Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F210 I1 R1 4928 368.7 6392010 97.5% 6232209 231.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,512,674 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,512,6740GC100.0% 729.8 / NA 311intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base C (159/152);  total (159/152)
*CP0425831,512,6750CG99.7% 734.3 / NA 311intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/0);  major base G (159/151);  minor base T (0/1);  total (159/152)
Fisher's exact test for biased strand distribution p-value = 4.89e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,512,6760TA98.4% 726.1 / NA 311intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base A (155/150);  minor base C (4/1);  total (159/152)
Fisher's exact test for biased strand distribution p-value = 3.72e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 311 total aligned reads displayed.

GCTCGCTGCTGCCGGTGTGATCGTTACTGAGAAACAGCGTCGGCAATGCGTTATAGACATTCAGCTCTTTACTGGCGTGAACCAACGTGCCGACGCGATAGTTGTACCAGGGATCGTTCAGCCCAACCGCCACCTCAATGGCACAAATCCCCGCCACGGTGCCTGTCTCGCTATCTTCCAGCACGAACACATAGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCGCTAAGCGTGGCTTCATTGGCGGGAAGGCTCGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCGCTGACATCACTTCGCTCAACGGGACGGATGACCATCATGATGAACCTCGGCTAACAAATTATTTCAACTACTACCTCGGCTAACAAAGTGTTCGCAAGCAGCTGCAAAGCGATCCAGTCCGGTCGTCACCTCTTCTTCGCTGACATTGAGCGCAGGCGCAAAACGCACCACGTTGCCACCCGCAATCAGTACCATCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCT  >  CP042583/1512394‑1512954
                                                                                                                                                                                                                                                                                        |||                                                                                                                                                                                                                                                                                      
         tgcCGGTGTGATCGTTACTGAGAAACAGCGTCGGCAATGCGTTATAGACATTCAGCTCTTTTGAGGCGTGAACCAACGTGCCGACGCGATAGTTGTACCAGGGATCGTTCAGCCCAACCGCCACCTCAATGGCACAAATCCCCGCCACGGTGCCTGTCTCGCTATCTTCCAGCACGAACACATAGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGgccgccgc                                                                                                                                                                                                                                                                          >  2:2152117/1‑288 (MQ=255)
                tgcttgggtACTGAGAACCAGAGTCGCCACTGCGTTATAGCCATGCAGCGCTTTGGGGGCGTGAACCACCGTGCCGACGCGATAGTTGTACCAGGGATCGTTCAGCCCAACCGCCACCTCAATGGCACAAATCCCCGCCACGGTGCCTGTCTCGCTATCTTCCAGCACGAACACATAGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGtttt                                                                                                                                                                                                                                                                   <  2:671200/280‑1 (MQ=255)
                    tCGTTACTGGGAAACAGCGTCGGCAATGCGTTATAGACATTCAGCTCTTTTGAGGCGTGAACCAACGTGCCGACGCGATAGTTGTACCAGGGATCGTTCAGCCCAACCGCCACCTCAATGGCACAAATCCCCGCCACGGTGCCTGTCTCGCTATCTTCCAGCACGAACACATAGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTgg                                                                                                                                                                                                                                                              <  1:2180733/289‑1 (MQ=255)
                      gTTACTGAGAAACAGCGTCGGCAATGCGTTATAGACATTCAGCTCTTTTGAGGCGTGAACCAACGTGCCGACGCGATAGTTGTACCAGGGATCGTTCAGCCCAACCGCCACCTCAATGGCACAAATCCCCGCCACGGTGCCTGTCTCGCTATCTTCCAGCACGAACACATAGCCCTGCCCACTTTTGGGCAGTTCGTCTTGCCAGGTTTTGATTGCTCTTTCGCTACGCGCCGAAAGCGTGGCTTCGTGGGCTGGATGCGACGTCAGGACGCCGCCCGTTTTCCTggac                                                                                                                                                                                                                                                            >  2:1328031/1‑287 (MQ=255)
                               aaaCAGCGTCGGCAATGCGTTATAGACATTCAGCTCTTTTGAGGCGTGAACCAACGTGCCGACGCGATAGTTGTACCAGGGATCGTTCAGCCCAACCGCCACCTCAATGGCACAAATCCCCGCCACGGTGCCTGTCTCGCTATCTTCCAGCACGAACACATAGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCCTTTTTGTGGCAAgactcctc                                                                                                                                                                                                                                                   >  2:492777/1‑282 (MQ=255)
                                     cGTCGGCAATGCGTTATAGACATTCAGCTCTTTTGAGGCGTGAACCAACGTGCCGACGCGATAGTTGTACCAGGGATCGTTCAGCCCAACCGCCACCTCAATGGCACAAATCCCCGCCACGGTGCCTGTCTCGCTATCTTCCAGCACGAACACATAGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCCGGCCGCCGCCCGTTTTGCTGGCATGCTGCATCAgcccc                                                                                                                                                                                                                                             >  2:2509352/1‑286 (MQ=255)
                                     cGTCGGCAATGCGTTATAGACATTCAGCTCTTTTGAGGCGTGAACCAACGTGCCGACGCGATAGTTGTACCAGGGATCGTTCAGCCCAACCGCCACCTCAATGGCACAAATCCCCGCCACGGTGCCTGTCTCGCTATCTTCCAGCACGAACACATAGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGTCCGCCGCCCCTTTTGCCGGCAAGTCGCATCAgcgcc                                                                                                                                                                                                                                             >  2:3045519/1‑288 (MQ=255)
                                       tCGGCAATGCGTTATAGACATTCAGCTCTTTTGAGGCGTGAACCAACGTGCCGACGCGATAGTTGTACCAGGGATCGTTCAGCCCAACCGCCACCTCAATGGCACAAATCCCCGCCACGGTGCCTGTCTCGCTATCTTCCAGCACGAACACATAGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAgcgccga                                                                                                                                                                                                                                           >  1:638910/1‑286 (MQ=255)
                                       ccGGCGATGCCTTATAGACACGCAACGCTTTTGGGGCGTGACCCACCGTGTCGGCGGGATAGTTGTACCAGGGCGCGTTCAGCCCAACCGCCACCTCAATGGCACAAATCCCCGCCACGGTGCCTGTCTCGCTATCTTCCAGCACGAACACATAGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAgcgccg                                                                                                                                                                                                                                            <  2:3116477/287‑3 (MQ=255)
