Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F210 I1 R1 4928 368.7 6392010 97.5% 6232209 231.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,477,520 3 bp→TGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,477,5200AT100.0% 795.1 / NA 330intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base T (154/176);  total (154/176)
*CP0425831,477,5210CG100.0% 788.4 / NA 330intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base G (154/176);  total (154/176)
*CP0425831,477,5220TA99.4% 775.9 / NA 330intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (2/0);  new base A (152/175);  total (154/176)
Fisher's exact test for biased strand distribution p-value = 2.18e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 330 total aligned reads displayed.

TCTGCCCGGGTCTGAAGGTCACCACGCGCCGTGCTGTAATGGGAATATCCTCGCCCGTTTTCGGGTTACGTCCCGGGCGTTGATTCTTATCAC‑GCAGATCGAAGTTACCAAAACCA‑GAGAGTTTCACCTGTTCGCCGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCACTCATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAAACTTGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTACGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTACACGTCAAATAAGTTTACGCCAACTACCTGATTTACGCCAACTTTCTTACATTCGGATAAAATATCCGCTGCGGGAACGTTTTCTGCGACCACCACCGCGATGTCACGACGGTTCGCCGGGAAGCGAGAAAT  >  CP042583/1477248‑1477798
                                                                                                                                                                                                                                                                                  |||                                                                                                                                                                                                                                                                                    
tCTTCCCGGGTCTGAAGGTCACCACGCGCCGTGCTGTAATGGGAATATCCTCGCCCGTTTTCGGGTTACGTCCCGGGCGTTGATTCTTATCAC‑GCAGATCGAAGTTACCAAAACCA‑GAGAGTTTCACCTGTTCGCCGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGct                                                                                                                                                                                                                                                                        <  1:2262638/289‑1 (MQ=255)
    cccGGGTCTGAAGGTCACCACGCGCCGTGCTGTAATGGGAATATCCTCGCCCGTTTTCGGGTTACGTCCCGTGCGTTGATTCTTATCAC‑GCAGATCGAAGTTACCAAAACCA‑GAGAGTTTCACCTGTTCGCCGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATACCTCAATGTTTCCTGGAATCGCCCttt                                                                                                                                                                                                                                                                    >  2:672895/1‑289 (MQ=255)
       actgtcgAAGGTCACCACGCGCCGTGCTGTAATGGGAATATCCTCGCCCGTTTTCGGGTTACGTCCCGGGCGTTGATTCTTATCAC‑GCAGATCGAAGTTACCAAAACCA‑GAGAGTTTCACCTGTTCGCCGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTaa                                                                                                                                                                                                                                                                 >  1:345922/7‑289 (MQ=255)
          tCTGAAGGTCACCACGCGCCGTGCTGTAATGGGAATATCCTCGCCCGTTTTCGGGTTACGTCCCGGGCGTTGATTCTTATCAC‑GCAGATCGAAGTTACCAAAACCA‑GAGAGTTTCACCTGTTCGCCGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATg                                                                                                                                                                                                                                                               <  1:397385/288‑1 (MQ=255)
           cggAAGGTACCCACGCGCCGGGCTTTAAGTGGAATATCCTCGCCCGTTTTCGGGTTACGTCCCGGGCGTTGATTCTTATCAC‑GCAGATCGAAGTTACCAAAACCA‑GAGAGTTTCACCTGTTCGCCGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGc                                                                                                                                                                                                                                                              <  2:557975/286‑1 (MQ=255)
                   caccacGCGCCGTGCTGTAATGGGAATATCCTCGCCCGTTTTCGGGTTACGTCCCGGGCGTTGATTCTTATCAC‑GCAGATCGAAGTTACCAAAACCA‑GAGAGTTTCACCTGTTCGCCGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTTAATGATGCCTGGAATCGCTCTTTTAATGCCTCTAcaca                                                                                                                                                                                                                                                     >  2:440371/1‑289 (MQ=255)
                   caccacGCGCCGTGCTGTAATGGGAATATCCTCGCCCGTTTTCGGGTTACGTCCCGGGCGTTGATTCTTATCAC‑GCAGATCGAAGTTACCAAAACCA‑GAGAGTTTCACCTGTTCGCCGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTTTTTTAATGCCTCTacact                                                                                                                                                                                                                                                     >  1:2779521/1‑288 (MQ=255)
                    accacGCGCCGTGCTGTAATGGGAATATCCTCGCCCGTTTTCGGGTTACGTCCCGGGCGTTGATTCTTATCAC‑GCAGATCGAAGTTACCAAAACCA‑GAGAGTTTCACCTGTTCGCCGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACAt                                                                                                                                                                                                                                                    <  1:2698734/289‑1 (MQ=255)
                    accacGCGCCGTGCTGTAATGGGAATATCCTCGCCCGTCTTCGGGTTACGTCCCGGGCGTTGATTCCTATCAC‑GCAGCTCGAAGTTACCAAAACCA‑GAGAGTTTCACCGGTTCGCCGTTTTCCAGAGCGCGCCGGATCTCTTCGACAAACAGTTCAACCAGTTCGTTGGCATCCCGCTGGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCACCTTTTGTAAGCCCCATAGGTTTCACCCCTCCATGATGCCAGTAATCGCTCTTATCATGCCTCTACACAt                                                                                                                                                                                                                                                    >  2:1230398/1‑289 (MQ=255)
                      cacGCGCCGTGCTGTAATGGGAATATCCTCGCCCGTTTTCGGGTTACGTCCCGGGCGTTGATTCTTATCAC‑GCAGATCGAAGTTACCAAAACCA‑GAGAGTTTCACCTGTTCGCCGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACAttt                                                                                                                                                                                                                                                  >  1:105605/1‑289 (MQ=255)
                        cgcgCCGTGCTGTAATGGGAATATCCTCGCCCGTTTTCGGGTTACGTCCCGGGCGTTGATTCTTATCAC‑GCAGATCGAAGTTACCAAAACCA‑GAGAGTTTCACCTGTTCGCCGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTg                                                                                                                                                                                                                                                 >  1:1651198/1‑288 (MQ=255)
