA  >  CP042583/1468002‑1468554
                                                                                                                                                                                                                                                                                        |||                                                                                                                                                                                                                                                                                  
tgaaTGCAGCGTATAACGCTCCATGACCTGACCGCGTGAGCGCACGGTTTCCGGACGCGCCTGCACAATGAACAGTTTACCGGTGTGGCCATCTTTCGCCCACTCAATATCCATCGGGCGACCGTAGTGTTTCTCAATTTGTACGGCCTGTTTTGCCA‑GTTCCTGCACTTCTTCGTTGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGCTTTTTTTCGACCCCATGGt                                                                                                                                                                                                                                                                           >  1:2557325/4‑288 (MQ=255)
tgaaTGCAGCGTATAACGCTCCATGACCTGACCGCGTGAGCGCACGGTTTCCGGACGCGCCTGCACAATGAACAGTTTACCGGTGTGGCCATCTTTCGCCCACTCAATATCCATCGGGCGACCGTAGTGTTTCTCAATTTGTACGGCCTGTTTTGCCA‑GTTCCTGCACTTCTTCGTTGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGtc                                                                                                                                                                                                                                                                          >  1:559826/4‑288 (MQ=255)
gaaaTGCCGCGTATAACGCCCCATGACCTGACCGCGTGAGCGCCCGGTTTCCGGACGCGCCTGCACAATGAACAGTTTACCGGTGTGGCCATCTTTCGCCCACTCAATATCCATCGGGCGACCGTAGTGTTTCTCAATTTGTACGGCCTGTTTTGCCA‑GTTCCTGCACTTCTTCGTTGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTg                                                                                                                                                                                                                                                                          <  2:107342/286‑1 (MQ=255)
         cGTATAACGCTCCATGACCTGACCGCGTGAGCGCACGGTTTCCGGACGCGCCTGCACAATGAACAGTTTACCGGTGTGGCCATCTTTCGCCCACTCAATATCCATCGGGCGACCGTAGTGTTTCTCAATTTGTACGGCCTGTTTTGCCA‑GTTCCTGCACTTCTTCGTTGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTTCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTTCCGCGCCCg                                                                                                                                                                                                                                                                 >  2:3130971/1‑289 (MQ=255)
         cGTATAACGCTCCATGACCTGACCGCGTGAGCGCACGGTTTCCGGACGCGCCTGCACAATGAACAGTTTACCGGTGTGGCCATCTTTCGCCCACTCAATATCCATCGGGCGACCGTAGTGTTTCTCAATTTGTACGGCCTGTTTTGCCA‑GTTCCTGCACTTCTTCGTTGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACg                                                                                                                                                                                                                                                                 >  1:628133/1‑289 (MQ=255)
          gTATAACGCTCCATGACCTGACCGCGTGAGCGCACGGTTTCCGGACGCGCCTGCACAATGAACAGTTTACCGGTGTGGCCATCTTTCGCCCACTCAATATCCATCGGGCGACCGTAGTGTTTCTCAATTTGTACGGCCTGTTTTGCCA‑GTTCCTGCACTTCTTCGTTGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGa                                                                                                                                                                                                                                                                >  1:3120590/1‑289 (MQ=255)
                              accgcgtgagcgcACGGTTTCCGGACGCGCCTGCACAATGAACAGTTTACCGGTGTGGCCATCTTTCGCCCACTCAATATCCATCGGGCGACCGTAGTGTTTCTCAATTTGTACGGCCTGTTTTGCCA‑GTTCCTGCACTTCTTCGTTGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGCCCCCATGGTGCGGCGCACGATCGCCGGGCGATTcgcccc                                                                                                                                                                                                                                             >  2:2299095/10‑286 (MQ=255)
                               ccgcgtgagcgcACGGTTTCCGGACGCGCCTGCACAATGAACAGTTTACCGGTGTGGCCATCTTTCGCCCACTCAATATCCATCGGGCGACCGTAGTGTTTCTCAATTTGTACGGCCTGTTTTGCCA‑GTTCCTGCACTTCTTCGTTGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGTCGCACGATAGCCGGGCGATTCGCCGCCa                                                                                                                                                                                                                                           >  1:2313381/9‑289 (MQ=255)
                               ccgcgtgagcgcACGGTTTCCGGACGCGCCTGCACAATGAACAGTTTACCGGTGTGGCCATCTTTCGCCCACTCAATATCCATCGGGCGACCGTAGTGTTTCTCAATTTGTACGGCCTGTTTTGCCA‑GTTCCTGCACTTCTTCGTTGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCa                                                                                                                                                                                                                                           >  1:784740/9‑289 (MQ=255)
                               ccgcgtgagcgcACGGTTTCCGGACGCGCCTGCACAATGAACAGTTTACCGGTGTGGCCATCTTTCGCCCACTCAATATCCATCGGGCGACCGTAGTGTTTCTCAATTTGTACGGCCTGTTTTGCCA‑GTTCCTGCACTTCTTCGTTGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCa                                                                                                                                                                                                                                           >  1:1742814/9‑289 (MQ=255)
                                   gtgagcgcACGGTTTCCGGACGCGCCTGCACAATGAACAGTTTACCGGTGTGGCCATCTTTCGCCCACTCAATATCCATCGGGCGACCGTAGTGTTTCTCAATTTGTACGGCCTGTTTTGCCA‑GTTCCTGCACTTCTTCGTTGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAgtg                                                                                                                                                                                                                                        <  1:3073818/284‑1 (MQ=255)