                                               gCGTTATAGACATTCAGCTCTTTTGAGGCGTGAACCAACGTGCCGACGCGATAGTTGTACCAGGGATCGTTCAGCCCAACCGCCACCTCAATGGCACAAATCCCCGCCACGGTGCCTGTCTCGCTATCTTCCAGCACGAACACATAGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAgcg                                                                                                                                                                                                                                               >  1:853115/1‑277 (MQ=255)
                                                  ttATAGACATTCAGCTCTTTTGAGGCGTGAACCAACGTGCCGACGCGATAGTTGTACCAGGGATCGTTCAGCCCAACCGCCACCTCAATGGCACAAATCCCCGCCACGGTGCCTGTCTCGCTATCTTCCAGCACGAACACATAGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAgcgccg                                                                                                                                                                                                                                            <  1:1443452/277‑3 (MQ=255)
                                                   tataGACATTCAGCTCTTTTGAGGCGTGAACCAACGTGCCGACGCGATAGTTGTACCAGGGATCGTTCAGCCCAACCGCCACCTCAATGGCACAAATCCCCGCCACGGTGCCTGTCTCGCTATCTTCCAGCACGAACACATAGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTTGCAAGCTGCATCAGCGCCGAGACATctgatc                                                                                                                                                                                                                                >  1:2804711/1‑283 (MQ=255)
                                                   tataGACATTCAGCTCTTTTGAGGCGTGAACCAACGTGCCGACGCGATAGTTGTACCAGGGATCGTTCAGCCCAACCGCCACCTCAATGGCACAAATCCCCGCCACGGTGCCTGTCTCGCTATCTTCCAGCACGAACACATAGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATctgatcg                                                                                                                                                                                                                               <  1:1646672/289‑7 (MQ=255)
                                                         cATTCAGCTCTTTTGAGGCGTGAACCAACGTGCCGACGCGATAGTTGTACCAGGGATCGTTCAGCCCAACCGCCACCTCAATGGCACAAATCCCCGCCACGGTGCCTGTCTCGCTATCTTCCAGCACGAACACATAGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCaa                                                                                                                                                                                                                          <  1:2226417/288‑1 (MQ=255)
                                                          aTTCAGCTCTTTTGAGGCGTGAACCAACGTGCCGACGCGATAGTTGTACCAGGGATCGTTCAGCCCAACCGCCACCTCAATGGCACAAATCCCCGCCACGGTGCCTGTCTCGCTATCTTCCAGCACGAACACATAGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAgcgccg                                                                                                                                                                                                                                            >  1:109274/1‑267 (MQ=255)
                                                          aTTCAGCTCTTTTGAGGCGTGAACCAACGTGCCGACGCGATAGTTGTACCAGGGATCGTTCAGCCCAACCGCCACCTCAATGGCACAAATCCCCGCCACGGTGCCTGTCTCGCTATCTTCCAGCACGAACACATAGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAgcgccg                                                                                                                                                                                                                                            <  2:109274/269‑3 (MQ=255)
                                                            tCAGCTCTTTTGAGGCGTGAACCAACGTGCCGACGCGATAGTTGTACCAGGGATCGTTCAGCCCAACCGCCACCTCAATGGCACAAATCCCCGCCACGGTGCCTGTCTCGCTATCTTCCAGCACGAACACATAGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTTGCAAGCTTCCTCATCGCCGTGCCCTCTGATCGCTCAACggg                                                                                                                                                                                                                      >  2:1646672/1‑289 (MQ=255)
                                                             cAGCTCTTTTGAGGCGTGAACCAACGTGCCGACGCGATAGTTGTACCAGGGATCGTTCAGCCCAACCGCCACCTCAATGGCACAAATCCCCGCCACGGTGCCTGTCTCGCTATCTACCAGCACGAACACATAGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGa                                                                                                                                                                                                                     <  1:560520/289‑1 (MQ=255)
                                                                     ttgaggCGTGAACCAACGTGCCGACGCGATAGTTGTACCAGGGATCGTTCAGCCCAACCGCCACCTCAATGGCACAAATCCCCGCCACGGTGCCTGTCTCGCTATCTTCCAGCACGAACACATAGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGATGAc                                                                                                                                                                                                             <  1:1466329/285‑1 (MQ=255)
                                                                         gccGTGAACCAACGTGCCGCCGCGATAGTTGTACCAGGGATCGTTCAGCCCAACCGCCACCTCAATGGCACAAATCCCCGCCACGGTGCCTGTCTCGCTATCTTCCAGCACGAACACATAGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGATGACcat                                                                                                                                                                                                          <  1:426981/286‑1 (MQ=255)
                                                                             tGAACCAACGTGCCGACGCGATAGTTGTACCAGGGATCGTTCAGCCCAACCGCCACCTCAATGGCACAAATCCCCGCCACGGTGCCTGTCTCGCTATCTTCCAGCACGAACACATAGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCGCAACGGGACGGATGACCATCatga                                                                                                                                                                                                     >  2:928489/1‑289 (MQ=255)
                                                                               aaCCAACGTGCCGACGCGATAGTTGTACCAGGGATCGTTCAGCCCAACCGCCACCTCAATGGCACAAATCCCCGCCACGGTGCCTGTCTCGCTATCTTCCAGCACGAACACATAGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCCTCAGCGCCGAGACATCTGATCGCCCAACGGGACCGATGACCCTCatgatg                                                                                                                                                                                                   >  2:1466329/1‑289 (MQ=255)
