Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F210 I1 R1 4928 368.7 6392010 97.5% 6232209 231.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,533,219 3 bp→TCG intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,533,2190AT100.0% 939.8 / NA 389intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base T (216/173);  total (216/173)
*CP0425831,533,2200GC100.0% 930.7 / NA 389intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base C (216/173);  total (216/173)
*CP0425831,533,2210CG100.0% 937.8 / NA 389intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base G (216/173);  total (216/173)

Only 100 of 389 total aligned reads displayed.

TGCCTACACGGGCGGGACCATCGGGATGCAGCGTTCCGAGCAGGGTTATATACCGGTGAGTGGTCATCTACAACGCCAACTGGCGCTGATGCCGGAATTCCATCGCCCGGAGATGCCAGATTTCACCATTCATGAATATACGCCGCTGATGGATTCTAGTGATATGACGCCGGAAGACTGGCAGCATATTGCTGAAGATATTAAAGCGCAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGAGCTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGAGTCAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAATGCGTTGTACGTTGCGGCGAATTATCCGATCAACGAAGTAACGCTCTTTTTCAATAACCGATTGTATCGCGGCAACCGCACTACCAAAGCCCATGCCGATGGTTTTGATGCGTTTGCCTCTCCAAACCTTCCTCCGTTACTGGAAGCAGGTATCCATATTCGTCGTTTGAATACGCCAC  >  CP042583/1532939‑1533495
                                                                                                                                                                                                                                                                                         |||                                                                                                                                                                                                                                                                                  
tGCCTACACGGGCGGGACCATCGGGATGCAGCGTTCCGAGCAGGGTTATATACCGGTGTCAGGTCATCTACAACGCCAACTGGCGCTGATGCCGGAATTCCATCGCCCGGAGATGCCAGATTTCACCATTCATGAATATACGCCGCTGATGGATTCTTCAGATATGACGCCGGAAGACTGGCAGCATATTGCTGAAGATATTAAAGCGCAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATg                                                                                                                                                                                                                                                                              <  1:2633659/289‑1 (MQ=255)
        cgggcgggACCATCGGGATGCAGCGTTCCGAGCAGGGTTATATACCGGTGTCAGGTCATCTACAACGCCAACTGGCGCTGATGCCGGAATTCCATCGCCCGGAGATGCCAGATTTCACCATTCATGAATATACGCCGCTGATGGATTCTTCGGATATGACGCCGGAAGACTGGCAGCATATTGCTGAAGATATTAAAGCGCAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGaa                                                                                                                                                                                                                                                                      <  1:165493/289‑1 (MQ=255)
        cgggcgggACCATCGGGATGCAGCGTTCCGAGCAGGGTTATATACCGGTGTCAGGTCATCTACAACGCCAACTGGCGCTGATGCCGGAATTCCATCGCCCGGAGATGCCAGATTTCACCATTCATGAATATACGCCGCTGATGGATTCTTCAGATATGACGCCGGAAGACTGGCAGCATATTGCTGAAGATATTAAAGCGCAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGaa                                                                                                                                                                                                                                                                      <  2:1670843/289‑1 (MQ=255)
          ggcgggACCATCGGGATGCAGCGTTCCGAGCAGGGTTATATACCGGTGTCAGGTCATCTACAACGCCAACTGGCGCTGATGCCGGAATTCCATCGCCCGGAGATGCCAGATTTCACCATTCATGAATATACGCCGCTGATGGATTCTTCAGATATGACGCCGGAAGACTGGCAGCATATTGCTGAAGATATTAAAGCGCAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGaa                                                                                                                                                                                                                                                                      >  1:2439632/1‑287 (MQ=255)
            cgggACCATCGGGATGCAGCGTTCCGAGCAGGGTTATATACCGGTGTCAGGTCATCTACAACGCCAACTGGCGCTGATGCCGGAATTCCATCGCCCGGAGATGCCAGATTTCACCATTCATGAATATACGCCGCTGATGGATTCTTCAGATATGACGCCGGAAGACTGGCAGCATATTGCTGAAGATATTAAAGCGCAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAAtctc                                                                                                                                                                                                                                                                  >  1:948284/1‑289 (MQ=255)
            cgggACCATCGGGATGCAGCGTTCCGAGCAGGGTTATATACCGGTGTCAGGTCATCTACAACGCCAACTGGCGCTGATGCCGGAATTCCATCGCCCGGAGATGCCAGATTTCACCATTCATGAATATACGCCGCTGATGGATTCTTCAGATATGACGCCGGAAGACTGGCAGCATATTGCTGAAGATATTAAAGCGCAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAAtctc                                                                                                                                                                                                                                                                  >  1:3155810/1‑289 (MQ=255)
            cgggACCATCGGGATGCAGCGTTCCGAGCAGGGTTATATACCGGTGTCAGGTCATCTACAACGCCAACTGGCGCTGATGCCGGAATTCCATCGCCCGGAGATGCCAGATTTCACCATTCATGAATATACGCCGCTGATGGATTCTTCAGATATGACGCCGGAAGACTGGCAGCATATTGCTGAAGATATTAAAGCGCAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAAtct                                                                                                                                                                                                                                                                   >  2:376990/1‑288 (MQ=255)
            cgggACCATCGGGATGCAGCGTTCCGAGCAGGGTTATATACCGGTGTCAGGTCATCTACAACGCCAACTGGCGCTGATGCCGGAATTCCATCGCCCGGAGATGCCAGATTTCACCATTCATGAATATACGCCGCTGATGGATTCTTCAGATATGACGCCGGAAGACTGGCAGCATATTGCTGAAGATATTAAAGCGCAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAAtccc                                                                                                                                                                                                                                                                  >  2:3082232/1‑287 (MQ=255)
                     cGGGATGCAGCGTTCCGAGCAGGGTTATATACCGGTGTCAGGTCATCTACAACGCCAACTGGCGCTGATGCCGGAATTCCATCGCCCGGAGATGCCAGATTTCACCATTCATGAATATACGCCGCTGATGGATTCTTCAGATATGACGCCGGAAGACTGGCAGCATATTGCTGAAGATATTAAAGCGCAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCg                                                                                                                                                                                                                                                         >  1:2532409/1‑289 (MQ=255)
