Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F210 I1 R1 4928 368.7 6392010 97.5% 6232209 231.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,492,315 3 bp→TCG intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,492,3150AT99.5% 1024.6 / NA 430intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base A (0/2);  new base T (231/195);  total (231/199)
Fisher's exact test for biased strand distribution p-value = 2.11e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,492,3160GC99.8% 1027.4 / NA 430intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/1);  new base C (231/198);  total (231/199)
Fisher's exact test for biased strand distribution p-value = 4.63e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,492,3170CG99.8% 1025.1 / NA 430intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (1/0);  new base G (230/198);  total (231/199)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 430 total aligned reads displayed.

TTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAGTTACACCGTCACCACTTCCGTGCACTGTATAAAAATCCTATACTGTACGTATCGACAGTTTAGTGAGTTTTATCATGACGGCGGAAGGTCACCTTCTCTTTTCTATTGCTTGTGCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGAGCTTTCTTGGGCAGCGATTAAAATGGATAAGTAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAGTCTGCTGGCGGTATTTGCGCTGCTGGCAACCTTTTACCTTAAGGTTCCGGAAGGCTGGTTCATTCCGGCTGATGCGCTACAAGGAATGGTGCTGGGTTATTTGAGCCACATACTTGCCGATATGCTGACACCCGCCGGTGTTCCCCTGCTCTGGCCATGCCGCTGGCGTTTCCGCTTGCCTATCCTGGTTCCCCAAAAGGGC  >  CP042583/1492035‑1492593
                                                                                                                                                                                                                                                                                        |||                                                                                                                                                                                                                                                                                    
ttATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAGTTACACCGTCACCACTTCCGTGCACTGTATAAAAATCCTATACTGTACGTATCGACAGTTTAGTGAGTTTTATCATGACGGCGGAAGGTCACCTTCTCTTTTCTATTGCTTGTGCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCtt                                                                                                                                                                                                                                                                                >  1:1119044/1‑289 (MQ=255)
                 cAACTGACGGATTAATCGTCAATTTAAGAGAAAGAGTTACACCGTCACCACTTCCGTGCACTGTATAAAAATCCTATACTGTACGTATCGACAGTTTAGTGAGTTTTATCATGACGGCGGAAGGTCACCTTCTCTTTTCTATTGCTTGTGCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATg                                                                                                                                                                                                                                                               <  2:3083194/289‑1 (MQ=255)
                                                      tACACCGTCACCACTTCCCTGCACTTTATAAAAATCCTATGCTGTACGTATCGAAAGTTTAGTGAGTTTTATCATGACGGCGGAAGGTCACCTTCTCTTTTCTATTGCTTGTGCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCg                                                                                                                                                                                                                           <  2:437994/288‑1 (MQ=255)
                                                       acacCGTCACCACTTCCGTGCACTGTATAAAAATCCTATACTGTACGTATCGACAGTTTAGTGAGTTTTATCATGACGGCGGAAGGTCACCTTCTCTTTTCTATTGCTTGTGCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATg                                                                                                                                                                                                                                                               >  1:1388636/1‑251 (MQ=255)
                                                       acacCGTCACCACTTCCGTGCACTGTATAAAAATCCTATACTGTACGTATCGACAGTTTAGTGAGTTTTATCATGACGGCGGAAGGTCACCTTCTCTTTTCTATTGCTTGTGCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATg                                                                                                                                                                                                                                                               <  2:1388636/251‑1 (MQ=255)
                                                       acacCGTCACCACTTCCGTGCACTGTATAAAAATCCTATACTGTACGTATCGACAGTTTAGTGAGTTTTATCATGACGGCGGAAGGTCACCTTCTCTTTTCTATTGCTTGTGCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGTCATCGTg                                                                                                                                                                                                                         >  1:726703/1‑289 (MQ=255)
                                                         cccgtacccacTTCCGTGCACTGTATAAAAATCCTATACTGTACGTATCGACAGTTTAGTGAGTTTTATCATGACGGCGGAAGGTCACCTTCTCTTTTCTATTGGTTGTGCGGTATTTGCCAAAAATGCCGGGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGt                                                                                                                                                                                                                       <  2:1482219/282‑1 (MQ=255)
                                                             tCACCACTTCCGTGCACTGTATAAAAATCCTATACTGTACGTATCGACAGTTTAGTGAGTTTTATCATGACGGCGGAAGGTCACCTTCTCTTTTCTATTGCTTGTGCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCCCTTTTGGGCCTCGGGGtttt                                                                                                                                                                                                                    >  2:3136327/1‑288 (MQ=255)
                                                                   cTTTCGTTCAATGTATAACAGTCCTCTTATGTACGTATCGGCAGTTTAGTGAGTTGTATCATGACGGCGGAAGGTAACCTTCTCTTGTCTATTGCTTGTGCGGTATGTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCcaca                                                                                                                                                                                                             <  2:1289796/289‑1 (MQ=255)