                                                                                  caccgtgCCGACGCTATAGTTGTACCAGGGATCGTTCAGCCCAACCGCCACCTCAATGGCACAAATCCCCGCCACGGTGCCTGTCTCGCTATCTTCCAGCACGAACACATAGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGATGACCATCATGATGAAC                                                                                                                                                                                                <  1:1944101‑M1/286‑1 (MQ=255)
                                                                                   caCGTGCCGTCGAGATATTGGTACCCGGGCCCACGCAGCCCAACCCCACCCCCCACGGCACAACACCCGGCCACGGTGCCTTGCTCGTTATCTTCCAGCACGAACACATAGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGATGACCATCATGATGAAcc                                                                                                                                                                                               <  2:1295038/288‑1 (MQ=255)
                                                                                     cgcgccgccggaatagttggaccagGCGTCCATCCGGCCAACCGCCACCTCAATGGCACAAATCCCCGCCACGGTGCCTGTCTCGCTATCTTCCAGGACGAAGACATAGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGGTCCGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGATGACCATCATGATGAACCTC                                                                                                                                                                                             <  2:1346879‑M1/277‑1 (MQ=255)
                                                                                     cGTGCCGACGCGATAGTTGTACCAGGGATCGTTCAGCCCAACCGCCACCTCAATGGCACAAATCCCCGCCACGGTGCCTGTCTCGCTATCTTCCAGCACGAACACATAGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATctgat                                                                                                                                                                                                                                 <  1:987521/253‑5 (MQ=255)
                                                                                        gCCGGCGCGATAGTTGTACCCGGGATCTGTCAGCCCAACCGCCACCTCAATGGCACAAATCCCCGCCACGGTGCCTGTCTCGCTATCTTCCAGCACGAACACATAGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGATGACCATCATGATGAACCTCGG                                                                                                                                                                                           <  2:1217823‑M1/288‑1 (MQ=255)
                                                                                             cgcgATAGTTGTACCAGGGATCGTTCAGCCCAACCGCCACCTCAATGGCACAAATCCCCGCCACGGTGCCTGTCTCGCTATCTTCCAGCACGAACACATAGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATctgat                                                                                                                                                                                                                                 >  1:3063351/1‑241 (MQ=255)
                                                                                                          ccAGGGATCGTTCAGCCCAACCGCCACCTCAATGGCACAAATCCCCGCCACGGTGCCTGTCTCGCTATCTTCCAGCACGAACACATAGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGATGACCATCATGATGAACCTCGGCTAACAAAgtgttcgcaag                                                                                                                                                                        <  1:2029932‑M1/289‑12 (MQ=255)
                                                                                                            aGGGATCGTTCAGCCCAACCGCCACCTCAATGGCACAAATCCCCGCCACGGTGCCTGTCTCGCTATCTTCCAGCACGAACACATAGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAgcgccg                                                                                                                                                                                                                                            >  2:2764886/1‑217 (MQ=255)
                                                                                                              ggATCGTTCAGCCCAACCGCCACCTCAATGGCACAAATCCCCGCCACGGTGCCTGTCTCGCTATCTTCCAGCACGAACACATAGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAgcgccga                                                                                                                                                                                                                                           >  1:2275781/1‑215 (MQ=255)
                                                                                                                  cGTTCAGCCCAACCGCCACCTCAATGGCACAAATCCCCGCCACGGTGCCTGTCTCGCTATCTTCCAGCACGAACACATAGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCCCAACCGGACGGATCACCATCATGATTGACCTCGGCTAACAAAgtgttcgcaagcagctgc                                                                                                                                                                 >  2:37446‑M1/1‑270 (MQ=255)
                                                                                                                    ttCAGCCCAACCGCCACCTCAATGGCACAAATCCCCGCCACGGTGCCTGTCTCGCTATCTTCCAGCACGAACACATAGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGAt                                                                                                                                                                                                                >  1:2059286/1‑239 (MQ=255)
                                                                                                                     tCAGCCCAACCGCCACCTCAATGGCACAAATCCCCGCCACGGTGCCTGTCTCGCTATCTTCCAGCACGAACACATAGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGATGACCATCATGATGAACCTCGGCTAACAAAgtgttcgcaagcagctgcaaag                                                                                                                                                             <  1:1081532‑M1/289‑23 (MQ=255)
                                                                                                                         cccAACCGCCACCTCAATGGCACAAATCCCCGCCACGGTGCCTGTCTCGCTATCTTCCAGCACGAACACATAGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGAt                                                                                                                                                                                                                >  1:3159280/1‑234 (MQ=255)
                                                                                                                              ccGCCACCTCAATGGCACAAATCCCCGCCACGGTGCCTGTCTCGCTATCTTCCAGCACGAACACATAGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCAt                                                                                                                                                                                                                                                    <  1:152977/193‑1 (MQ=255)