                                        cgcACGGTTTCCGGACGCGCCTGCACAATGAACAGTTTACCGGTGTGGCCATCTTTCGCCCACTCAATATCCATCGGGCGACCGTAGTGTTTCTCAATTTGTACGGCCTGTTTTGCCA‑GTTCCTGCACTTCTTCGTTGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTcgccgc                                                                                                                                                                                                                                             <  1:987540/278‑1 (MQ=255)
                                                         cgcCTGCACAATGAACAGTTTACCGGTGTGGCCATCTTTCGCCCACTCAATATCCATCGGGCGACCGTAGTGTTTCTCAATTTGTACGGCCTGTTTTGCCA‑GTTCCTGCACTTCTTCGTTGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCCGTGTCGGTTTATGCACGTAAAACTc                                                                                                                                                                                                                  >  2:2660993/1‑288 (MQ=255)
                                                         cgcCTGCACAATGAACAGTTTACCGGTGTGGCCATCTTTCGCCCACTCAATATCCATCGGGCGACCGTAGTGTTTCTCAATTTGTACGGCCTGTTTTGCCA‑GTTCCTGCACTTCTTCGTTGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGt                                                                                                                                                                                                                         >  1:660643/1‑281 (MQ=255)
                                                           ccTACAAAATGAACAGGTTGCCGGTGTGGCCATCTTTGGCCACCTCCATGTCCATCGGGCGACCTTAGTGTTTCTCAATTTGTCCGGCCTGTTTTGCCA‑GTTCCTGCACTTCTTCGTTGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATc                                                                                                                                                                                                               <  2:2518473/289‑1 (MQ=255)
                                                                ccaATGAACCGTTTACCGGTGTGCCCATCTTTCGCCCCTTCATTATCCATCGGGCGACCGTAGTGTTTCTCAATTTGTACGGCCTGTTTTGCCA‑GTTCCTGCACTTCTTCGTTGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGt                                                                                                                                                                                                          <  2:1742814/288‑1 (MQ=255)
                                                                acaATGAAGAGTTGACCGGTGTTGCCATCTTTCGCCCACTCAATTTCCATCGGTCGACCGTAGTGTTTCTCAATTAGTACGGCCTGTTTTGCCA‑GTTCCTGCACTGCTTCGTTGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCAGTACGTCTTCGATTTTAGCCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGCGTCGGTTTATGCACGTAAAACTCATCCGGGt                                                                                                                                                                                                          <  2:2430766/289‑1 (MQ=255)
                                                                    tGAACAGTTTACCGGTGTGGCCATCTTTCGCCCACTCAATATCCATCGGGCGACCGTAGTGTTTCTCAATTTGTACGGCCTGTTTTGCCA‑GTTCCTGCACTTCTTCGTTGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTgcggc                                                                                                                                                                                                                                                                      <  1:1678311/225‑1 (MQ=255)
                                                                    tGAACAGTTTACCGGTGTGGCCATCTTTCGCCCACTCAATATCCATCGGGCGACCGTAGTGTTTCTCAATTTGTACGGCCTGTTTTGCCA‑GTTCCTGCACTTCTTCGTTGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAAATCATCCGGGTTaa                                                                                                                                                                                                       >  1:1560814/1‑288 (MQ=255)
                                                                              aCCGGTGTGGCCATCTTTCGCCCACTCAATATCCATCGGGCGACCGTAGTGTTTCTCAATTTGTACGGCCTGTTTTGCCA‑GTTCCTGCACTTCTTCGTTGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTgcgg                                                                                                                                                                                                                                                                       <  2:3108390/214‑1 (MQ=255)
                                                                              aCCGGTGTGGCCATCTTTCGCCCACTCAATATCCATCGGGCGACCGTAGTGTTTCTCAATTTGTACGGCCTGTTTTGCCA‑GTTCCTGCACTTCTTCGTTGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTgcgg                                                                                                                                                                                                                                                                       >  1:3108390/1‑214 (MQ=255)
                                                                                     tgGCCATCTTTCGCCCACTCAATATCCATCGGGCGACCGTAGTGTTTCTCAATTTGTACGGCCTGTTTTGCCA‑GTTCCTGCACTTCTTCGTTGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCACGAcc                                                                                                                                                                                      >  2:1969930/1‑288 (MQ=255)
                                                                                     tgGCCATCTTTCGCCCACTCAATATCCATCGGGCGACCGTAGTGTTTCTCAATTTGTACGGCCTGTTTTGCCA‑GTTCCTGCACTTCTTCGTTGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCACGACCa                                                                                                                                                                                     >  1:481139/1‑289 (MQ=255)
                                                                                      ggCCATCTTTCGCCCACTCAATATCCATCGGGCGACCGTAGTGTTTCTCAATTTGTACGGCCTGTTTTGCCA‑GTTCCTGCACTTCTTCGTTGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCACGACCAt                                                                                                                                                                                    <  2:627315/289‑1 (MQ=255)