                                                                    ttCCGGGCACTGTATAAAAATCCTTTACTGTACGTATCGACAGTTTAGTGAGTTTTATCATGACGGCGGAAGGTCACCTTCTCTTTTCTATTGCTTGTGCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAg                                                                                                                                                                                                            <  2:395828/289‑1 (MQ=255)
                                                                     tCCGTGCACTGTATAAAAATCCTATACTGTACGTATCGACAGTTTAGTGAGTTTTATCATGACGGCGGAAGGTCACCTTCTCTTTTCTATTGCTTGTGCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAg                                                                                                                                                                                                            >  1:1666248/1‑288 (MQ=255)
                                                                     tCCGTGCACTGTATAAAAATCCTATACTGTACGTATCGACAGTTTAGTGAGTTTTATCATGACGGCGGAAGGTCACCTTCTCTTTTCTATTGCTTGTGCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAg                                                                                                                                                                                                            >  2:791271/1‑288 (MQ=255)
                                                                       cGTGCACTGTATAAAAATCCTATACTGTACGTCTCGACAGTTTAGTGAGTTTTATCATGACGGCGGAAGGTCACCTTCTCTTTTCTATTGATTGTGCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCCAAGTCGTTTCTTGGGCCGCGTTTAAAATGGATATCAAAACCGATCGCCAGCGCTTTTGGGCATCGTGGTTTTACCCACAg                                                                                                                                                                                                            >  1:1016504/1‑286 (MQ=255)
                                                                         tGCACTGTATAAAAATCCTATACTGTACGTATCGACAGTTTAGTGAGTTTTATCATGACGGCGGAAGGTCACCTTCTCTTTTCTATTGCTTGTGCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAGTct                                                                                                                                                                                                         >  2:284948/1‑287 (MQ=255)
                                                                         tGCACTGTATAAAAATCCTATACTGTACGTATCGACAGTTTAGTGAGTTTTATCATGACGGCGGAAGGTCACCTTCTCTTTTCTATTGCTTGTGCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAGTct                                                                                                                                                                                                         >  1:2486127/1‑287 (MQ=255)
                                                                         tGCACTGTATAAAAATCCTATACTGTACGTATCGACAGTTTAGTGAGTTTTATCATGACGGCGGAAGGTCACCTTCTCTTTTCTATTGCTTGTGCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCAACCGTctgt                                                                                                                                                                                                       >  2:1574206/1‑288 (MQ=255)
                                                                           cACTGTATAAAAATCCTATACTGTACGTATCGACAGTTTAGTGAGTTTTATCATGACGGCGGAAGGTCACCTTCTCTTTTCTATTGCTTGTGCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCcgcg                                                                                                                                                                                                                                        >  2:1814189/1‑254 (MQ=255)
                                                                           cACTGTATAAAAATCCTATACTGTACGTATCGACAGTTTAGTGAGTTTTATCATGACGGCGGAAGGTCACCTTCTCTTTTCTATTGCTTGTGCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCcgcg                                                                                                                                                                                                                                        <  1:1814189/254‑1 (MQ=255)
                                                                              tGTATAAAAATCCTATACTGTACGTATCGACAGTTTAGTGAGTTTTATCATGACGGCGGAAGGTCACCTTCTCTTTTCTATTGCTTGTGCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAGTCTGCTGGCg                                                                                                                                                                                                  >  1:267007/1‑289 (MQ=255)
                                                                              tGTATAAAAATCCTATACTGTACGTATCGACAGTTTAGTGAGTTTTATCATGACGGCGGAAGGTCACCTTCTCTTTTCTATTGCTTGCTCGGTATTTGCCAAAACTGCCGAGCTGACGCCCGTGCTGGCACAGGTTGACTGGTGGCATACTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCATCCAACGTCGTCTCTTGGGCAGCGATTAAAATGGATATACAAACCGATCGCCGCCGCTTTTGGGCATCTTGTTTTTACCCACCGTCTGCTcgcg                                                                                                                                                                                                  >  2:2886316/1‑289 (MQ=255)
                                                                                tataAAAATCCTATACTGTACGTATCGACAGTTTAGTGAGTTTTATCATGACGGCGGAAGGTCACCTTCTCTTTTCTATTGCTTGTGCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAg                                                                                                                                                                                                                                                                          >  1:2150823/1‑215 (MQ=255)
                                                                                tataAAAATCCTATACTGTACGTATCGACAGTTTAGTGAGTTTTATCATGACGGCGGAAGGTCACCTTCTCTTTTCTATTGCTTGTGCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCcg                                                                                                                                                                                                                                          >  1:2878227/1‑247 (MQ=255)
                                                                                tataAAAATCCTATACTGTACGTATCGACAGTTTAGTGAGTTTTATCATGACGGCGGAAGGTCACCTTCTCTTTTCTATTGCTTGTGCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAGTCTGCTGGCGGt                                                                                                                                                                                                >  2:2181570/1‑289 (MQ=255)