                                                                                                                                   aCCTCAATGGCACAAATCCCCGCCACGGTGCCTGTCTCGCTATCTTCCAGCACGAACACATAGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAgcgc                                                                                                                                                                                                                                              <  1:2311753/194‑1 (MQ=255)
                                                                                                                                   aCCTCAATGGCACAAATCCCCGCCACGGTGCCTGTCTCGCTATCTTCCAGCACGAACACATAGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAgcgc                                                                                                                                                                                                                                              >  2:2311753/1‑194 (MQ=255)
                                                                                                                                   aCCTCAATGGCACAAATCCCCGCCACGGTGCCTGTCTCGCTATCTTCCAGCACGAACACATAGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGATGACCATCATGATGAACCTCGGCTAACAAAgtgttcgca                                                                                                                                                                          <  2:361975‑M1/262‑10 (MQ=255)
                                                                                                                                      tccagggcacaaATCCCCGCACCGGTGCCTGTCTCGCTATCTTCCAGCACGAACACATAGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGATGACCATCATGATGAACCTCGGCTAACAAAgtgttcgcaagcagctgcaaagcgatccagtccggtcgt                                                                                                                                            <  2:2562054‑M1/284‑40 (MQ=255)
                                                                                                                                               caAATCCCCGCCACGGTGCCTGTCTCGCTATCTTCCAGCACGAACACATAGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCCTCAGCGCCGAGACCTCTGATCGCCCAACGGGACGGATGACCACCATGATGAACCTCGGCTAACAAAgtgttcgcacgcagctgcaaagccatccagtccggtcttcacctctt                                                                                                                                    >  2:1766817‑M1/1‑241 (MQ=255)
                                                                                                                                                 aaTCCCCGCCACGGTGCCTGTCTCGCTATCTTCCAGCACGAACACATAGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGATGACCATCATGATGAACCTCGGCTAACAAAgtgttcgcaagcagctgcaaagcgatccagtccggtcgtcacctcttctt                                                                                                                                 <  1:509296‑M1/289‑51 (MQ=255)
                                                                                                                                                  aTCCCCGCCACGGTGCCTGTCTCGCTATCTTCCAGCACGAACACATAGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAgcgccga                                                                                                                                                                                                                                           <  1:2696949/182‑4 (MQ=255)
                                                                                                                                                     cccGCCCCGGTGCCTGTCTCGCTATCTTCAGGCACGAACACAGAGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGATGACCATCATGATGAACCTCGGCTAACAAAgtgttcgcaagcagctgcaaagcgatccagtccggtcgtcacctcttcttcgct                                                                                                                             <  2:1046183‑M1/289‑55 (MQ=255)
                                                                                                                                                                gCCTGTCTCGCTATCTTCCAGCACGAACACATAGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGATGACCATCATGATGAACCTCGGCTAACAAAgtgttcgcaagcagctgcaaagcgatccagtccggtcgtcacctcttcttcgctgacattgagcg                                                                                                                  <  1:364120‑M1/289‑66 (MQ=255)
                                                                                                                                                                           tATCTTCCAGCACGAACACATAGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGATGACCATCATGATGAACCTCGGCTAACAAAgtgttcgcaagcagctgcaaagcgatccagtccggtcgtcacctcttcttcgctgacattgagcgcaggcgcaaa                                                                                                        <  1:2152117‑M1/288‑76 (MQ=255)
                                                                                                                                                                               ttCCGGCACGAAACCATGGCCCTGCTCACTGTTGGGCAGGTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGATGACCATCATGATGAACCTCGGCTAACAAAgtgttcgcaagcagctgcaaagcgatccagtccggtcgtcacctcttcttcgctgacattgagcgcaggcgcaaaacgca                                                                                                   <  2:1147341‑M1/289‑81 (MQ=255)
                                                                                                                                                                               ttCCAGCACGAACACATAGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAgcgccgaga                                                                                                                                                                                                                                         >  2:759533/1‑150 (MQ=255)
                                                                                                                                                                               ttCCAGCACGAACACATAGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGATGACCATCATGATGAACCTCGGCTAACAAAgtgttcgcaagcagctgcaaagcgatccagtccggtcgtcacctcttcttcgctgacattgagcgcaggcgcaaaacgc                                                                                                    >  1:781266‑M1/1‑209 (MQ=255)