                         aTGCAGCGTTCCGAGCAGGGTTATATACCGGTGTCAGGTCATCTACAACGCCAACTGGCGCTGATGCCGGAATTCCATCGCCCGGAGATGCCAGATTTCACCATTCATGAATATACGCCGCTGATGGATTCTTCAGATATGACGCCGGAAGACTGGCAGCATATTGCTGAAGATATTAAAGCGCAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCa                                                                                                                                                                                                                                                     >  1:1873604/1‑289 (MQ=255)
                          tGCAGCGTTCCGAGCAGGGTTATATACCGGTGTCAGGTCATCTACAACGCCAACTGGCGCTGATGCCGGAATTCCATCGCCCGGAGATGCCAGATTTCACCATTCATGAATATACGCCGCTGATGGATTCTTCAGATATGACGCCGGAAGACTGGCAGCATATTGCTGAAGATATTAAAGCGCAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATTCTCGTGAATTCCGGTAAACAGGTcct                                                                                                                                                                                                                                                    >  2:2591643/1‑287 (MQ=255)
                           gCAGCGTTCCGAGCAGGGTTATATACCGGTGTCAGGTCATCTACAACGCCAACTGGCGCTGATGCCGGAATTCCATCGCCCGGAGATGCCAGATTTCACCATTCATGAATATACGCCGCTGATGGATTCTTCAGATATGACGCCGGAAGACTGGCAGCATATTGCTGAAGATATTAAAGCGCAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCAtt                                                                                                                                                                                                                                                   >  1:1448560/1‑289 (MQ=255)
                                                     cggtgtcaggTCATCTACAACGCCAACTGGCGCTGATGCCGGAATTCCATCGCCCGGAGATGCCAGATTTCACCATTCATGAATATACGCCGCTGATGGATTCTTCAGATATGACGCCGGAAGACTGGCAGCATATTGCTGAAGATATTAAAGCGCAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCg                                                                                                                                                                                                                                                         <  2:619960/249‑1 (MQ=255)
                                                     cggtgtcaggTCATCTACAACGCCAACTGGCGCTGATGCCGGAATTCCATCGCCCGGAGATGCCAGATTTCACCATTCATGAATATACGCCGCTGATGGATTCTTCAGATATGACGCCGGAAGACTGGCAGCATATTGCTGAAGATATTAAAGCGCAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCa                                                                                                                                                                                                                                                     <  1:2315426/253‑1 (MQ=255)
                                                     cggtgtcaggTCATCTACAACGCCAACTGGCGCTGATGCCGGAATTCCATCGCCCGGAGATGCCAGATTTCACCATTCATGAATATACGCCGCTGATGGATTCTTCAGATATGACGCCGGAAGACTGGCAGCATATTGCTGAAGATATTAAAGCGCAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCa                                                                                                                                                                                                                                                     >  2:2315426/9‑261 (MQ=255)
                                                       gtgtcaggTCATCTACAACGCCAACTGGCGCTGATGCCGGAATTCCATCGCCCGGAGATGCCAGATTTCACCATTCATGAATATACGCCGCTGATGGATTCTTCAGATATGACGCCGGAAGACTGGCAGCATATTGCTGAAGATATTAAAGCGCAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCgctggctg                                                                                                                                                                                                                       >  2:217449/7‑289 (MQ=255)
                                                       gtgtcaggTCATCTACAACGCCAACTGGCGCTGATGCCGGAATTCCATCGCCCGGAGATGCCAGATTTCACCATTCATGAATATACGCCGCTGATGGATTCTTCAGATATGACGCCGGAAGACTGGCAGCATATTGCTGAAGATATTAAAGCGCAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCgctggctg                                                                                                                                                                                                                       >  1:1335787/7‑289 (MQ=255)
                                                           caggTCATCTACAACGCCAACTGGCGCTGATGCCGGAATTCCATCGCCCGGAGATGCCAGATTTCACCATTCATGAATATACGCCGCTGATGGATTCTTCAGATATGACGCCGGAAGACTGGCAGCATATTGCTGAAGATATTAAAGCGCAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGt                                                                                                                                                                                                                    <  2:2051162/286‑1 (MQ=255)
                                                                  tCTACAACGCCAACTGGCGCTGATGCCGGAATTCCATCGCCCGGAGATGCCAGATTTCACCATTCATGAATATACGCCGCTGATGGATTCTTCAGATATGACGCCGGAAGACTGGCAGCATATTGCTGAAGATATTAAAGCGCAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGc                                                                                                                                                                                                               >  1:324504/1‑286 (MQ=255)
                                                                  tCTACAACGCCAACTGGCGCTGATGCCGGAATTCCATCGCCCGGAGATGCCAGATTTCACCATTCATGAATATACGCCGCTGATGGATTCTTCAGATATGACGCCGGAAGACTGGCAGCATATTGCTGAAGATATTAAAGCGCAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGc                                                                                                                                                                                                               >  2:147104/1‑286 (MQ=255)
                                                                   cTACAACGCCAACTGGCGCTGATGCCGGAATTCCATCGCCCGGAGATGCCAGATTTCACCATTCATGAATATACGCCGCTGATGGATTCTTCAGATATGACGCCGGAAGACTGGCAGCATATTGCTGAAGATATTAAAGCGCAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTg                                                                                                                                                                                                           >  1:2841706/1‑289 (MQ=255)