                           gcCGTGCTGTAATGGGAATATCCTCGCCCGTTTTCGGGTTACGTCCCGGGCGTTGATTCTTATCAC‑GCAGATCGAAGTTACCAAAACCA‑GAGAGTTTCACCTGTTCGCCGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCg                                                                                                                                                                                                                                              >  1:2664540/1‑288 (MQ=255)
                                    tAATGGGAATATCCTCGCCCGTTTTCGGGTTACGTCCCGGGCGTTGATTCTTATCAC‑GCAGATCGAAGTTACCAAAACCA‑GAGAGTTTCACCTGTTCGCCGTTTTCCAGAGCGCGACAGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCgg                                                                                                                                                                                                                                    <  2:345922/289‑1 (MQ=255)
                                     aaTGGGAATATCCTCGCCCGTTTTCGGGTTACGTCCCGGGCGTTGATTCTTATCAC‑GCAGATCGAAGTTACCAAAACCA‑GAGAGTTTCACCTGTTCGCCGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCgg                                                                                                                                                                                                                                    <  2:791881/288‑1 (MQ=255)
                                      aTGGGAATATCCTCGCCCGTTTTCGGGTTACGTCCCGGGCGTTGATTCTTATCAC‑GCAGATCGAAGTTACCAAAACCA‑GAGAGTTTCACCTGTTCGCCGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTACCAAACAGATATTCTGACATTTCAGCTTTTGTACGCGCCATAGGTTCAATCCCTCAATGATGCCTGGATTCGCTCTTTCAATCCTCCCACCCCTTTGACTACGGTAGCGGCa                                                                                                                                                                                                                                  >  2:3137754/1‑289 (MQ=255)
                                      aTGGAAATTTCCTCGCCCGGTTTCGGGTTACGTCCCGGGCGTTGATTCTTATCAC‑GAAGATCGAAGTTACCAAAACCA‑GAGAGTTTCACCTGTTCGCCGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCa                                                                                                                                                                                                                                  <  2:2790282/289‑1 (MQ=255)
                                       ttggAAGATCCTCGCACGTTTTCGGGTTACGGCACGGGCGTTGATTCTTATCAC‑GCAGATCGAAGTTACCAAAACCA‑GAGAGTTTAACCTGTTCGCCGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATC‑AACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAAt                                                                                                                                                                                                                                <  2:2840609/287‑1 (MQ=255)
                                         ggcatatCCTCGCTCGTTTTCGGGTTACGTCCCGGGCGTTGATTCTTATCAC‑GCAGATCGAAGTTACCAAAGCCA‑GAGAGTTTCAGCTTGTCGCCGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCGTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGAGATTCTGACATTTCAGCTTTTGTAAGCGCCATAGTTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAAt                                                                                                                                                                                                                                <  2:2592141/285‑1 (MQ=255)
                                         ggAATATCCTCGCCCGTTTTCGGGTTACGTCCCGGGCGTTGATTCTTATCAC‑GCAGATCGAAGTTACCAAAACCA‑GAGAGTTTCACCTGTTCGCCGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAAt                                                                                                                                                                                                                                >  1:1119753/1‑288 (MQ=255)
                                            atatCCTCGCCCGTTTTCGGGTTACGTCCCGGGCGTTGATTCTTATCAC‑GCAGATCGAAGTTACCAAAACCA‑GAGAGTTTCACCTGTTCGCCGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATctcc                                                                                                                                                                                                                            <  1:820208/289‑1 (MQ=255)
                                            atatCCTCGCCCGTTTTCGGGTTACGTCCCGGGCGTTGATTCTTATCAC‑GCAGATCGAAGTTACCAAAACCA‑GAGAGTTTCACCTGTTCGCCGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATctcc                                                                                                                                                                                                                            <  1:3041415/289‑1 (MQ=255)
                                              atCCTCGCCCGTTTTCGGGTTACGTCCCGGGCGTTGATTCTTATCAC‑GCAGATCGAAGTTACCAAAACCA‑GAGAGTTTCACCTGTTCGCCGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTaa                                                                                                                                                                                                                                                                 >  1:770799/1‑250 (MQ=255)
                                              atCCTCGCCCGTTTTCGGGTTACGTCCCGGGCGTTGATTCTTATCAC‑GCAGATCGAAGTTACCAAAACCA‑GAGAGTTTCACCTGTTCGCCGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATctcct                                                                                                                                                                                                                           >  2:3160241/1‑288 (MQ=255)
                                              atCCTCGCCCGTTTTCGGGTTACGTCCCGGGCGTTGATTCTTATCAC‑GCAGATCGAAGTTACCAAAACCA‑GAGAGTTTCACCTGTTCGCCGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATctcc                                                                                                                                                                                                                            >  1:144365/1‑287 (MQ=255)
                                                   cGCCCGTTTTCGGGTTACGTCCCGGGCGTTGATTCTTATCAC‑GCAGATCGAAGTTACCAAAACCA‑GAGAGTTTCACCTGTTCGCCGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTAAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGCAATCGCTCTTTAAATGCCTCTAAACATTGGGCGCCGGTCGCGGCAATCTCCcctcct                                                                                                                                                                                                                      >  1:2355609/1‑288 (MQ=255)
                                                    gCCCGTTTTCGGGTTACGTCCCGGGCGTTGATTCTTATCAC‑GCAGATCGAAGTTACCAAAACCA‑GAGAGTTTCACCTGTTCGCCGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCttcttc                                                                                                                                                                                                                    <  1:126892/289‑1 (MQ=255)