                                                                                                                                                                               ttCCAGCACGAACACATAGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGATGACCATCATGATGAACCCCGGCTAACAAAgtgttcgcaagcagctgcaaagcgatccagtccggtcgtcccctcttcttcgctgacattgagccgaggcccaaaacgc                                                                                                    >  2:947714‑M1/1‑209 (MQ=255)
                                                                                                                                                                                 cgagcACGGACACATAGCCCTTCTCACTTGTGGGTGGGTCGCCGTGCCCGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGCGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGATGACCATCATGATGAACCTCGGCTAACAAAgtgttcgcaagcagctgcaaagcgatccagtccggtcgtcacctcttcttcgctgacattgagcgcaggcgcaaaacgcacc                                                                                                 <  2:638910‑M1/287‑83 (MQ=255)
                                                                                                                                                                                     cACGAACACATAGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCCACGGGACGGATGACCAACATGATGAACCTCGGCTAACAAAgttttcgcaagcagccgcaaagcgatccaatccggtccgcacctctttttcgctgacatttagcgcaggcgcaaaacccaccccgt                                                                                             >  2:2397649‑M1/1‑203 (MQ=255)
                                                                                                                                                                                     cACGAACACATAGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGATGACCATCATGATGAACCTCGGCTAACAAAgtgttcgcaagcagctgcaaagcaatccagtccggtcgtcaccccttcttcgctggcatctagcgcaggcgcaaaacgcaccacg                                                                                              >  2:299102‑M1/1‑203 (MQ=255)
                                                                                                                                                                                       cGAACACATAGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGATGACCATCATGATGAACCTCGGCTAACAAAgtgttcgcaagcagctgcaaagcgatccagtccggtcgtcacctcttcttcgctgacattgagcgc                                                                                                                 <  1:737666‑M1/267‑67 (MQ=255)
                                                                                                                                                                                        gAACACATAGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGATGACCATCATGATGAACCTCGGCTAACAAAgtgttcgcaagcagctgcaaagcgatccagtccggtcgtcacctcttcttcgctgacattgagcgcaggcgcaaaacgcaccacgttgc                                                                                          <  1:3002695‑M1/289‑90 (MQ=255)
                                                                                                                                                                                            acaTAGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGATGACCATCATGATGAACCTCGGCTAACAAAgtgttcgcaagcagctgcaaagcgatccagtccggtcgtcacctcttcttcgctgacattgagcgcaggcgcaaaacgcaccacgttgccacc                                                                                      <  1:1766817‑M1/289‑94 (MQ=255)
                                                                                                                                                                                             caTAGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGATGACCATCATGATGAACCTCGGCTAACAAAgtgttcgcaagcagctgcaaagcgatccagtccggtcgtcacctcttcttcgctgacattgagcgcaggcgcaaaacgcaccacgttgccaccc                                                                                     <  1:1151198‑M1/289‑95 (MQ=255)
                                                                                                                                                                                               tAGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGATGACCATCATGATGAACCCCGGCTAACAAAgtgttcgcaagcagctgcaaagcgatccagtccggtcgtcacctcctcttcgctcacatttagcgcaggcgccaaacccaccacgttgccacccc                                                                                    >  2:1501605‑M1/1‑193 (MQ=255)
                                                                                                                                                                                                aGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGATGACca                                                                                                                                                                                                           >  2:1747058/1‑168 (MQ=255)
                                                                                                                                                                                                aGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGATGACca                                                                                                                                                                                                           <  1:1747058/168‑1 (MQ=255)
                                                                                                                                                                                                aGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGATGACCATCATGATGAACCTCGGCTAACAAAgtgttcgcaagcagctgcaaagcgatccagtccggtcgtcacctcttcttcgctgacattgagcgcaggcgcaaaacgcaccacgttgccacccgca                                                                                  <  1:1674975‑M1/289‑98 (MQ=255)
                                                                                                                                                                                                aGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGATGACCATCATGATGAACCTCGGCTAACAAAgtgttcgcaagcagctgcaaagcgatccagtccggtcgtcacctcttcttcgctgacattgagcgcaggcgcaaaacgcaccacgttgccacccgca                                                                                  <  1:2847519‑M1/289‑98 (MQ=255)
                                                                                                                                                                                                  cccTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCAGCCGCCCGTTTTTCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGCCGGATGACCATCATGATGAACCCCGGCTAACACAgtgttcgcaagcagctgcaaagcgatacagtccggtcgtcaccgcttcttcgctagcattgagcccagcggccaaacgcaccaagtttccacccgcaa                                                                                 >  2:2471438‑M1/1‑190 (MQ=255)