                                                                                       gCCATCTTTCGCCCACTCAATATCCATCGGGCGACCGTAGTGTTTCTCAATTTGTACGGCCTGTTTTGCCA‑GTTCCTGCACTTCTTCGTTGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCTGGGTTAACCGCACCCTGCACGACCa                                                                                                                                                                                     >  1:2253517/1‑287 (MQ=255)
                                                                                          aTCTTTCGCCCACTCAATATCCATCGGGCGACCGTAGTGTTTCTCAATTTGTACGGCCTGTTTTGCCA‑GTTCCTGCACTTCTTCGTTGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTTCGGCGCACGATAGCCGGGCGATTCGCCGCCAGGGTCGGGTTATGCCCGTAAAACCCATCCGGGTTAACCGCACCCTGCACGccctgctc                                                                                                                                                                                 >  2:2353909/1‑283 (MQ=255)
                                                                                            cTTTCGCCCACTCAATATCCATCGGGCGACCGTAGTGTTTCTCAATTTGTACGGCCTGTTTTGCCA‑GTTCCTGCACTTCTTCGTTGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGt                                                                                                                                                                                                                                   >  2:749356/1‑236 (MQ=255)
                                                                                            cTTTCGCCCACTCAATATCCATCGGGCGACCGTAGTGTTTCTCAATTTGTACGGCCTGTTTTGCCA‑GTTCCTGCACTTCTTCGTTGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGt                                                                                                                                                                                                          >  1:2656758/1‑261 (MQ=255)
                                                                                             tttCGCCCACTCAATATCCATCGGGCGACCGTAGTGTTTCTCAATTTGTACGGCCTGTTTTGCCA‑GTTCCTGCACTTCTTCGTTGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGGAAAACTCATCCGGGTTCACCGCAACCTTGACGACCATCTCACCa                                                                                                                                                                             >  1:850494/1‑289 (MQ=255)
                                                                                                  cccACTCAATATCCATCGGGCGACCGTAGTGTTTCTCAATTTGTACGGCCTGTTTTGCCA‑GTTCCTGCACTTCTTCGTTGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCACGAc                                                                                                                                                                                       <  2:1223073/274‑1 (MQ=255)
                                                                                                  cccACTCAATATCCATCGGGCGACCGTAGTGTTTCTCAATTTGTACGGCCTGTTTTGCCA‑GTTCCTGCACTTCTTCGTTGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCACGACCATCTCACCAAGGcc                                                                                                                                                                        <  2:481139/289‑1 (MQ=255)
                                                                                                      cTCAATATCCATCGGGCGACCGTAGTGTTTCTCAATTTGTACGGCCTGTTTTGCCA‑GTTCCTGCACTTCTTCGTTGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCGGCACGACCATCTCACCAAGGCCCCa                                                                                                                                                                     >  2:164290/1‑288 (MQ=255)
                                                                                                                aTCGGGCGACCGTAGTGTTTCTCAATTTGTACGGCCTGTTTTGCCA‑GTTCCTGCACTTCTTCGTTGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCACGACCATCTCACCAAGGCCCCATGCGGAAGTGa                                                                                                                                                          >  1:1340795/1‑289 (MQ=255)
                                                                                                                 tCGGGCGACCGTAGTGTTTCTCAATTTGTACGGCCTGTTTTGCCA‑GTTCCTGCACTTCTTCGTTGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCGGCGCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCgg                                                                                                                                                                                                            <  2:1373566/240‑1 (MQ=255)
                                                                                                                 tCGGGCGACCGTAGTGTTTCTCAATTTGTACGGCCTGTTTTGCCA‑GTTCCTGCACTTCTTCGTTGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTcgccgc                                                                                                                                                                                                                                             >  1:1972024/1‑205 (MQ=255)
                                                                                                                 tCGGGCGACCGTAGTGTTTCTCAATTTGTACGGCCTGTTTTGCCA‑GTTCCTGCACTTCTTCGTTGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCa                                                                                                                                                                                                  >  2:1109575/1‑248 (MQ=255)
                                                                                                                 tCGGGCGACCGTAGTGTTTCTCAATTTGTACGGCCTGTTTTGCCA‑GTTCCTGCACTTCTTCGTTGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCACGACCATCTCACCAAGGCCCCATGCGGAAGTGAt                                                                                                                                                         >  2:597520/1‑289 (MQ=255)