                                                     cccGTTTTCGGGTTACGTCCCGGGCGTTGATTCTTATCAC‑GCAGATCGAAGTTACCAAAACCA‑GAGAGTTTCACCTGTTCGCCGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCg                                                                                                                                                                                                                   >  2:1816643/1‑289 (MQ=255)
                                                      ccGTTTTCGGGTTACGTCCCGGGCGTTGATTCTTATCAC‑GCAGATCGAAGTTACCAAAACCA‑GAGAGTTTCACCTGTTCGCCGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGa                                                                                                                                                                                                                  <  1:2536445/289‑1 (MQ=255)
                                                          tttCGGGTTACGTCCCGGGCGTTGATTCTTATCAC‑GCAGATCGAAGTTACCAAAACCA‑GAGAGTTTCACCTGTTCGCCGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAgtgt                                                                                                                                                                                                              <  1:1737555/289‑1 (MQ=255)
                                                           ttCGGGTTACGTCCCGGGCGTTGATTCTTATCAC‑GCAGATCGAAGTTACCAAAACCA‑GAGAGTTTCACCTGTTCGCCGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTa                                                                                                                                                                                                             <  1:2607396/289‑1 (MQ=255)
                                                           ttCGGGTTACGTCCCGGGCGTTGATTCTTATCAA‑GCAGATCGAAGTTACCAAAACCA‑GAGAGTTTCACCTGTTCGCCGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTa                                                                                                                                                                                                             <  2:642596/289‑1 (MQ=255)
                                                                gTTACGTCCCGGGCGTTGATTCTTATCAC‑GCAGATCGAAGTTACCAAAACCA‑GAGAGTTTCACCTGTTCGCCGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTACGGc                                                                                                                                                                                                         <  1:1570483/288‑1 (MQ=255)
                                                                  tACGTCCCGGGCGTTGATTCTTATCAC‑GCAGATCGAAGTTACCAAAACCA‑GAGAGTTTCACCTGTTCGCCGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTACGGCTg                                                                                                                                                                                                       <  1:2382568/288‑1 (MQ=255)
                                                                     gTCCCGTGCGTTGATTCTTATCAC‑GCAGATCGAAGTTACCAAAACCA‑GAGAGTTTCACCTGTTCGCCGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTACGGCTGGTAt                                                                                                                                                                                                   <  1:2470597/289‑1 (MQ=255)
                                                                          gggCGTTGATTCTTATCAC‑GCAGATCGAAGTTACCAAAACCA‑GAGAGTTTCACCTGTTCGCCGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCAGAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCCTACTCCTCTTCTTCGAGGGTACGGCTGGTATTTTGc                                                                                                                                                                                              >  2:1319105/1‑289 (MQ=255)
                                                                          gggCGTTGATTCTTATCAC‑GCAGATCGAAGTTACCAAAACCA‑GAGAGTTTCACCTGTTCGCC‑ATTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTACGGCTGGTATCTTGCa                                                                                                                                                                                             >  1:2829278/1‑289 (MQ=255)
                                                                           ggCGTTGATTCTTATCAC‑GCAGATCGAAGTTACCAAAACCA‑GAGAGTTTCACCTGTTCGCCGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCCTCTCTTCTTCGAGTTTACGGCTGGTATCTTGCa                                                                                                                                                                                             >  2:2383658/1‑289 (MQ=255)
                                                                               ttGATTCTTATCAC‑GCAGATCGAAGTTACCAAAACCA‑GAGAGTTTCACCTGTTCGCCGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTaa                                                                                                                                                                                                                                                                 >  2:2278136/1‑217 (MQ=255)
                                                                               ttGATTCTTA‑CACAGCAGAACGAAGTTACCAAAACCC‑GCGCGTTTCACCTGTTCGCCGGTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTACAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTACGGCTGGTATCTTGCAGGAt                                                                                                                                                                                         <  2:1722174/289‑1 (MQ=255)
                                                                                 gATTCTTATCAC‑GCAGATCGAAGTTACCAAAACCA‑GAGAGTTTCACCTGTTCGCCGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACTTTTGGCGACGGTAGCGGCAATCTCCTcttctt                                                                                                                                                                                                                     >  1:511525/1‑259 (MQ=255)
                                                                                 gATTCTTATCAC‑GCAGATCGAAGTTACCAAAACCA‑GAGAGTTTCACCTGTTCGCCGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAAt                                                                                                                                                                                                                                >  2:1349516/1‑248 (MQ=255)
                                                                                 gATTCTTATCAC‑GCAGATCGAAGTTACCAAAACCA‑GAGAGTTTCACCTGTTCGCCGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAAt                                                                                                                                                                                                                                <  1:1349516/248‑1 (MQ=255)