                                                                                tataAAAATCCTATACTGTACGTATCGACAGTTTAGTGAGTTTTATCATGACGGCGGAAGGTCACCTTCTCTTTTCTATTGCTTGTGCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAGTCTGCTGGCGGt                                                                                                                                                                                                >  1:2446330/1‑289 (MQ=255)
                                                                                       aTCCTATACTGTACGTATCGACAGTTTAGTGAGTTTTATCATGACGGCGGAAGGTCACCTTCTCTTTTCTATTGCTTGTGCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAGTCTGCTGGCGGTATTTgcg                                                                                                                                                                                         <  1:1275611/289‑1 (MQ=255)
                                                                                         ccTATGCTGTACGTTTAGACAGTTTAGTGAGTTTTATCATGACGGCGGAAGGTCACCTTCTCTTTCCTTTTGCTCGTGCGGTATTTGCCAAAAATGTCAGACTGACGCCCGAGCTGGCACAGGGTGACTGGTGGCCGATTCACCCTTCCGCAAACCTGACGTCTTTGTTACCGGACAACGATCACCCAAAGTCGTTTCGTAATCCGAGACTACAATGGATATCAAAACCGGTCGCCCGCGCTTTTGGGCATCGTCGTTTGACCCACAGTCTGCTAGCGGTATTTgca                                                                                                                                                                                         <  2:1016504/287‑2 (MQ=255)
                                                                                          cTATACTGTACGTATCGACAGTTTAGTGAGTTTTATCATGACGGCGGAAGGTCACCTTCTCTTTTCTATTGCTTGTGCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTg                                                                                                                                                                                                                                  <  2:2958665/245‑1 (MQ=255)
                                                                                          cTATACTGTACGTATCGACAGTTTAGTGAGTTTTATCATGACGGCGGAAGGTCACCTTCTCTTTTCTATTGCTTGTGCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAGTCTGCTGGCGGTATTTg                                                                                                                                                                                           >  2:1754634/1‑284 (MQ=255)
                                                                                          cTATACTGTACGTATCGACAGTTTAGTGAGTTTTATCATGACGGCGGAAGGTCACCTTCTCTTTTCTATTGCTTGTGCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAGTCTGCTGGCGGTATTTg                                                                                                                                                                                           <  1:1754634/284‑1 (MQ=255)
                                                                                          cTATACTGTACGTATCGACAGTTTAGTGAGTTTTATCATGACGGCGGAAGGTCACCTTCTCTTTTCTATTGCTTGTGCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAGTCTGCTGGCGGTATTTGCgct                                                                                                                                                                                       >  1:205275/1‑288 (MQ=255)
                                                                                          cTATACTGTACGTATCGACAGTTTAGTGAGTTTTATCATGACGGCGGAAGGTCACCTTCTCTTTTCTATTGCTTGTGCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAGTCTGCTGGCGGTATTTGCgct                                                                                                                                                                                       >  1:189523/1‑288 (MQ=255)
                                                                                          cTATACTGTACGTATCGACAGTTTAGTGAGTTTTATCATGACGGCGGAAGGTCACCTTCTCTTTTCTATTGCTTGTGCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCGTGGGCAGCGATTAAAATGGATATCAAAACCGACCTCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAGTCCGCTGGGGGTATTTGctct                                                                                                                                                                                       >  2:2020998/1‑288 (MQ=255)
                                                                                              aCTTTACGTATCGACCGGTTAGTGAATTTTAACCTGAAGTCGTAAGGTCACCTTCACGTTTGTATTGATTGTGCGGTAGTTGCCGAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGTCGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAGTCTGCTGGCGGTATTTGCGCTGCTgg                                                                                                                                                                                  <  2:1180709/289‑1 (MQ=255)
                                                                                               cggTACGTATCGACAGTTTAGTGAGTTTTATCATGACGGCGGAAGGTCACCTTCTCTTTTCTATTGCTTGTGCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAGTCTGCTGGCGGTATTTGCGCTGCTGGc                                                                                                                                                                                 <  1:842303/287‑1 (MQ=255)
                                                                                                  tACGTATCGACAGTTTAGTGAGTTTTATCATGACGGCGGAAGGTCACCTTCTCTTTTCTATTGCTTGTGCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATg                                                                                                                                                                                                                                                               <  2:572451/208‑1 (MQ=255)
                                                                                                  tACGTATCGACAGTTTAGTGAGTTTTATCATGACGGCGGAAGGTCACCTTCTCTTTTCTATTGCTTGTGCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATg                                                                                                                                                                                                                                                               <  2:2530470/208‑1 (MQ=255)