                                                                                                                                                                                                   ccTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGATGACCATCATGATGAACCTCGGCTAACAAAgtgttcgcaagcagctgcaaagcgatccagtccggtcgtcacctcttcttcgctgacattgagcgcaggcgcaaaacgcaccacgttgccacccgcaat                                                                                <  1:2005372‑M1/288‑100 (MQ=255)
                                                                                                                                                                                                    cTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGATGACCATCATGATGAACCTCGGCTAACAAAgagttcgcaagcagctgcaaagcgatccagtccggtcgtcacctcttcttcgctgacattgagcgcaggcgcaaaacgcaccacgttgccacccgcaatca                                                                              >  1:1210594‑M1/1‑188 (MQ=255)
                                                                                                                                                                                                     tGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGATGACCATCATGATGAACCTCGGCTAACAAAgtgttcgcaagcagctgcaaagcgatccagtccggtcgtcacctcttcttcgctgacattgagcgcaggcgcaaaacgcaccacgttgccacccg                                                                                    <  2:1997842‑M1/282‑96 (MQ=255)
                                                                                                                                                                                                      gCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACggg                                                                                                                                                                                                                      <  1:2342676/151‑1 (MQ=255)
                                                                                                                                                                                                      gCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACggg                                                                                                                                                                                                                      >  2:2342676/1‑151 (MQ=255)
                                                                                                                                                                                                      gCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGa                                                                                                                                                                                                                     >  1:436797/1‑152 (MQ=255)
                                                                                                                                                                                                      gCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGATGACCATCCTGATGAACCTCGGCTAACAAAgtgtttgcaagcagctgcacagcgatccagtccgggcgtcccctcttcttcgctgaccttgagcgacggcgcaaaacgcaccacgttgccacccgcaatcag                                                                             >  2:2618363‑M1/1‑186 (MQ=255)
                                                                                                                                                                                                      gCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGATGACCATCATGATGAACCTCGGCTAACAAAgtgttcgcaagcagctgcaaagcgatccagtccggtcgtcacctcttcttcgctgacattgagcgcaggcgcaaaacccaccacgttgccaaccgcaatcatt                                                                            >  2:1552458‑M1/1‑186 (MQ=255)
                                                                                                                                                                                                      gCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGATGACCATCATGATGAACCTCGGCTAACAAAgtgttcgcaagcagctg                                                                                                                                                                  >  2:584740‑M1/1‑186 (MQ=255)
                                                                                                                                                                                                       cTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGAt                                                                                                                                                                                                                >  2:433118/1‑156 (MQ=255)
                                                                                                                                                                                                       cTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGATGACCATCatgat                                                                                                                                                                                                    >  1:933622/1‑168 (MQ=255)
                                                                                                                                                                                                       cTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGATGACCATCATGATGAACCTCGGCTAACAAAgtgttcgcaagcagctgcaaagcgatccagtccggtcgccacctcttcttcgctgacattgagcgcaggcgcaaaaagcaccacgttgccacccgcaatcagt                                                                            >  1:1355647‑M1/1‑185 (MQ=255)
                                                                                                                                                                                                          aCTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGATGACCATCATGATGAACCTCGGCTAACAAAgtgttcgcaagcagctgcaaagcgatccagtccggtcgtcacctcttcttcgctgacattgagcgcaggcgcaaaacgcaccacgttgccacccgca                                                                                  <  1:3169436‑M1/279‑98 (MQ=255)
                                                                                                                                                                                                            ttttGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGc                                                                                                                                                                                                                                                         >  1:1322936/1‑110 (MQ=255)