                                                                                              gCAGATCGAAGTTACCAAAACCC‑GAGAGTTTCACCTGTTCGCCGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTACGGCTGGTATCTTGCAGGATCAGGCTTATGGCGa                                                                                                                                                                           <  1:797543/289‑1 (MQ=255)
                                                                                              cacgtgcGAAGGTACCAAACCCAGGTGAG‑TTCACCTGTTCTCCGTTTTCCAGAGCGCGACGGATCTCTTCAAAAAACAGTTCACCCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTACGGCTTGTATCTTGCAGGATCAGGCTTATGGCGa                                                                                                                                                                           <  2:2522124/283‑1 (MQ=255)
                                                                                                aGATCGAAGTTACCAAAACCA‑GAGAGTTTCACCTGTTCGCCGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTACGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAg                                                                                                                                                                          <  1:2560379/288‑1 (MQ=255)
                                                                                                 gATCGAAGTTACCAAAACCA‑GAGAGTTTCACCTGTTCGCCGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCg                                                                                                                                                                                                                                                                          <  1:702942/191‑1 (MQ=255)
                                                                                                 gATCGAAGTTACCAAAACCA‑GAGAGTTTCACCTGTTCGCCGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATctcc                                                                                                                                                                                                                            <  2:2123440/237‑1 (MQ=255)
                                                                                                  aTCGAAGTTACCAAAACCA‑GAGAGTTTCACCTGTTCGCCGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCa                                                                                                                                                                                                                                  <  2:1638569/230‑1 (MQ=255)
                                                                                                  aTCGAAGTTACCAAAACCA‑GAGAGTTTCACCTGTTCGCCGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCa                                                                                                                                                                                                                                  >  1:1202818/1‑230 (MQ=255)
                                                                                                          tACCAAAACCA‑GAGAGTTTCACCTGTTCGCCGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTACGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTtata                                                                                                                                                                 <  1:1243967/287‑1 (MQ=255)
                                                                                                            ccAAAACCA‑GAGAGTTTCACCTGTTCGCCGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAgtgt                                                                                                                                                                                                              >  2:507935/1‑240 (MQ=255)
                                                                                                            ccAAAACCA‑GAGAGTTTCACCTGTTCGCCGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTACGGCTGGTATCTTTCAGGATCAGGCTTATGGCGAGGCCCTTATcccc                                                                                                                                                              >  2:2550633/1‑288 (MQ=255)
                                                                                                            ccAAAACCA‑GAGAGTTTCACCTGTTCGCCGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTACGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTta                                                                                                                                                                   <  1:875544/283‑1 (MQ=255)
                                                                                                            ccAAAACCA‑GAGAGTTTCACCTGTTCGCCGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCCCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGAAATCTCCTCTTCTTCGAGTGTACGGCTGTTATCTTGCAGGACCAGGCTTATGGCGACGACCTTCTAcc                                                                                                                                                               >  2:2357936/1‑287 (MQ=255)
                                                                                                                           tttCACCTGTTCGCCGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGa                                                                                                                                                                                                                                             >  2:3102619/1‑195 (MQ=255)
                                                                                                                           tttCACCTGTTCGCCGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGa                                                                                                                                                                                                                                             <  1:3102619/195‑1 (MQ=255)
                                                                                                                               aCCTGTTCGCCGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTACGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACcg                                                                                                                                           <  1:2158617/289‑1 (MQ=255)
                                                                                                                                   gTTCGCCGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCttcttc                                                                                                                                                                                                                    >  1:199520/1‑212 (MQ=255)