                                                                   cTACAACGCCAACTGGCGCTGATGCCGGAATTCCATCGCCCGGAGATGCCAGATTTCACCATTCATGAATATACGCCGCTGATGGATTCTTCAGATATGACGCCGGAAGACTGGCAGCATATTGCTGAAGATATTAAAGCGCAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTATg                                                                                                                                                                                                           >  1:2992708/1‑289 (MQ=255)
                                                                            cAACTGGCGCTGATGCCGGAATTCCATCGCCCGGAGATGCCAGATTTCACCATTCATGAATATACGCCGCTGATGGATTCTTCAGATATGACGCCGGAAGACTGGCAGCATATTGCTGAAGATATTAAAGCGCAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACaaa                                                                                                                                                                                                  <  2:2875845/289‑1 (MQ=255)
                                                                                        aTGCCGGAATTCCATCGCCCGGAGATGCCAGATTTCACCATTCATGAATATACGCCGCTGATGGATTCTTCAGATATGACGCCGGAAGACTGGCAGCATATTGCTGAAGATATTAAAGCGCAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGCATCCCGGTAAACCGGTCATTGTGACAGGGTCAACAATCCCGCTGGCTGAGTTACGACCTGCCGGGCAAGTTAACctgcgtg                                                                                                                                                                                      >  2:1294724/1‑286 (MQ=255)
                                                                                                                   ccAGATTTCACCATTCATGAATATACGCCGCTGATGGATTCTTCAGATATGACGCCGGAAGACTGGCAGCATATTGCTGAAGATATTAAAGCGCAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAATGCGTTGTACGGTGCGGCGAATTAt                                                                                                                                                            >  2:514164/1‑288 (MQ=255)
                                                                                                                     aGATTTCACCAGTCATGAAGAGACGCCGCTGATGGATGTTGCAGATATGACGCTGACAGCCTGGCAGAATATTGCTGAAGATATTACAGCGCAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGAGGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCGCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAATGCGTTGTACGTTGCGGCGAATTATCCg                                                                                                                                                         <  2:2245872/289‑1 (MQ=255)
                                                                                                                          tCACCATTCATGAATATACGCCGCTGATGGATTCTTCAGATATGACGCCGGAAGACTGGCAGCATATTGCTGAAGATATTAAAGCGCAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAATGCGTTGTACGTTGCGGCGAATTATCCGATCaa                                                                                                                                                    <  2:2276492/289‑1 (MQ=255)
                                                                                                                            aCCATTCATGAATATACGCCGCTGATGGATTCTTCAGATATGACGCCGGAAGACTGGCAGCATATTGCTGAAGATATTAAAGCGCAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAATGCGTTGTACGTTGCGGCGAATTATCCGATCAACg                                                                                                                                                  >  2:482876/1‑289 (MQ=255)
                                                                                                                                ttCATGAATATACGCCGCTGATGGATTCTTCAGATATGACGCCGGAAGACTGGCAGCATATTGCTGAAGATATTAAAGCGCAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAATGCGTTGTACGTTGCGGCGAATTATCCGATCAACGAAGt                                                                                                                                              >  1:2060343/1‑289 (MQ=255)
                                                                                                                                  cATGAATATACGCCGCTGATGGATTCTTCAGATATGACGCCGGAAGACTGGCAGCATATTGCTGAAGATATTAAAGCGCAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAAt                                                                                                                                                                                             >  2:10116/1‑240 (MQ=255)
                                                                                                                                  cATGAATATACGCCGCTGATGGATTCTTCAGATATGACGCCGGAAGACTGGCAGCATATTGCTGAAGATATTAAAGCGCAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAAt                                                                                                                                                                                             <  1:10116/240‑1 (MQ=255)
                                                                                                                                    tGAATATACGCCGCTGATGGATTCTTCAGATATGACGCCGGAAGACTGGCAGCATATTGCTGAAGATATTAAAGCGCAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAATGCGTTGTACGTTGCGGCGAATTATCCGATCAACGAAGTAACg                                                                                                                                          <  1:147104/289‑1 (MQ=255)
                                                                                                                                        tataCGCCGCTGATGGATTCTTCAGATATGACGCCGGAAGACTGGCAGCATATTGCTGAAGATATTAAAGCGCAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAgg                                                                                                                                                                                                                                           <  1:2160495/188‑1 (MQ=255)
                                                                                                                                          taCGCCGCTGATGGATTCTTCAGATATGACGCCGGAAGACTGGCAGCATATTGCTGAAGATATTAAAGCGCAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGCCGGACAAATTAATCTGCTGAATGCGTTGTACGTTGCGGCGAATTATCCGATACACCAAGTAACGCTCttt                                                                                                                                    >  2:439524/1‑289 (MQ=255)