                                                                                                  tACGTATCGACAGTTTAGTGAGTTTTATCATGACGGCGGAAGGTCACCTTCTCTTTTCTATTGCTTGTGCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGccc                                                                                                                                                                                                                                           >  2:2158948/1‑228 (MQ=255)
                                                                                                  tACGTATCGACAGTTTAGTGAGTTTTATCATGACGGCGGAAGGTCACCTTCTCTTTTCTATTGCTTGTGCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCTTCGTGGTTTTACCCACAGTCTGCTGGCGGTATTTGCGCGGCTGGCaa                                                                                                                                                                               >  1:896215/1‑288 (MQ=255)
                                                                                                  tACGTATCGACAGTTTAGTGAGTTTTATCATGACGGCGGAAGGTCACCTTCTCTTTTCTATTGCTTGTGCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTTGTTTTACCCACAGTCGTCTGGCGGTGTTTGCTCTGCTGGCaa                                                                                                                                                                               >  2:1702634/1‑288 (MQ=255)
                                                                                                  tACGTATCGACAGTTTAGTGAGTTTTATCATGACGGCGGAAGGTCACCTTCTCTTTTCTATTGCTTGTGCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAGTCTGCTGGCGGTATTTGCGCTGCTGGCaa                                                                                                                                                                               >  1:1495694/1‑288 (MQ=255)
                                                                                                  tACGTATCGACAGTTTAGTGAGTTTTATCATGACGGCGGAAGGTCACCTTCTCTTTTCTATTGCTTGTGCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCACTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCTCAGTCTGCTGGCGGTCTTTTCGCTGCTGGcca                                                                                                                                                                               >  2:145638/1‑286 (MQ=255)
                                                                                                     gTATCGACAGTTTAGTGAGTTTTATCATGACGGCGGAAGGTCACCTTCTCTTTTCTATTGCTTGTGCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAGTCTGCTGGCGGTATTTGCGCTGCTGGCAACCtt                                                                                                                                                                           <  1:1619901/289‑1 (MQ=255)
                                                                                                      tATCGACAGTTTAGTGAGTTTTATCATGACGGCGGAAGGTCACCTTCTCTTTTCTATTGCTTGTGCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAGTCTGCTGGCGGTATTTGCGCTGCTGGCAACCttt                                                                                                                                                                          <  1:47429/289‑1 (MQ=255)
                                                                                                       aTCGACAGTTTAGTGAGTTTTATCATGACGGCGGAAGGTCACCTTCTCTTTTCTATTGCTTGTGCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAGTCTGCTGGCGGTATTTGCGCTGCTGGc                                                                                                                                                                                 >  1:2229416/1‑281 (MQ=255)
                                                                                                       aTCGACAGTTTAGTGAGTTTTATCATGACGGCGGAAGGTCACCTTCTCTTTTCTATTGCTTGTGCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGCCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAGTCTGCTGCCGGGATTTGCCATGCTGGCAACCtttt                                                                                                                                                                         >  2:1992582/1‑289 (MQ=255)
                                                                                                               tttAGTGAGTTTTATCATGACGGCGGAAGGTCACCTTCTCTTTTCTATTGCTTGTGCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGTTTAAAATTGATATCAAAACCGATCTCCCGCGCTTTTGGGACGCGTGGTTTTACCACAAATACGCTGGCGGTAATTCCTCTGCAGGGTACCTTTTACCTTAAg                                                                                                                                                                 >  2:2761798/1‑289 (MQ=255)
                                                                                                               tttAGTGAGTTTTATCATGACGGCGGAAGGTCACCTTCTCTTTTCTATTGCTTGTGCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAGTCTGCTGGCGGTATTTGCGCTGCTGGCAACCTTTTACCTTAAg                                                                                                                                                                 >  1:156823/1‑289 (MQ=255)
                                                                                                                         tttATCATGACGGCGGAAGGTCACCTTCTCTTTTCTATTGCTTGTGCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTATCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAGTCTGCTGGCGGTATTTGCGCTGCTGGCAACCtt                                                                                                                                                                           <  1:1519176/269‑1 (MQ=255)
                                                                                                                               aTGACGGCGGAAGGTCACCTTCTCTTTTCTATTGCTTGTGCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAGTCTGCTGGCGGTATTTGCGCTGCTGGCAACCTTTTACCCTAAGGTTCCGGAAGGCTGGt                                                                                                                                                 <  2:197938/289‑1 (MQ=255)
                                                                                                                                      cggAAGGTCACCTTCTCTTTTCTATTGCTTGTGCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAGTCTGCTGGCGGTATTTGCGCTGCTGGCAACCTTTTACCTTAAGGTTCCGGAAGGCTGGTTCATTcc                                                                                                                                          >  1:1358379/1‑289 (MQ=255)