                                                                                                                                                                                                            ttttGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGAt                                                                                                                                                                                                                >  1:1583637/1‑151 (MQ=255)
                                                                                                                                                                                                            ttttGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGAt                                                                                                                                                                                                                <  2:1583637/151‑1 (MQ=255)
                                                                                                                                                                                                            ttttGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGATGACCATCATGATGAACCTCGGCTAACAAAgtgttcgcaagcagctgcaaagcgatccagtccggtcgtcacctcttcttcgctgacattgagcgcaggcgcaaaacgcaccacgttgccacccgcaatcagtaccatc                                                                      >  1:1981444‑M1/1‑180 (MQ=255)
                                                                                                                                                                                                            ttttGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGATGACCATCATGATGAACCTCGGCTAACAAAgtgttcgcaagcagctgcaaagcgatccagtccggtcgtcacctcttcttcgctgacattgagcgcaggcgca                                                                                                          >  1:622477‑M1/1‑180 (MQ=255)
                                                                                                                                                                                                            ttttGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGATGACCATCATGATGAACCTCGGCTAACAAAgtgttcgcaagcagctgcaaagcgatccagtccggtcgtcacctattcttcgctgacattgagcgcaggcgcaaaacgcaccacgttgccacccgcaatcagtaccat                                                                       >  1:2661227‑M1/1‑180 (MQ=255)
                                                                                                                                                                                                                      ttCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCaa                                                                                                                                                                                                                          <  2:2883176/131‑1 (MQ=255)
                                                                                                                                                                                                                      ttCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGATGa                                                                                                                                                                                                              >  1:2492603/1‑143 (MQ=255)
                                                                                                                                                                                                                      ttCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGATGACca                                                                                                                                                                                                           <  2:1906821/146‑1 (MQ=255)
                                                                                                                                                                                                                      ttCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGATGACCATCATGATGAACCTCGGCTAACAAAgtgttcgcaagcagctgcaaagcgatccagtccggtcgtcacctcttcttcgctgacattgagcgcaggcgcaaaacgcaccacgttgccacccgcaatcagtaccatcacgcctgctt                                                            >  1:2562013‑M1/1‑170 (MQ=255)
                                                                                                                                                                                                                      ttCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGATGACCATCATGATGAACCTCGGCTAACAAAgtgttcgcaagcagctgcaaagcgatc                                                                                                                                                        <  2:2034349‑M1/197‑28 (MQ=255)
                                                                                                                                                                                                                        cGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGATGACCATCATGATGAACCTCGGCTAACAAAgtggtcgcaagcagctgcaaagcgatccagtccggtcgtcacctcttcttcgctgacattgagcgcaggcgcaaaacgcaccacgtttccacccgcaatcagtaccatcacgcctgcttt                                                           >  1:1840899‑M1/1‑168 (MQ=255)
                                                                                                                                                                                                                                       tGATTGCCCTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGATGACCATCATGATGAACCTCGGCTAACAAAgtgttcgcaagcagctgcaaagcgatccagtccggtcgtcacctcttcttcgctgacattgagcgcaggcgcaaaacgcaccacgttgccacccgcaatcagtaccatcacgcctgctttcgccgcttcctgagag                                           >  1:2894480‑M1/1‑153 (MQ=255)
                                                                                                                                                                                                                                              ccTTTCGATACGCGCCGAAAGCGTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGATGACCATCATGATGAACCTCGGCTAACAAAgtgttcgcaagcagctgcaaagcgatccagtccggtcgtcacctcttcttcgctgacattgagcgcaggcgcaaaacgcaccacgttgccacccgcaatcagtaccatcacgcctgctttcgccgcttcctgagagatctgtt                                    >  1:3031582‑M1/1‑146 (MQ=255)