                                                                                                                                          taCGCCGCTGATGGATTCTTCAGATATGACGCCGGAAGACTGGCAGCATATTGCTGAAGATATTAAAGCGCAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAATGCGTTGTACg                                                                                                                                                                          >  1:1769955/1‑251 (MQ=255)
                                                                                                                                          taCGCCGCTGATGGATTCTTCAGATATGACGCCGGAAGACTGGCAGCATATTGCTGAAGATATTAAAGCGCAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAATGCGTTGTACGTTTCGGCGAATTCTCCGAACAACGAAGTAACGCTCttt                                                                                                                                    >  2:2986339/1‑289 (MQ=255)
                                                                                                                                           aCGCCGCTGATGGATTCTTCAGATATGACGCCGGAAGACTGGCAGCATATTGCTGAAGATATTAAAGCGCAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAAt                                                                                                                                                                                    <  2:1739804/240‑1 (MQ=255)
                                                                                                                                           aCGCCGCTGATGGATTCTTCAGATATGACGCCGGAAGACTGGCAGCATATTGCTGAAGATATTAAAGCGCAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAATGCGTTGTACGTTGCGGCGAATTATCCGATCAACGAAGTAACGCTCtttt                                                                                                                                   >  1:229254/1‑289 (MQ=255)
                                                                                                                                               cgcTGATGGATTCTTCAGATATGACGCCGGAAGACTGGCAGCATATTGCTGAAGATATTAAAGCGCAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAAt                                                                                                                                                                                    >  1:1299961/1‑236 (MQ=255)
                                                                                                                                               cgcTGATGGATTCTTCAGATATGACGCCGGAAGACTGGCAGCATATTGCTGAAGATATTAAAGCGCAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAATGCGTTGTACGTTGCGGCGAATTATCCGATCAACGAAGTAACGCTCTTTTTCaa                                                                                                                               <  1:1223212/289‑1 (MQ=255)
                                                                                                                                                gcTGATGGATTCTTCAGATATGACGCCGGAAGACTGGCAGCATATTGCTGAAGATATTAAAGCGCAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAATGCg                                                                                                                                                                                 >  1:2739394/1‑238 (MQ=255)
                                                                                                                                                 cTGATGGATTCTTCAGATATGACGCCGGAAGACTGGCAGCATATTGCTGAAGATATTAAAGCGCAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGt                                                                                                                                                                                                                                                       <  2:2431486/167‑1 (MQ=255)
                                                                                                                                                  tGATGGATTCTTCAGATATGACGCCGGAAGACTGGCAGCATATTGCTGAAGATATTAAAGCGCAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAATGCGTTGTACGTTGCGGCGAATTATCCGATCAACGAAGTAACGCTCTTTTTCAATa                                                                                                                             >  1:460638/1‑288 (MQ=255)
                                                                                                                                                      ggATTCTTCAGATATGACGCCGGAAGACTGGCAGCATATTGCTGAAGATATTAAAGCGCAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAATGCGTTGTACGTTGCGGCGAATTATCCGATCAACGAAGTAACGCTCTTTTTCAATAACCGa                                                                                                                        <  1:309675/289‑1 (MQ=255)
                                                                                                                                                         ttcttcagATATGACGCCGGAAGACTGGCAGCATATTGCTGAAGATATTAAAGCGCAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAATGCGTTGTACGTTGCGGCGAATTATCCGATCAACGAAGTAACGCTCTTTTTCAATAACCGATTg                                                                                                                     >  2:775844/8‑289 (MQ=255)
                                                                                                                                                                     gACGCCGGAAGACTGGCAGCATATTGCTGAAGATATTAAAGCGCAC‑TATGACGACTATGATGGTTTGGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAATGCGTTGTACGTTGCGGCGAATTATCCGATCAACGAAGTAACGCTCTTTTTCAATAACCGATTGTATCGCGGCAAc                                                                                                         <  1:1721836/289‑1 (MQ=255)
                                                                                                                                                                      aCGCCGGAAGACTGGCAGCATATTGCTGAAGATATTAAAGCGCAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAAt                                                                                                                                                                                    >  2:1051355/1‑213 (MQ=255)
                                                                                                                                                                          cGGAAGACTGGAAGGTTATTGCTGAAGATATGAAAGC‑CACATATGACGACTATTGTGTTTTTGTCATTCTGCACGGCCCCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAATGCGTTGTACGTTGCGGCGAATTATCCGATCAACGAAGTAACGCTCTTTTTCAATAACCGATTGTATCGCGGCAACCGCa                                                                                                     <  2:2529458/288‑1 (MQ=255)