                                                                                                                 tCGGGCGACCGTAGTGTTTCTCAATTTGTACGGCCTGTTTTGCCA‑GTTCCTGCACTTCTTCGTTGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCACGACCATCTCACCAAGGCCCCATGCGGAAGTGAt                                                                                                                                                         >  1:1092352/1‑289 (MQ=255)
                                                                                                                   gggCGACCGTAGTGTTTCTCAATTTGTACGGCCTGTTTTGCCA‑GTTCCTGCACTTCTTCGTTGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCACGACCCTCTCACCAAGGCCCCATGCGGAAGTGATaa                                                                                                                                                       >  2:2778152/1‑289 (MQ=255)
                                                                                                                   gggCGACCGTAGTGTTTCTCAATTTGTACGGCCTGTTTTGCCA‑GTTCCTGCACTTCTTCGTTGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCACGACCATCTCACCAAGGcc                                                                                                                                                                        <  2:2202585/272‑1 (MQ=255)
                                                                                                                     tcgtccttgttgtTTCTCAATTTGTGCGTCCTGTTTTTCCA‑GTTCCTCCACTCTTTCGTTTGTCATGGAG‑AAGATGTCCCGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCACGACCATCTCACCAAGGCCCCATGCGGAAGTGATaaa                                                                                                                                                      <  2:246911/278‑1 (MQ=255)
                                                                                                                      cGACCGTAGTGTTTCTCAATTTGTACGGCCTGTTTTGCCA‑GTTCCTGCACTTCTTCGTTGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCACGACCATCTCACCAAGGCCCCATGCGGAAGTGATAAac                                                                                                                                                     <  1:800083/288‑1 (MQ=255)
                                                                                                                        aCCGTAGTGTTTCTCAATTTGTACGGCCTGTTTTGCCA‑GTTCCTGCACTTCTTCGTTGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCACGACCATCTCACCaa                                                                                                                                                                            >  1:606587/1‑263 (MQ=255)
                                                                                                                                   tctcAATTTGTACGGCCTGTTTTGCCA‑GTTCCTGCACTTCTTCGTTGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGTGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCACGACCATCTCTCCAAGGCCCCATGCGGAAGTGATAAACCACACCTGGTCcaa                                                                                                                                       >  1:1013783/1‑289 (MQ=255)
                                                                                                                                   tctcAATTTGTACGGCCTGTTTTGCCA‑GTTCCTGCACTTCTTCGTTGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTAt                                                                                                                                                                                                                               <  2:2951815/201‑1 (MQ=255)
                                                                                                                                    ctcAATTTGTACGGCCTGTTTTGCCA‑GTTCCTGCACTTCTTCGTTGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTgcggcg                                                                                                                                                                                                                                                                     >  2:334406/1‑162 (MQ=255)
                                                                                                                                    ctcAATTTGTACGGCCTGTTTTGCCA‑GTTCCTGCACTTCTTCGTTGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCa                                                                                                                                                                                                  <  2:1994747/229‑1 (MQ=255)
                                                                                                                                    ctcAATTTGTACGGCCTGTTTTGCCA‑GTTCCTGCACTTCTTCGTTGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCACGACCATCTCACCAAGGCCCCATGCGGAAGTGATAAACACCACCTGGTCAAAg                                                                                                                                      <  1:2778152/289‑1 (MQ=255)
                                                                                                                                       aaTTTGTACGGCCTGTTTTGCCA‑GTTCCTGCACTTCTTCGTTGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTAt                                                                                                                                                                                                                               >  1:748429/1‑197 (MQ=255)
                                                                                                                                       aaTTTGTACGGCCTGTTTTGCCA‑GTTCCTGCACTTCTTCGTTGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCACGACCATCTCACCAAGGCCCCATGCGGaa                                                                                                                                                              <  1:2464581/262‑1 (MQ=255)
                                                                                                                                        aTTTGTACGGCCTGTTTTGCCA‑GTTCCTGCACTTCTTCGTTGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTgcgg                                                                                                                                                                                                                                                                       <  1:721140/156‑1 (MQ=255)