                                                                                                                                           ggTCACCTTCTCTTTTCTATTGCTTGTGCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATg                                                                                                                                                                                                                                                               >  1:3161354/1‑167 (MQ=255)
                                                                                                                                                ccTTCTCTTTTCTGTTGCTTGTGCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAGTCTGCTGGCGGTATTTGCGCTGCTGGCAACCTTTTACCTTAAGGTTCCGGAAGGCTGGTTCATTCCGGCTGATgcg                                                                                                                                <  1:240088/289‑1 (MQ=255)
                                                                                                                                                     tctTTTCTATTGCTTGTGCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAGTCTGCTGGCGGTATTTGCGCTGCTGGCAACCTTTTACCTTAAGGTTCCGGAAGGCTGGTTCATTCCGGCTGATGCGCTACa                                                                                                                           >  1:2342813/1‑289 (MQ=255)
                                                                                                                                                          tcaaTTGCTTGTGCGGTATTTGCCAAAAATGCCGAGCTGAAGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAGTCTGCTGGCGGTATTTGCGCTGCTGGCAACCTTTTACCTTAAGGTTCCGGAAGGCTGGTTCATTCCGGCTGATGCGCTACAAGGaa                                                                                                                      <  1:2761798/286‑1 (MQ=255)
                                                                                                                                                          tCTATTGCTTGTGCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAGTCTGCTGGCGGTATTTGCGCTGCTGGCAACCTTTTACCTTAAGGTTCCGGAAGGCTGGTTCATTCCGGCTGATGCGCTACAAGGaa                                                                                                                      <  1:2005523/289‑1 (MQ=255)
                                                                                                                                                           cTATTGCTTGTGCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAGTCTGCTGGCGGTATTTg                                                                                                                                                                                           <  1:145888/219‑1 (MQ=255)
                                                                                                                                                              ttGCTTGTGCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAGTCTGCTGGCGGTATTTGCGCTGCTGGCAACCTTTTACCTTAAGGTTCCGGAAGGCTGGTTCATTCCGGCTGATGCGCTACAAGGAATGGt                                                                                                                  >  2:3122460/1‑289 (MQ=255)
                                                                                                                                                              ttGCTTGTGCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAGTCTGCTGGCGGTATTTGCGCTGCTGGCAACCTTTTACCTTAAGGTTCCGGAAGGCTGGTTCATTCCGGCTGATGCGCTACAAGGAATGGt                                                                                                                  >  1:282194/1‑289 (MQ=255)
                                                                                                                                                               tGCTTGTGCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCTTATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAGTCTGCTGGCGGTATTTGCGCTGCTGGCAACCTTTTACCTTAAGGTTCCGGAAGGCTGGTTCATTCCGGCTGATGCGCTACAAGGAATGGTg                                                                                                                 <  2:1904278/289‑1 (MQ=255)
                                                                                                                                                               tGCTTGTGCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATg                                                                                                                                                                                                                                                               <  1:1986376/147‑1 (MQ=255)
                                                                                                                                                                 cTTGTGCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAGTCTGCTGGCGGTATTTGCGCTGCTGGCAACCTTTTACCTTAAGGTTCCGGAAGGCTGGTTCATTCCGGCTGATGCGCTACAAGGAATGGt                                                                                                                  >  1:586227/1‑286 (MQ=255)
                                                                                                                                                                   tgtgCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAGTCTGCTGGCGGTATTTGCGCTGCTGGCAACCTTTTACCTTAAGGTCCCGGAAGGCTGGTTCATTCCGGCTGATGCGCTACAAGGaa                                                                                                                      >  1:3098000/1‑280 (MQ=255)
                                                                                                                                                                     tgCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAGTCTGCTGGCGGTATTTgcg                                                                                                                                                                                         <  1:2789329/211‑1 (MQ=255)
                                                                                                                                                                     tgCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAGTCTGCTGGCGGTATTTgcg                                                                                                                                                                                         >  2:2789329/1‑211 (MQ=255)