                                                                                                                                                                                 cTGGCAGCATATTGCTGAAGATATTAAAGCGCAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAATGCGTTGTACGTTGCGGCGAATTATCCGATCAACGAAGTAACGCTCTTTTTCAATAACCGATTGTATCGCGGCAACCGCACTACCa                                                                                               <  1:514164/287‑1 (MQ=255)
                                                                                                                                                                                             tGCTGAAGATATTAAAGCGCAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAAt                                                                                                                                                                                    <  2:696216/190‑1 (MQ=255)
                                                                                                                                                                                                  aaGATATTAAAGCGCAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAATGCGTTGTACGTTGCGGCGAATTATCCGAt                                                                                                                                                       >  1:1037750/1‑214 (MQ=255)
                                                                                                                                                                                                  aaGATATTAAAGCGCAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAATGCGTTGTACGTTGCGGCGAATTATCCGATCAACGAAGTAACGCTCTTTTTCAATAACCGATTGTATCGCGGCAACCGCACTACCAAAGCCCATGCCGATGGttt                                                                            >  1:2267661/1‑289 (MQ=255)
                                                                                                                                                                                                    gATATTAAAGCGCAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAATGCGTTGTACGTTGCGGCGAATTATCCGATCAACGAAGTAACGCTCTTTTTCAATAACCGATTGTATCGCGGCAACCGCACTACCAAAGCCCATGCCGATGGTTTTg                                                                          >  2:2395181/1‑289 (MQ=255)
                                                                                                                                                                                                       atTAAAGCGCAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCgctggct                                                                                                                                                                                                                        <  1:1939356/144‑1 (MQ=255)
                                                                                                                                                                                                       atTAAAGCGCAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAATGCGTTGTACGTTGCGGCGAATTATCCGATCAACGAAGTAACGCTCTTTTTCAATAACCGATTGTATCGCTGCAACCGCACTACCAAACCCCATGCCCATGGGTTTGAt                                                                        >  2:3192840/1‑288 (MQ=255)
                                                                                                                                                                                                         tAAAGCGCAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAATGCGTTGTACGTTGCGGCGAATTATCCGATCAACGAAGTAACGCTCTTTTTCAATAACCGATTGTATCGCGGCAACCGCACTACCAAAGCCCATGCCGATGGTTTTGATGCg                                                                     >  2:963531/1‑289 (MQ=255)
                                                                                                                                                                                                              cgcAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAATGCGTTGTACGTTGCGGCGAATTATCCGATCAACGAAGTAACGCTCTTTTTCAATAACCGATTGTATCGCGGCAACCGCa                                                                                                     <  2:14335/252‑1 (MQ=255)
                                                                                                                                                                                                                cAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCgctgg                                                                                                                                                                                                                          >  1:2371038/1‑133 (MQ=255)
                                                                                                                                                                                                                cAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCgctgg                                                                                                                                                                                                                          <  2:2371038/133‑1 (MQ=255)
                                                                                                                                                                                                                cAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACa                                                                                                                                                                                                    <  1:1977326/155‑1 (MQ=255)
                                                                                                                                                                                                                cAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACa                                                                                                                                                                                                    >  2:1977326/1‑155 (MQ=255)