                                                                                                                                        aTTTGTACGGCCTGTTTTGCCA‑GTTCCTGCACTTCTTCGTTGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTgcgg                                                                                                                                                                                                                                                                       >  2:721140/1‑156 (MQ=255)
                                                                                                                                           tgtgctgctttttttGCCA‑GTTCCTGCCCTTCTTCGTTGGTCCGCGTG‑AAGATGCTCCGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGAACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCTGGGTTAACCGCACCCTGCACGACCATCTCACCAAGGCCCCATGCGGAAGTGATAAACACCACCTGGTCAAAGCCGGAtt                                                                                                                               <  2:2253517/278‑1 (MQ=255)
                                                                                                                                               cGGCCTGTTTTGCCA‑GTTCCTGCACTTCTTCGTTGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCACGACCATCTCACCAAGGCCCCATGCGGAAGTGATAAACACCACCTGGTCAAAGCCGGATTCGGt                                                                                                                           <  2:1340795/289‑1 (MQ=255)
                                                                                                                                                  gcTGTTTTGCCACGTGCTTGCCATCCTGCGTCGGTC‑GGCAGAAAGATGTCTGCCTATCCCTGCGGTACGTCTTCGATTTTAACCTGGTGGCCGGGTCCCTGGGTCG‑‑GCGCGTAAACCAGGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCACGACCATCTCACCAAGGCCCCATGCGGAAGTGATAAACACCACCTGGTCAAAGCCGGATTCGGTAt                                                                                                                         <  2:559826/288‑1 (MQ=255)
                                                                                                                                                   cTGTTTTGCCA‑GTTCCTGCACTTCTTCGTTGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCACGACCATCTCACCAAGGCCCCAt                                                                                                                                                                    >  2:1667498/1‑244 (MQ=255)
                                                                                                                                                   cTGTTTTGCCA‑GTTCCTGCACTTCTTCGTTGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCACGACCATCTCACCAAGGCCCCATGCGGAAGTGATAAACACCACCTGGTCAAAGCCGGATTCGGTATCa                                                                                                                       <  1:2036773/289‑1 (MQ=255)
                                                                                                                                                   cTGTTTTGCCA‑GTTCCTGCACTTCTTCGTTGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCACGACCATCTCACCAAGGCCCCATGCGGAAGTGATAAACACCACCTGGTCAAAGCCGGATTCGGTATCa                                                                                                                       <  1:1819398/289‑1 (MQ=255)
                                                                                                                                                       tttGCCG‑GTTCCTGCACTTCTGCGTTGGTCAGCGGG‑AGGATGTCAGGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCACGACCATCTCACCAAGGCCCCATGCGGAAGTGATAAACACCACCTGGTCAAAGCCGGATTCGGTATCAATg                                                                                                                    <  2:784740/288‑1 (MQ=255)
                                                                                                                                                                ttCCTGCACTTCTTCGTTGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCACGACCATCTCACCAAGGCCCCATGCGGAAGTGa                                                                                                                                                          <  2:2560485/242‑1 (MQ=255)
                                                                                                                                                                 tCCTGCACTTCTTCGTTGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCa                                                                                                                                                                                                  <  1:1205392/201‑1 (MQ=255)
                                                                                                                                                                 tCCTGCACTTCTTCGTTGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCa                                                                                                                                                                                                  >  2:1205392/1‑201 (MQ=255)
                                                                                                                                                                 tCCTGCACTTCTTCGTTGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCACGACCATCTCACCAAGGCCCCATGCGGAAGTGAt                                                                                                                                                         <  2:648574/242‑1 (MQ=255)
                                                                                                                                                                 tCCTGCACTTCTTCGTTGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCACGACCATCTCACCAAGGCCCCATGCGGAAGTGATAAAcaccac                                                                                                                                                <  2:2132687/251‑1 (MQ=255)