                                                                                                                                                                                                                                                         gcgccgaaagcgtggcTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGATGACCATCATGATGAACCTCGGCTAACAAAgtgttcgcaagcagctgcaaagcgatccagtccggttgtcacctcttcttcgctgacattgagcgcaggcgcaaaacgcaccacgttgccacccgcaatcagtaccatcacgcctgctttcgccgcttcctgagagatctgtttcgcttgcccg                         >  2:346631‑M1/8‑135 (MQ=255)
                                                                                                                                                                                                                                                             cgaaagcgTGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGATGACCATCATGATGAACCTCGGCTAACAAAgtgttcgcaagcagctgcaaagcgatccagtccggtcgtcacctcttcttcgctgacattgagcgcaggcgcaaaacgcaccacgttgccacccgcaatcagtaccatcacgcctgctttcgccgcttcctgagagatctgtttcgcttgcccggcgt                     <  1:1494905‑M1/286‑159 (MQ=255)
                                                                                                                                                                                                                                                             cgaaagcgTGGCTTCAGTGGCGGGGAGCGACGTCAGGCCGCCGCCCGTTGTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGATGACCATCATGATGAACCTCGGCTAACAAAgtgttcgcaagcagctgcaaagcgatccagtccggtcgtcacctcttcttcgctgacattgagcgcaggcgcaaaacgcaccacgttgccacccgcaatcagtaccatcacgcctgctttcgccgcttcctgagagatctgtttcgcttgcccggcgt                     <  2:2258528‑M1/286‑159 (MQ=255)
                                                                                                                                                                                                                                                                     tGGCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGATGACCATCATGATGAACCTCGGCTAACAAAgtgttcgcaagcagctgcaaagcgatccagtccggtcgtcacctcttcttcgctgacattgagcgcaggcgcaaaacgcaccacgttgccacccgcaatcagtaccatcacgcctgctttcgccgcttcctgagagatctgtttcgcttgcccggcgtaatcggc              <  2:524238‑M1/288‑166 (MQ=255)
                                                                                                                                                                                                                                                                       gCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGATGACCATCATGATGAACCTCGGCTAACAAAgtgttcgcaagcagctgcaaagcgatccagtccggtcgtcacctcttcttcgctgacattgagcgcaggcgcaaaacgcaccacgttgccacccgcaatcagtaccatcacgcctgctttcgccgcttcctgagagatctgtttcgcttgcccggcgtaatcggcat            >  2:453483‑M1/1‑121 (MQ=255)
                                                                                                                                                                                                                                                                       gCTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGATGACCATCATGATGAACCTCGGCTAACAAAgtgttcgcaagcagctgcaaagcgatccagtccggtcgtcacctcttcttcgctgacattgagcgcaggcgcaaaacgcaccacgttgccacccgcaatcagtaccatcacgcctgctttcgc                                                        <  1:463769‑M1/244‑124 (MQ=255)
                                                                                                                                                                                                                                                                        cTTCATTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGATGACCATCATGATGAACCTCGGCTAACAAAgtgttcgcaagcagctgcaaagcgatccagtccggtcgtcacctcttcttcgctgacattgagcgcaggcgcaaaacgcaccacgttgccacccgcaatcagtaccatcacgcctgctttcgccgcttcctgagagatctgtttcgcttgcccggcgtaatcggcatt           <  1:359795‑M1/288‑169 (MQ=255)
                                                                                                                                                                                                                                                                            aTTGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGATGACCATCATGATGAACCTCGGCTAACAAAgtgttcgcaagcagctgcaaagcgatccagtccggtcgtcacctcttcttcgctgacattgagcgcaggcgcaaaacgcaccacgttgccacccgcaatcagtaccatcacgcctgctttcgccgcttcctgagagatctgtttcgcttgcccggcgtaatcggcattcagt       >  1:1920942‑M1/1‑116 (MQ=255)
                                                                                                                                                                                                                                                                             ttGGCGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGATGACCATCATGATGAACCTCGGCTAACAAAgtgttcgcaagcagctgcaaagcgatccagtccggtcgtcacctcttcttcgctgacattgagcgcaggcgcaaaacgcaccacgttgccacccgcaatcagtaccatcacgcctgctttcgccgcttcctgagagatctgtttcgcttgcccggcgtaatcggcattcagtac     >  1:1012077‑M1/1‑115 (MQ=255)
                                                                                                                                                                                                                                                                                 cGGGAAGCGACGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCCGAGACATCTGATCGCTCAACGGGACGGATGACCATCATGATGAACCTCGGCTAACAAAgtgttcgcaagcagctgcaaagcgatccagtccggtcgtcacctcttcttcgctgacattgagcgcaggcgcaaaacgcaccacgttgccacccgcaatcagtaccatcacgcctgctttcgccgcttcctgagagatctgtttcgcttgcccggcgtaatcggcattcagtacaca  >  1:825608‑M1/1‑111 (MQ=255)
                                                                                                                                                                                                                                                                                        |||                                                                                                                                                                                                                                                                                      
GCTCGCTGCTGCCGGTGTGATCGTTACTGAGAAACAGCGTCGGCAATGCGTTATAGACATTCAGCTCTTTACTGGCGTGAACCAACGTGCCGACGCGATAGTTGTACCAGGGATCGTTCAGCCCAACCGCCACCTCAATGGCACAAATCCCCGCCACGGTGCCTGTCTCGCTATCTTCCAGCACGAACACATAGCCCTGCTCACTTTTGGGCAGTTCGCCTTGCCAGGTTTTGATTGCCCTTTCGATACGCGCGCTAAGCGTGGCTTCATTGGCGGGAAGGCTCGTCAGGCCGCCGCCCGTTTTGCTGGCAAGCTGCATCAGCGCGCTGACATCACTTCGCTCAACGGGACGGATGACCATCATGATGAACCTCGGCTAACAAATTATTTCAACTACTACCTCGGCTAACAAAGTGTTCGCAAGCAGCTGCAAAGCGATCCAGTCCGGTCGTCACCTCTTCTTCGCTGACATTGAGCGCAGGCGCAAAACGCACCACGTTGCCACCCGCAATCAGTACCATCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCT  >  CP042583/1512394‑1512954

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A