                                                                                                                                                                                                                cAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAATGCGTTGTACGTTGCGGCGAATTATCCGATCAACGAAGTAACGCTCTTTTTCAATAACCGATTGTATCGCGGCAACCg                                                                                                       >  1:1571710/1‑248 (MQ=255)
                                                                                                                                                                                                                cAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAATGCGTTGTACGTTGCGGCGAATTATCCGATCAACGAAGTAACGCTCTTTTTCAATAACCGATTGTATCGCGGCAACCg                                                                                                       <  2:1571710/248‑1 (MQ=255)
                                                                                                                                                                                                                cAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATA‑CGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAATGCGTTGTACGTTGCGGCGAATTATCCGATCAACGAAGTAACGCTCTTTTTCAATAACCGATTGTATCGCGGCAACCGCACTACCAAAGCCCATGCCGATGGTTTTGATGCGTTTGCct                                                              >  2:1174755/1‑288 (MQ=255)
                                                                                                                                                                                                                  c‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAATGCGTTGTACGTTGCGGCGAATTATCCGATCAACGAAGTAACGCTCTTTTTCAATAACCGATTGTATCGCGGCAACCGCACTACCAAAGCCCATGCCGATGGTTTTGATGCGTTTGCctc                                                             >  1:2871179/1‑288 (MQ=255)
                                                                                                                                                                                                                      tGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTAAACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAATGCGTTGTACGTTGCGGCGAATTATCCGATCAACGAAGTAACGCTCTTTTTCAATAACCGATTGTATCGCGGCAACCGCACTACCAAAGCCCATGCCGATGGTTTTGATGCGTTTGCCTCTCCa                                                         >  2:2298924/1‑289 (MQ=255)
                                                                                                                                                                                                                       gacggtgttgatgGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAATGCGTTGTACGTTGCGGCGAATTATCCGATCAACGAAGTAACGCTCTTTTTCAATAACCGATTGTATCGCGGCAACCGCACTACCAAAGCCCATGCCGATGGTTTTGATGCGTTTGCCTCTCCaa                                                        <  2:1904448/281‑1 (MQ=255)
                                                                                                                                                                                                                             tattatGTTTTTGCACTTCTGCACGGCACCGACACGATGGCTAATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAATGCGTTGTACGTTGCGGCGAATTATCCGATCAACGAAGTAACGCTCTTTTTCAATAACCGATTGTATCGCGGCAACCGCACTACCAAAGCCCATGCCGATGGTTTTGATGCGTTTGCCTCTCCAAACCTtc                                                  <  2:1823728/289‑1 (MQ=255)
                                                                                                                                                                                                                              atgatgGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAATGCGTTGTACGTTGCGGCGAATTATCCGATCAACGAAGTAACGctct                                                                                                                                      <  1:730076/204‑1 (MQ=255)
                                                                                                                                                                                                                              atgatgGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAATGCGTTGTACGTTGCGGCGAATTATCCGATCAACGAAGTAACGCTCTTTTTCAATAACCGATTGTATCGCGGCAACCGCACTACCAAAGCCCATGCCGATGGTTTTGATGCGTTTGCCTCTCCAAACCTtc                                                  >  1:108293/1‑288 (MQ=255)
                                                                                                                                                                                                                              atgatgGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAATGCGTTGTACGTTGCGGCGAATTATCCGATCAACGAAGTAACGCTCTTTTTCAATAACCGATTGTATCGCGGCAACCGCACTACCAAAGCCCATGCCGATGGTTTTGATGCGTTTGCCTCTCCAAACCTtc                                                  >  1:2203035/1‑288 (MQ=255)
                                                                                                                                                                                                                              atgatgGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAATGCGTTGTACGTTGCGGCGAATTATCCGATCAACGAAGTAACGCGCTTTTTCAATAACCGATTGTATCGCGGCAACCGCACTACCAAAGCCCATGCCCATGGGTTTGATGCGTTTGCCCCTCCAAACCtcc                                                  >  2:869680/1‑286 (MQ=255)
                                                                                                                                                                                                                              atgatgGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCCGCTCAATGCGTTGTACGTTGCGGCGAATGATCCGATCAACGAAGTAACGCTCTTTTTCAATAACCGATAGTATAGCGGCAACGGAACAACCAAAGCCCATGCCGCTGGTCTGGATGCGTTTTCCTCTACAAAACtcc                                                  >  2:1220585/1‑286 (MQ=255)
                                                                                                                                                                                                                                gatgGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAATGCGTTGTACGTTGCGGCGAATTATCCGATCAACGAAGTAACGCTCTTTTTCAATAACCGATTGTATCGCGGCAACCGCACTACCAAAGCCCATGCCGATGGTTTTGATGCGTTTGCCTCTCCAAACCTtcct                                                >  2:2019791/1‑288 (MQ=255)