                                                                                                                                   gTTCGCCGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTACGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGt                                                                                                                                       <  1:3160241/289‑1 (MQ=255)
                                                                                                                                   gTTCGCCGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTACGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGt                                                                                                                                       >  1:2217413/1‑289 (MQ=255)
                                                                                                                                    ttCGCCGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTACGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGc                                                                                                                                                        <  1:3078188/271‑1 (MQ=255)
                                                                                                                                    ttCGCCGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTACGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGc                                                                                                                                                        >  2:3078188/1‑271 (MQ=255)
                                                                                                                                     tCGCCGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTACGGCTGGTATCTTg                                                                                                                                                                                               >  2:2692972/1‑231 (MQ=255)
                                                                                                                                         cGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGc                                                                                                                                                                                                                                               >  1:682493/1‑179 (MQ=255)
                                                                                                                                                     cgcgACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAgtgt                                                                                                                                                                                                              <  2:700034/200‑1 (MQ=255)
                                                                                                                                                      gcgACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTACGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTACACGTCAAATAAGTTTa                                                                                                                     <  1:594413/288‑1 (MQ=255)
                                                                                                                                                        gACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTACGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTACACGTCAAATAAGTTTACg                                                                                                                   <  1:1835985/288‑1 (MQ=255)
                                                                                                                                                         tcGGATGTCTACGACAATCAGTGCACCCAGTTCTTTGGCATCCCGCTGAGTAAGCCCAAGCTTATCAAACAGATATTCTGACGTTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTACGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTACACGTCAAATAAGTTTACGcc                                                                                                                 <  2:216310/288‑1 (MQ=255)
                                                                                                                                                          cGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGc                                                                                                                                                                                                                                                              >  1:558388/1‑147 (MQ=255)
                                                                                                                                                          cGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTACGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTACACGTCAAATAAGTTTACGcc                                                                                                                 <  2:1775984/288‑1 (MQ=255)
                                                                                                                                                               ctctTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGc                                                                                                                                                                                                                                                                         >  1:628982/1‑131 (MQ=255)
                                                                                                                                                               ctctTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTACGGCTGGTATCTTGCAGGATCAGGCTTATGGCGa                                                                                                                                                                           >  1:973799/1‑225 (MQ=255)
                                                                                                                                                                    cGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAAt                                                                                                                                                                                                                                >  2:609698/1‑167 (MQ=255)
                                                                                                                                                                              ttCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTACGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAgg                                                                                                                                                                         >  2:872966/1‑212 (MQ=255)