                                                                                                                                                                          tATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTAcc                                                                                                                                                                                                                 <  2:1543984/182‑1 (MQ=255)
                                                                                                                                                                          tATGTGCCAAAAATGCCTGGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTGCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAGTCTGCTGGCGGTATTTGCGCTGCTGGCAACCTTTTACCTTAAGGTTCCGGAAGGCTGGTTCATTCCGGCTGATGCGCTACAAGGAATGGTGCTGGGTTAttt                                                                                                      <  2:1119044/289‑1 (MQ=255)
                                                                                                                                                                              ggCCAAAAATGCCGAGCGGACGCCCGGGCTGGCACAGGTGGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAGTCTGCTGGCGGTATTTGCGCTGCTGGCAACCTTTTACCTTAAGGTTCCGGAAGGCTGGTTCATTCCGGCTGATGCGCTACAAGGAATGGTGCTGGGTTATTTGAGc                                                                                                  <  2:166495/288‑1 (MQ=255)
                                                                                                                                                                               gCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCcgcg                                                                                                                                                                                                                                        <  1:878729/154‑1 (MQ=255)
                                                                                                                                                                               gCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAGTCTGCTGGCGGTATTTGCGCTGCTGGCAACCTTTTACCTTAAGGTTCCGGAAGGCTGGTTCATTCCGGCTGATgcg                                                                                                                                >  1:1327750/1‑258 (MQ=255)
                                                                                                                                                                               gCCAAAAATGCCGAGATGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAGTCTGCTGGCGGTATTTGCGCTGCTGGCAACCTTTTACCTTAAGGTTCCGGAAGGCTGGTTCATTCCGGCTGATGCGCTACAAGGAATGGTGCTGGGTTATTTGAGc                                                                                                  >  1:373784/1‑288 (MQ=255)
                                                                                                                                                                                    aaaTGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCg                                                                                                                                                                                                                           <  2:874059/162‑1 (MQ=255)
                                                                                                                                                                                    aaaTGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCg                                                                                                                                                                                                                           <  1:2583803/162‑1 (MQ=255)
                                                                                                                                                                                    aaaTGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAGTCTGCTGGCGGTATTTGCGCTGCTGGCAACCTTTTACCTTAAGGTTCCGGAAGGCTGGTTCATTCCGGCTGATGCGCTAc                                                                                                                            >  1:2095906/1‑257 (MQ=255)
                                                                                                                                                                                                        tGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAGTCTGCTGGCGGTATTTGCGCTGCTGGCAACCTTTTACCTTAAGGTTCCGGAAGGCTGGTTCATTCCGGCTGATGCGCTACAAGGAATGGTGCTGGGTTATTTGAGCCACATACTTGCCGATATGCTGacac                                                                         >  1:2992376/1‑288 (MQ=255)
                                                                                                                                                                                                         gcgggCACTGGGGTACTGTGGGCATGTTGTGCCTACGGTAATCCTGACGTGTTGGTTACCGGCATTCGATCACCCAAAGTCGTTTCTTGTGCAGCGCTTAAAATGGTTATCAAAACCGGCCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCTCAGTCTTCTGGCGGTATTTTGGCTGCTGGCAACCTTTTACCTTAAGGTTCCGGAAGGCTGGTTCATTCCGGCTGATGCGCTACAAGGAATGGGGCTGGGTTATTTGAGCCACATACTTGCCGATATGCTGACAcc                                                                        <  2:913305/285‑1 (MQ=255)
                                                                                                                                                                                                           tGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAGTCTGCTGGCGGTATTTGCGCTGCTGGCAACCTTTTACCTTAAGGTTCCGGAAGGCTGGTTCATTCCGGCTGATGCGCTACAAGGAATGGTGCTGGGTTATTTGAGCCACATACTTGCCGATATGCTGACACccgc                                                                     <  1:1702634/289‑1 (MQ=255)
                                                                                                                                                                                                             gCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCcg                                                                                                                                                                                                                                          <  1:762978/122‑1 (MQ=255)