                                                                                                                                                                                                                                  tgGTTTGGTCATTCCTCCCGGCACCGGCACGATGGCGTATACCGCCTCTACGCCGTCGTTCATGCTCGAGAAGCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCGGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAATGCGTTGTACGTTGCGGCGAATTATCCGATCAACGAAGTAACGCTCTTTTTCAATAACCGATTGTATCGCGGCAACCGCACTACCAAAGCCCATGCCGATGGTTTTGATGCGTTTGCCTCTCCAAACCTTCCTCCg                                             <  2:131007/289‑1 (MQ=255)
                                                                                                                                                                                                                                    gTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAATGCGTTGTACGTTGCGGCGAATTATCCGATCAACGAAGTAACGCTCTTTTTCAATAACCGATTGTATCGCGGCAACCGCACTACCAAAGCCCATGCCGa                                                                                  <  1:880771/250‑1 (MQ=255)
                                                                                                                                                                                                                                       ttGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAATGCGTTGTACGTTGCGGCGAATTATCCGATCAACGAAGTAACGCTCTTTTTCAATAACCGATTGTATCGCGGCAACCGCACTACCAAAg                                                                                            >  2:1800774/1‑237 (MQ=255)
                                                                                                                                                                                                                                       ttGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAATGCGTTGTACGTTGCGGCGAATTATCCGATCAACGAAGTAACGCTCTTTTTCAATAACCGATTGTATCGCGGCAACCGCACTACCAAAGCCCATGCCGATGGTTTTGATGCGTTTGCCTCTCCAAACCTTCCTCCGTTACt                                        <  1:66751/289‑1 (MQ=255)
                                                                                                                                                                                                                                         gTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCgctggct                                                                                                                                                                                                                        >  2:2474718/1‑111 (MQ=255)
                                                                                                                                                                                                                                         gTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCgctggct                                                                                                                                                                                                                        <  1:2474718/111‑1 (MQ=255)
                                                                                                                                                                                                                                           cATTCTGCACGGCACCGACACGATGGCGTATA‑CGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAATGCGTTGTACGTTGCGGCGAATTATCCGATCAACGAAGTAACGCTCTTTTTCAATAACCGATTGTATCGCGGCAACCGCACTACCAAAGCCCATGCCGATGGTTTTGATGCGTTTGCCTCTCCAAACCTTCCTCCGTTACTGGAAg                                   <  1:1174755/289‑1 (MQ=255)
                                                                                                                                                                                                                                            aTTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAATGCGTTGTACGTTGCGGCGAATTATCCGATCAACGAAGTAACGCTCTTTTTCAATAACCGATTGTATCGCGGCAACCGCACTACCAAAGCCCATGCCGATGGTTTTGATGCGTTTGCCTCTCCAAACCTTCCTCCGTTACTGGAAg                                   <  1:698309/289‑1 (MQ=255)
                                                                                                                                                                                                                                            aTTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAATGCGTTGTACGTTGCGGCGAATTATCCGATCAACGAAGTAACGCTCTTTTTCAATAACCGATTGTATCGCGGCAACCGCACTACCAAAGCCCATGCCGATGGTTTTGATGCGTTTGCCTCTCCAAACCTTCCTCCGTTACTGGAAg                                   <  1:2395181/289‑1 (MQ=255)
                                                                                                                                                                                                                                               cTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAATGCGTTGTACGTTGCGGCGAATTATCCGATCAACGAAGTAACGCTCTTTTTCAATAACCGATTGTATCGCGGCAACCGCACTACCAAAGCCCATGCCGATGGTTTTGATGCGTTTGCCTCTCCAAACCTTCCTCCGTTACTGGa                                     >  1:2670731/1‑284 (MQ=255)
                                                                                                                                                                                                                                               cTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAATGCGTTGTACGTTGCGGCGAATTATCCGATCAACGAAGTAACGCTCTTTTTCAATAACCGATTGTATCGCGGCAACCGCACTACCAAAGCCCATGCCGATGGTTTTGATGCGTTTGCCTCTCCAAACCTTCCTCCGTTACTGGa                                     <  2:2670731/284‑1 (MQ=255)
                                                                                                                                                                                                                                                   aCGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAATGCGTTGTACGTTGCGGCGAATTATCCGATCAACGAAGTAACGCTCTTTTTCAATAACCGATTGTATCGCGGCAACCGCACTACCAAAGCCCATGCCGATGGTTTTGATGCGTTTGCCTCTCCAAACCTTCCTCCGTTACTGGAAGCAGGTAt                            <  2:210347/289‑1 (MQ=255)
                                                                                                                                                                                                                                                       cACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAATGCGTTGTACGTTGCGGCGAATTATCCGATCAACGAAGTAACGCTCTTTTTCAATAACCGATTGTATCGCGGCAACCGCCCTACCAAAGCCCATGCCGATGGTTTTGATTCGTTTGCCCCCCCAAACCTTCCCCCCGTACTGGATGCAGGTATCCac                        >  2:2815724/1‑288 (MQ=255)