                                                                                                                                                                                ttGGTCAGCGAG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCACGACCATCTCACCAAGGCCCCATGCGGAAGTGa                                                                                                                                                          >  1:2206555/1‑226 (MQ=255)
                                                                                                                                                                                    tcagcgag‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCACGACCATCTCACCAAGGCCCCATGCGGAAGTGATAAACACCACCTGGTCAAAGCCGGATTCGGTATCAATGGAGAACATCACGCCAGATGATGCGAGGt                                                                                        <  1:1596430/281‑1 (MQ=255)
                                                                                                                                                                                     cagcgag‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCACGACCATCTCACCAAGGCCCCATGCGGaa                                                                                                                                                              >  1:2831718/7‑217 (MQ=255)
                                                                                                                                                                                     cagcgag‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCACGACCATCTCACCAAGGCCCCATGCGGAAGTGATAAACACCACCTGGTCACAGCCGGACTCGGTATCAATGGAGAACATCACGCCAGATGACGCGAGGTcg                                                                                      >  2:927520/7‑288 (MQ=255)
                                                                                                                                                                                                ttctgggccggTTCCTGCGGTACGTCTCCGTGTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GGTCGTAAACCATGCGGATTTTTTTCGGCCCCAGGGGGCGGCGGACGATAACCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCACGACCATCTCACCAAGGCCCCATGCGGAAGTGATAAACACCACCTGGTCAAAGCCGGATTCGGTATCAATGGAGAACATCACGCCAGATGATGCGAGGTCAGAGCGCAcc                                                                             <  2:82190/278‑1 (MQ=255)
                                                                                                                                                                                                   tCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCACGACCATCTCACCAAGGCCCCATGCGGAAGTGATAAaca                                                                                                                                                    >  1:1132860/1‑214 (MQ=255)
                                                                                                                                                                                                       gCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCACGACCATCTCACCAAGGCCCCATGCGGAAGTGATAAACACCACCTGGTCAAAGCCGGATTCGGTATCAATGGAGAACATCACGCCAGATGATGCGAGGTCAGAGCGCACCATCCGTTg                                                                     <  1:2089418/289‑1 (MQ=255)
                                                                                                                                                                                                         tgtgCCTTCGGTCCGTCTTGGGTTTTACCCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCACGACCATCTCACCAAGGCCCCATGCGGAAGTGATAAACACCACCTGGTCAAAGCCGGATTCGGTATCAATGGAGAACATCACGCCAGATGATGCGAGGTCAGAGCGCACCATCCGTTGaa                                                                   <  2:2719411/289‑1 (MQ=255)
                                                                                                                                                                                                             ccTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCACGACCATCTCACCAAGGCCCCATGCGGAAGTGATAAACACCACCTGGTCAAAGCCGGATTCGGTATCAATGGAGAACATCACGCCAGATGATGCGAGGTCAGAGCGCACCATCCGTTGAacac                                                                >  2:2047581/1‑288 (MQ=255)
                                                                                                                                                                                                                     aCGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCa                                                                                                                                                                                                  >  2:1902478/1‑150 (MQ=255)
                                                                                                                                                                                                                     aCGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCAc                                                                                                                                                                                          >  2:2841229/1‑158 (MQ=255)
                                                                                                                                                                                                                     aCGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCACGACCATCTCACCAAGGCCCCATGCGGAAGTGATAAACACCACCTGGTCAAAGCCGGATTCGGt                                                                                                                           <  2:3059151/221‑1 (MQ=255)
                                                                                                                                                                                                                     aCGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCACGACCATCTCACCAAGGCCCCATGCGGAAGTGATAAACACCACCTGGTCAAAGCCGGATTCGGTATCAATGGAGAACATCACGCCAGATGATGCGAGGTCa                                                                                      >  1:3186351/1‑258 (MQ=255)