                                                                                                                                                                                                                aaGGGGGACTGGTGGCATATTTTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAGTCTGCTGGCGGTATTTGCGCTGCTGGCAACCTTTTACCTTAAGGTTCCGGAAGGCTGGTTCATTCCGGCTGATGCGCTACAAGGAATGGTGCTGGGTTATTTGAGCCACATACTTGCCGATATGCTGACACCCGCCGgtg                                                                <  2:1329670/288‑1 (MQ=255)
                                                                                                                                                                                                                 ggggTCACTGTTGGCTTATTTTCCCTTTCGCAATCCTACCGTGTTTGTTACCGGACATCGATCACCCAAAGGCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGTTTTTACCCACAGTCTGCTGGCGGTATTTGCGCTGCTGGCAACCTTTTACCTTAAGGTTCCGGAAGGCTGGTTCATTCCGGCTGATGCGCTACAAGGAATGGTGCTGGGTTATTTGAGCCACATACTTGCCGATATGCTGACACCCGCCGgtg                                                                <  2:2411635/287‑1 (MQ=255)
                                                                                                                                                                                                                   ggTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAGTCTGCTGGCGGTATTTGCGCTGCTgg                                                                                                                                                                                  <  1:1173202/172‑1 (MQ=255)
                                                                                                                                                                                                                   ggTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAGTCTGCTGGCGGTATTTGCGCTGCTGGCAACCTTTTACCTTAAGGTTCCGGAAGGCTGGTTCATTCCGGCTGATGCGCTACAAGGaa                                                                                                                      >  2:248350/1‑232 (MQ=255)
                                                                                                                                                                                                                   ggTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAGTCTGCTGGCGGTATTTGCGCTGCTGGCAACCTTTTACCTTAAGGTTCCGGAAGGCTGGTTCATTCCGGCTGATGCGCTACAAGGAATGGTGCTGGGTTATTTGAGCCACATACTTGCCGATATGCTGACACCCGCCGGTGtt                                                              >  1:1944743/1‑288 (MQ=255)
                                                                                                                                                                                                                             ggCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATCTCAAAACCGATCGCCCGCGCTTTTGGGCATCGTCGTTTTACCCACAATCTGCTGGCGGTATTTGCGCTGCTGGCAACCTTTTACCTTACGGTTCCGGAATGCTGGTTCATTCCGGCTGATGCGCTACATGTCATGGTGCTGGGCTATTGGATCCACATACTTGCCGATATGCTGCCACCCCCCGGGTTTccccccct                                                      >  2:2379099/1‑282 (MQ=255)
                                                                                                                                                                                                                             ggCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCg                                                                                                                                                                                                                           >  1:417754/1‑121 (MQ=255)
                                                                                                                                                                                                                             ggCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAGTCTGCTGGCGGTATTTGCGCTGCTGGCAACCTTTTACCTTAAGGTTCCGGAAGGCTGGTTCATTCCGGCTGATGCGCTACAAGGAATGGTGCTGGGTTATTTGAGCCACATACTTGCCGat                                                                                   >  2:2112237/1‑257 (MQ=255)
                                                                                                                                                                                                                                      tCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAg                                                                                                                                                                                                                                                                          <  1:599262/65‑1 (MQ=255)
                                                                                                                                                                                                                                      tCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAg                                                                                                                                                                                                                                                                          >  2:599262/1‑65 (MQ=255)
                                                                                                                                                                                                                                           tCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAGTCTGCTGGCGGTATTTGCGCTGCTGGCAACCTTTTACCTTAAGGTTCCGGAAGGCTGGTTCATTCCGGCTGATGCGCTa                                                                                                                             >  1:2956014/1‑201 (MQ=255)
                                                                                                                                                                                                                                            ccGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAGTCTGCTGGCGGTATTTGCGCTGCTGGCAACCTTTTACCTTAAGGTTCCGGAAGGCTGGTTCATTCCGGCTGATGCGCTACAAGGAATGGTGCTGGGTTATTTGAGCCAAATACTTGCCGATATGCTGACACCCGCCTGTGTTCCCCTTGTCTTGCCATGCCCCTGGCg                                    >  2:719380/1‑289 (MQ=255)
                                                                                                                                                                                                                                                  tcttGACGTGTTTGTTACCGGACATCGATCCCCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTGGGGCATCGTGGTTTTACCCACAGTCTGCTGGCGGTATTTGCGCTGCTGGCAACCTTTGACCTTAAGGTTCCGGAAGGCTGGTTCATTCCGGCTGATGCGCTACAAGGAATGGTGCTGGGTTATTTGAGCCACATACTTGCCGATATGCTGACACCCGCCGGTGTTCCCCTGCTCTGGc                                                 <  1:303719/267‑1 (MQ=255)