                                                                                                                                                                                        tCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTACGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTACACGTCAAATAAGTTTACGCCAACTACCTGATTTACGCCAACTTTCTTACa                                                                                   <  1:2095769/288‑1 (MQ=255)
                                                                                                                                                                                         cTTTCGCCTCCCGCTTGTCAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTACGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTACGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTACACGTCAAATAAGTTTACGCCAACTACCTGATTTACGCCAACTTTCTTACAtt                                                                                 <  2:1119753/289‑1 (MQ=255)
                                                                                                                                                                                                 tCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTACGGCTGGTATCtt                                                                                                                                                                                                >  2:3020779/1‑170 (MQ=255)
                                                                                                                                                                                                 tCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTACGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACAcc                                                                                                                                                  <  1:1152493/216‑1 (MQ=255)
                                                                                                                                                                                                 tCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTACGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACAcc                                                                                                                                                  >  2:1152493/1‑216 (MQ=255)
                                                                                                                                                                                                                   aGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTa                                                                                                                                                                                                             <  2:890445/139‑1 (MQ=255)
                                                                                                                                                                                                                         tCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTACGGCTGGTATCTTGCAGGAt                                                                                                                                                                                         >  1:2344466/1‑153 (MQ=255)
                                                                                                                                                                                                                         tCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTACGGCTGGTATCTTGCAGGAt                                                                                                                                                                                         >  2:1475239/1‑153 (MQ=255)
                                                                                                                                                                                                                         tCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTACGGCTGGTATCTTGCAGGAt                                                                                                                                                                                         <  2:2344466/153‑1 (MQ=255)
                                                                                                                                                                                                                         tCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTACGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTACACGTCAAATAAGTTTACg                                                                                                                   >  1:1086583/1‑223 (MQ=255)
                                                                                                                                                                                                                         tCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTACGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTACACGTCAAATAAGTTTACg                                                                                                                   <  2:1086583/223‑1 (MQ=255)
                                                                                                                                                                                                                             tcatatattctgacATTTCAGCTTTTGTAAGCGCCTTAGGTTCAATTCCGCATTGATGCCGCGAATCGCTCTTTTATTGCCTGTACGCAGTTGGCGAGGGTAGCGGCAATCTCTTCTTCTTCGAGTGTACGGCTTGTATCTTGCAGGATCAGTCTTATGGCGACGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTACACGTCAAATAAGTTTACGCCAACTACCTGATTTACGCCAACTTTCTTACATTCGGATAAAATATCCGCTGCGGGAACGTTTTCTGCGa                                             <  2:2665324/276‑1 (MQ=255)
                                                                                                                                                                                                                               aGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTACGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCa                                                                                                                                                       <  1:286493/181‑1 (MQ=255)
                                                                                                                                                                                                                               aGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTACGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCa                                                                                                                                                       >  2:286493/1‑181 (MQ=255)