                                                                                                                                                                                                                     aCGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCACGACCATCTCACCAAGGCCCCATGCGGAAGTGATAAACACCACCTGGTCAAAGCCGGATTCGGTATCAATGGAGAACATCACGCCAGATGATGCGAGGTCAGAGCGCACCATCCGTTGAACACCGGCGgaga                                                       >  1:2359081/1‑289 (MQ=255)
                                                                                                                                                                                                                     aCGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCACGACCATCTCACCAAGGCCCCATGCGGAAGTGATAAACACCACCTGGTCAAAGCCGGATTCGGTATCAATGGAGAACATCACGCCAGATGATGCGAGGTCAGAGCGCACCATCCGTTGAACACCGGCGgaga                                                       >  1:130171/1‑289 (MQ=255)
                                                                                                                                                                                                                     aCGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTCG‑ACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCACGACCATCTCACCAAGGCCCCATGCGGAAGTGATAAACACCACCTGGTCAAAGCCGGATTCGGTATCAATGgag                                                                                                                 >  1:2716332/1‑230 (MQ=255)
                                                                                                                                                                                                                         cTTCGATTTTATCCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCACGACCATCTCACCAAGGCCCCATGCGGAAGTGATAAACACCACCTGGTCAAAGCCGGATTCGGTATCAATGGAGAACATCACGCCAGATGATGCGAGGTCAGAGCGCACCATCCGTTGAACACCGGCGGAGAgcgc                                                   <  1:2501175/289‑1 (MQ=255)
                                                                                                                                                                                                                           tCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCACGACCATCTCACCAAGGCCCCATGCGGAAGTGATAAACACCACCTGGTCAAAGCCGGATTCGGTATCAATGGAGAACATCACGCCAGATGATGCGAGGTCAGAGCGCACCATCCGTTGAACACCGGCGGAGAGCGcc                                                  >  1:434884/1‑288 (MQ=255)
                                                                                                                                                                                                                            cGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCACGACCATCTCACCAAGGCCCCATGCGGAAGTGATAAACACCACCTGGTCAAAGCCGGATTCGGTATCAATGGAGAACATCACGCCAGATGATGCGAGGTCaga                                                                                    <  1:376792/253‑1 (MQ=255)
                                                                                                                                                                                                                                  tatccTGCTTGCCTGTCTGCTGTGTCG‑‑GCGCGGAAACCATGGGGATTTTTCTCGACCCCTTGGTGCGGCGCACGATATCCGGGCGATTGGCCGCCAGGGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCTCGACCATCTAACCAAGGCCCCATGCGGAAGTGATAAACACCACCTGGTCAAAGCCGGATTCGGTATCAATGGAGAACATCGCGCCAGATGATGCGAGGTCAGAGCGCACCATCCGTTGAACACCGGCGGAGAGCGCCACACCACg                                          <  2:130171/286‑1 (MQ=255)
                                                                                                                                                                                                                                       gcgttgcggggatCCTGGGTGG‑‑GCGCGTAAACCATGCGGATTTTTTTCGGCCCCATGGTGCGGGGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCACGACCATCTCACCAAGGCCCCATGCGGAAGTGATAAACACCACCTGGTCAAAGCCGGATTCGGTATCAATGGAGAACATCACGCCAGATGATGCGAGGTCAGAGCGCACCATCCGTTGAACACCGGCGGAGAGCGCCACACCACGGTGAt                                     <  2:431316/277‑1 (MQ=255)
                                                                                                                                                                                                                                          ttGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCACGACCATCTCACCAAGGCCCCATGCGGAAGTGATAAACACCACCTGGTCAAAGCCGGATTCGGTATCAATGGAGAACATCACGCCAGATGATGCGAGGTCAGAGCGCACCATCCGTTGAACACCGGCGGAGAGCGCCACACCACGGTGATCg                                   <  1:1660830/288‑1 (MQ=255)
                                                                                                                                                                                                                                                  cTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCACGACCATCTCACCAAGGCCCCATGCGGAAGTGATAAACACCACCTGGTCAAAGCCGGa                                                                                                                                 <  1:2913699/186‑1 (MQ=255)
                                                                                                                                                                                                                                                     cTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCACGACCATCTCACCAAGGCCCCATGCGGAAGTGATAAACACCACCTGGTCAAAGCCGGATTCGGTATCAATGGAGAACATCACGCCAGATGATGCGAGGTCAGAGCGCAcc                                                                             <  1:2413755/235‑1 (MQ=255)
                                                                                                                                                                                                                                                      tGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCACGACCATCTCACCAAGGCCCCATGCGGAAGTGATAAACACCACCTGGTCAAAGCCGGATTCGGTATCAATGGAGAACATCACGCCAGATGATGCGAGGTCAGAGCGCACCATCCGTTGAACACCGGCGGAGAGCGCCACACCACGGTGATCGTAACCCTGGTGca                      <  2:1414547/289‑1 (MQ=255)
                                                                                                                                                                                                                                                      tGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCACGACCATCTCACCAAGGCCCCATGCGGAAGTGATAAACACCACCTGGTCAAAGCCGGATTCGGTATCAATGGAGAACATCACGCCAGATGATGCGAGGTCAGAGCGCACCATCCGTTGAACACCGGCGGAGAGCGCCACACCACGGTGATCGTAACCCTGGTGca                      <  1:1905280/289‑1 (MQ=255)