                                                                                                                                                                                                                                                  tCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAGTCTGCTGGCGGTATTTGCGCTGCTGGCAACCTTTTACCTTAAGGTTCCGGAAGGCTGGTTCATTCCGGCTGATGCGCTACAAGGAATGGTGCTGGGTTATTTGAGCCACATACTTGCCGATATGCTGACACCCGCCGGTGTTCCCCTGCTCTGGCCATGCCGCTGGCGTTTCCg                              <  2:2644988/289‑1 (MQ=255)
                                                                                                                                                                                                                                                  tCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAGTCTGCTGGCGGTATTTGCGCTGCTGGCAACCTTTTACCTTAAGGTTCCGGAAGGCTGGTTCATTCCGGCTGATGCGCTACAAGGAATGGTGCTGGGTTATTTGAGCCACATACTTGCCGATATGCTGACACCCGCCGGTGTTCCCCTGCTCTGGCCATGCCGCTGGCGTTTCCg                              <  1:3126943/289‑1 (MQ=255)
                                                                                                                                                                                                                                                        cGTGTTTGTTACCGTAATTCGGTCACCCAAAGGCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGTTCGCCCGCGCTTTTGGGCATCGTGTTTTTACCCACAGTCTGCTGGCGGTATTTGCGCTGCTGGCAACCTTTTACCTTAAGGTTCCGGAAGGCTGGTTCATTCCGGCTGATGCGCTACAAGGAATGGTGCTGGGTTATTTGAGCCACATACTTGCCGATATGCTGACACCCGCCGGTGTTCCCCTGCTCTGGCCATGCCGCTGGCGTTTCCGCTTGc                         <  2:2128815/288‑1 (MQ=255)
                                                                                                                                                                                                                                                            tttgttACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAGTCTGCTGGCGGTATTTGCGCTGCTGGCAACCTTTTACCTTAAGGTTCCGGAAGGCTGGTTCATTCCGGCTGATGCGCTACAAGGAATGGTGCTGGGTTATTTGAGCCACATACTTGCCGATATGCTGACACCCGCCGGTGTTccc                                                           >  1:673061/1‑250 (MQ=255)
                                                                                                                                                                                                                                                            tttgttACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAGTCTGCTGGCGGTATTTGCGCTGCTGGCAACCTTTTACCTTAAGGTTCCGGAAGGCTGGTTCATTCCGGCTGATGCGCTACAAGGAATGGTGCTGGGTTATTTGAGCCACATACTTGCCGATATGCTGACACCCGCCGGTGTTccc                                                           <  2:673061/250‑1 (MQ=255)
                                                                                                                                                                                                                                                            tttgttACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCGTTTGGGCATCGTGGTTTTACCCACAGTCTGCTGCCGGTATTTGCGCTGCTGGCAACCTTTTACCTTAAGGTTCCGGAAGGCTGTTTCATTCCGGCTGATTCGCTACAAGGAATGGTGCTGTGTTATTTGAGCCACAGACTTGCCGATATGCTGACCCCGTCCGGTGTGCCCCTGCTCTGGCCATGCCGCTGGCGTTTCCGCTCGCCTAt                     >  2:2272351/1‑288 (MQ=255)
                                                                                                                                                                                                                                                            tttgttACCGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATCAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAGTCTGCTGGCGGTATTTGCGCTGCTGGCAACCTTTTACCTTAAGGTTCCGGAAGGCTGGTTCATTCCGGCTGATGCGCTACAAGGAATGGTGCTGGGTTAATTGACCCACATACTTGCCGATATGATGACACCCGCCGGTGTTCCCCGCCTCTGGCCATGCCTCTGGCGTTTCCGCTTGCCTAt                     >  2:492104/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                    cGGACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAGTCTGCTGGCGGTATTTGCGCTGCTGGCAACCTTTTACCTTAAGGTTCCGGAAGGCTGGTTCATTCCGGCTGATGCGCTACAAGGAATGGTGCTGGGTTATTTGAGCCACATACTTGCCGATATGCTGACACCCGCCGGTGTTCCCCTGCTCTGGCCATGCCGCTGGCGTTTCCGCTTGCCTATCCTGGTTc             >  2:2065811/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                      gACATCGATCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAGTCTGCTGGCGGTATTTGCGCTGCTGGCAACCTTTTACCTTAAGGTTCCGGAAGGCTGGTTCATTCCGGCTGATGCGCt                                                                                                                              >  1:2124682/1‑173 (MQ=255)
                                                                                                                                                                                                                                                                             aTCACCCAAAGTCGTTTCTTGGGCAGCGATTAAAATGGATATCAAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAGTCTGCTGGCGGTATTTGCGCTGCTGGCAACCTTTTACCTTAAGGTTCCGGAAgg                                                                                                                                                      >  2:3026570/1‑142 (MQ=255)
                                                                                                                                                                                                                                                                                        |||                                                                                                                                                                                                                                                                                    
TTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAGTTACACCGTCACCACTTCCGTGCACTGTATAAAAATCCTATACTGTACGTATCGACAGTTTAGTGAGTTTTATCATGACGGCGGAAGGTCACCTTCTCTTTTCTATTGCTTGTGCGGTATTTGCCAAAAATGCCGAGCTGACGCCCGTGCTGGCACAGGGTGACTGGTGGCATATTGTCCCTTCCGCAATCCTGACGTGTTTGTTACCGGACATCGATCACCCAAAGAGCTTTCTTGGGCAGCGATTAAAATGGATAAGTAAACCGATCGCCCGCGCTTTTGGGCATCGTGGTTTTACCCACAGTCTGCTGGCGGTATTTGCGCTGCTGGCAACCTTTTACCTTAAGGTTCCGGAAGGCTGGTTCATTCCGGCTGATGCGCTACAAGGAATGGTGCTGGGTTATTTGAGCCACATACTTGCCGATATGCTGACACCCGCCGGTGTTCCCCTGCTCTGGCCATGCCGCTGGCGTTTCCGCTTGCCTATCCTGGTTCCCCAAAAGGGC  >  CP042583/1492035‑1492593

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A