                                                                                                                                                                                                                                  tattctgacATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTACGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTACACGTCAAATAAGTTTACGCCAACTACCTGATTTACGCCAACTTTCTTACATTCGGATAAAATATCCGCTGCGGGAACGTTTTCTGCGaccacc                                        >  2:1922562/9‑289 (MQ=255)
                                                                                                                                                                                                                                   attctgacATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTACGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCt                                                                                                                                                <  2:2018827/177‑1 (MQ=255)
                                                                                                                                                                                                                                       tgacATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTACGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACACCTCCGCAACACCCTTACAGCGGTACAAGTCAAATAAGTTTACGCCAACTACCTGATTTACGCTACCTTTCTTACATTCGGATAAAATATCCGCTGCGGGAACGTTTTCTGCGACCACCACcgc                                   >  1:2030238/4‑289 (MQ=255)
                                                                                                                                                                                                                                        gacATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTACGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTACACGTCAAATAAGTTTACGCCAACTACCTGATTTACGCCAACTTTCTTACATTCGGATAAAATATCCGCTGCGGGAACGTTTTCTGCGACCACCACcgc                                   >  2:1181423/3‑288 (MQ=255)
                                                                                                                                                                                                                                         acATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTACGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTACACGTCAAATAAGTTTACGCCa                                                                                                                >  2:2908955/2‑210 (MQ=255)
                                                                                                                                                                                                                                         acATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTACGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTACACGTCAAATAAGTTTACGCCa                                                                                                                <  1:2908955/209‑1 (MQ=255)
                                                                                                                                                                                                                                           aTTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTACGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGc                                                                                                                                                                        <  1:2543052/152‑1 (MQ=255)
                                                                                                                                                                                                                                                   gttggTAAGCGCCATAGGTTCAATCCCTCAATGATGACGGGAATCGCTCTTTTAATGCCTCTACACATTGGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTACGGCTGGTAGCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTACACGTCAAATAAGTTTACGCCAACTACCTGATTTACGCCAACTTTCTTACATTCGGATAAAATATCCGCTGCGGGAACGTTTTCTGCGACCACCACCGCGATGTCacga                         <  1:1875112/283‑1 (MQ=255)
                                                                                                                                                                                                                                                       gTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTACGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTACACGTCAAATAAGTTTACGCCAACTACCTGATTTACGCCAACTTTCTTACATTCGGATAAAATATCCGCTGCGGGAACGTTTTCt                                                 <  2:2537880/259‑1 (MQ=255)
                                                                                                                                                                                                                                                                         aTCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTACGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTACACGTCAAATAAGTTTACGCCAACTACCTGATTTACGCCAACTTTCTTACATTCGGATAAAATATCCGCTGCGGGAACGTTTTCTGCGACCACCACCGCGATGTCACGACGGTTCGCCGGGAAGCGAGaaa   >  2:2057225/1‑287 (MQ=255)
                                                                                                                                                                                                                                                                         aTCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTACGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTACACGTCAAATAAGTTTACGCCAACTACCTGATTTACGCCAACTTTCTTACATTCGGATAAAATATCCGCTGCGGGAACGTTTTCTGCGACCACCACCGCGATGTCACGACGGTTCGCCGGGAAGCGAGAAAt  >  2:1048728/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                         aTCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTACGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTACACGTCAAATAAGTTTACGCCAACTACCTGATTTACGCCAACTTTCTTACATTCGGATAAAATATCCGCTGCGGGAACGTTTTCTGCGACCACCACCGCGATGTCACGACGGTTCGCCGGGAAGCGAGAAAt  >  2:2738862/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                                  |||                                                                                                                                                                                                                                                                                    
TCTGCCCGGGTCTGAAGGTCACCACGCGCCGTGCTGTAATGGGAATATCCTCGCCCGTTTTCGGGTTACGTCCCGGGCGTTGATTCTTATCAC‑GCAGATCGAAGTTACCAAAACCA‑GAGAGTTTCACCTGTTCGCCGTTTTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTGCTAAGCCCAAGCTTATCAAACAGATATTCACTCATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAAACTTGCCTGGAATCGCTCTTTTAATGCCTCTACACATTTGGCGACGGTAGCGGCAATCTCCTCTTCTTCGAGTGTACGGCTGGTATCTTGCAGGATCAGGCTTATGGCGAGGCTCTTATACCCCTCCGCAACACCCTTACCGCGGTACACGTCAAATAAGTTTACGCCAACTACCTGATTTACGCCAACTTTCTTACATTCGGATAAAATATCCGCTGCGGGAACGTTTTCTGCGACCACCACCGCGATGTCACGACGGTTCGCCGGGAAGCGAGAAAT  >  CP042583/1477248‑1477798

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A