                                                                                                                                                                                                                                                         gtgtgcgcgcGTAAGCCGTGCGGCGTTTTTTCGCGCCAATTGTGGGGCGGACGATAGCAGGGGGATTCGCCGCCGGGGTCGGTTTATGCACGTAAAACTCAGCCGGGTTAACCGCACCCTGCACGACCATCTCACCACGGCCCCATGCGGAAGTGATAAACACCACCTGGTCAAAGCCGGATTCGGTATCAATGGAGAACATCACGCCAGATGATGCGAGGTCAGAGCGCACCATCCGTTGAACACCGGCGGAGAGCGCCACACCACGGTGATCGTAACCCTGGTGca                      <  2:1710251/282‑1 (MQ=255)
                                                                                                                                                                                                                                                         gTCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCACGACCATCTCACCAAGGCCCCATGCGGAAGTGATAAACACCACCTGGTCAAAGCCGGATTCGGTATCAATGGAGAACATCACGCCAGATGATGCGAGGTCAGAGCGCACCATCCGTTGAACACCGGCGGAGAGCGCCACACCACGGTGATCGTAACCCTGGTGcaca                    <  1:216560/288‑1 (MQ=255)
                                                                                                                                                                                                                                                          tCG‑‑GCGCGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCACGACCATCTCACCAAGGCCCCATGCGGAAGTGATAAACACCACCTGGTCAAAGCCGGATTCGGTATCAATGGAGAACATCACGCCAGATGATGCGAGGTCAGAGCGCACCATCCGTTGAACACCGGCGGAGAGCGCcac                                                <  1:1714043/259‑1 (MQ=255)
                                                                                                                                                                                                                                                               gcgcGTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCACGACCATCTCACCAAGGCCCCATGCGGAAGTGATAAACACCACCTGGTCAAAGCCGGATTCGGTATCAATGGAGAACATCACGCCAGATGATGCGAGGTCAGAGCGCACCATCCGTTGAACACCGGCGGAGAGCGCCACACCACGGTGATCGTAACCCTGGTGCACACGATa               >  1:1498531/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                cgcgTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCACGACCATCTCACCAAGGCCCCATGCGGAAGTGATAAACACCACCTGGTCAAAGCCGGATTCGGTAt                                                                                                                         >  2:1585194/1‑182 (MQ=255)
                                                                                                                                                                                                                                                                 gcgTAATCCATGCGGATTTTTGTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCACGACCATCTCACCAAGGCCCCATGCGGAAGTGATAAACACCACCTGGTCAAAGCCGGATTCGGTATCAATGGAGAACATCACGCCAGATGATGCGAGGTCAGAGCGCACCATCCGTTGAACACCGGCGGAGAGCGCCACACCACGGTGATCGTAACCCTGGTGCACACGATAag             <  1:3016345/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                 gcgTAAACCATGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCACGACCATCTCACCAAGGCCCCATGCGGAAGTGATAAACACCACCTGGTCAAAGCCGGATTCGGTATCAATGGAGAACATCACGCCAGATGATGCGAGGTCAGAGCGCACCATCCGTTGAACACCGGCGGAGAGCGCCACACCACGGTGATCGTAACCCTg                           >  1:1236607/1‑275 (MQ=255)
                                                                                                                                                                                                                                                                           tGCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCACGACCATCTCACCAAGGCCCCATGCGGAAGTGATAAACACCACCTGGTCAAAGCCGGATTCGGTATCAATGGAGAACATCACGCCAGATGATGCGAGGTCAGAGCGCACCATCCGTTGAACACCGGCGGAGAGCGCCACACCACGGTGATCGTAAcc                              >  1:9340/1‑262 (MQ=255)
                                                                                                                                                                                                                                                                            gCGGATTTTTTTCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCACGACCATCTCACCAAGGCCCCATGCGGAAGTGATAAACACCACCTGGTCAAAGCCGGATTCGGTATCAATGGAGAACATCACGCCAGATGATGCGAGGTCAGAGCGCACCATCCGTTg                                                                     <  1:1409680/222‑1 (MQ=255)
                                                                                                                                                                                                                                                                                 tttttttCGACCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCACGACCATCTCACCAAGGcc                                                                                                                                                                        >  2:1559875/1‑118 (MQ=255)
                                                                                                                                                                                                                                                                                        |||                                                                                                                                                                                                                                                                                  
ACTATGCAGCGTATAACGCTCCATGACCTGACCGCGACTGCGCACGGTTTCCGGACGCGCCTGCACAATGAACAGTTTACCGGTGTGGCCATCTTTCGCCCACTCAATATCCATCGGGCGACCGTAGTGTTTCTCAATTTGTACGGCCTGTTTTGCCA‑GTTCCTGCACTTCTTCGTTGGTCAGGCTG‑AAGATGTCACGCTGTTCCTGCGGTACGTCTTCGATTTTAACCTGCTTGCCGTGCTCCTGGGTCG‑‑GCGCGTAAACCATGCGGATTTTTTTGCTCCCCATGGTGCGGCGCACGATAGCCGGGCGATTCGCCGCCAGTGTCGGTTTATGCACGTAAAACTCATCCGGGTTAACCGCACCCTGCACGACCATCTCACCAAGGCCCCATGCGGAAGTGATAAACACCACCTGGTCAAAGCCGGATTCGGTATCAATGGAGAACATCACGCCAGAACTTGCGAGGTCAGAGCGCACCATCCGTTGAACACCGGCGGAGAGCGCCACACCACGGTGATCGTAACCCTGGTGCACACGATAAGAGATGGCGCGA  >  CP042583/1468002‑1468554

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A