                                                                                                                                                                                                                                                       cACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAATGCGTTGTACGTTGCGGCGAATTATCCGATCAACGAAGTAACGCTCTTTTTCAATAACCGATTGTATCGCGGCAACCGCACTACCAAAGCCCATGCCGATGGTTTTGATGCGTTTGCCTCTCCAAACCTTCCTCCGTTACTGGAAGCAGGTATCCat                        >  1:619846/1‑289 (MQ=255)
                                                                                                                                                                                                                                                       cACCGACACGATGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAATGCGTTGTACGTTGCGGCGAATTATCCGATCAACGAAGTAACGCTCTTTTTCAATAACCGATTGTATCGCGGCAACCGCACTACCAAAGCCCATGCCGATGGTTTTGATGCGTTTGCCTCTCCAAACCTTCCTCCGTTACTGGAAGCAGGTATCCat                        >  2:2760773/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                 aTGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAATGCGTTGTACGTTGCGGCGAATTATCCGATCAACGAAGTAACGCTCTTTTTCAATAACCGATTGTATCGCGGCAACCGCACTACCAAAGCCCATGCCGATGGTTTTGATGCGTTTGCCTCTCCAAACCTTCCTCCGTTACTGGAAGCAGGTATCCATATTcgtcgt               <  1:775844/288‑1 (MQ=255)
                                                                                                                                                                                                                                                                 aTGGCGTATACCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAATGCGTTGTACGTTGCGGCGAATTATCCGATCAACGAAGTAACGCTCTTTTTCAATAACCGATTGTATCGCGGCAACCGCACTACCAAAGCCCATGCCGATGGTTTTGATGCGTTTGCCTCTCCAAACCTTCCTCCGTTACTGGAAGCAGGTATCCATATTCGTCGtt              >  1:2047617/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                   ggCGTATACCGCCTCTACGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGCTACGCTCTGACGGACAAATTAATCTGCTGAATGCGTTGTACGTTGCGGCGAATTATCCGATCAACGAAGTAACGCTCTTTTTCAATAACCGATTGTATCGCGGCAACCGCCCTACCAAAGCCCATGCCGATGGTTTTGATGCGTTTGCCTCTCCAAACCTTCCTCCGTTACTGGAAGCAGGTATCCATATTCGTCGTTTg            >  1:2018503/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                       tataCCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAATGCGTTGTACGTTGCGGCGAATTATCCGATCAACGAAGTAACGCTCTTTTTCAATAACCGATTGTATCGCGGCAACCGCACTACCAAAGCCCATGCCGATGGTTTTGATGCGTTTGCCTCTCCCAACCTTCCTCCGTTACTGGCAGCAGGTATCCATATTCGTCGTTTGAAt         >  1:2934224/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                          aCCGCCTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAATGCGGTGTACGTTGCGGCGAATTATCCGATCAACGAAGTAACGCTCTTTTTCAATAACCGATTGTATCGCGGCAACCGCACTACCAAAGCCCATGCCGATGGTTTTGATGCGTTTGCCTCTCCAAACCTTCCTCCGTTACTGGAAGCAGGTATCCATATTCGTCGTTTGAATACg      >  2:1128272/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                              ccTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAAt                                                                                                                                                                                    <  1:386642/110‑1 (MQ=255)
                                                                                                                                                                                                                                                                              ccTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAATGCGTTGTACGTTGCGGCGAATTATCCGATCAACGAAGTAACGCTCTTTTTCAATAACCGATTGTATCGCGGCAACCGc                                                                                                      <  2:3023214/188‑1 (MQ=255)
                                                                                                                                                                                                                                                                              ccTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAATGCGTTGTACGTTGCGGCGAATTATCCGATCAACGAAGTAACGCTCTTTTTCAATAACCGATTGTATCGCGGCAACCGc                                                                                                      >  1:3023214/1‑188 (MQ=255)
                                                                                                                                                                                                                                                                              ccTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAATGCGTTGTACGTTGCGGCGAATTATCCGATCAACGAAGTAACGCTCTTTTTCAATAACCGATTGTATCGCGGCAACCGCACTAcc                                                                                                <  1:1814171/194‑1 (MQ=255)
                                                                                                                                                                                                                                                                              ccTCTGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAATGCGTTGTACGTTGCGGCGAATTATCCGATCAACGAAGTAACGCTCTTTTTCAATAACCGATTGTATCGCGGCAACCGCACTACCAAAGCCCATGCCGATGGTTTTGATGCGTTTGCCTCTCCAAACCTTCCTCCGTTACTGGAAGCAGGTATCCATATTCGTCGTTTGAATACGCCAc  >  1:3169267/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                                  tGCGCTGTCGTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGTCACAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAATGCGTTGTACGTTGCGGCGAATTATCCGATCAACGAAGTAACGCTCTTTTTCAATa                                                                                                                             <  2:729406/161‑1 (MQ=255)
                                                                                                                                                                                                                                                                                         |||                                                                                                                                                                                                                                                                                  
TGCCTACACGGGCGGGACCATCGGGATGCAGCGTTCCGAGCAGGGTTATATACCGGTGAGTGGTCATCTACAACGCCAACTGGCGCTGATGCCGGAATTCCATCGCCCGGAGATGCCAGATTTCACCATTCATGAATATACGCCGCTGATGGATTCTAGTGATATGACGCCGGAAGACTGGCAGCATATTGCTGAAGATATTAAAGCGCAC‑TATGACGACTATGATGGTTTTGTCATTCTGCACGGCACCGACACGATGGCGTATACCGCCTCTGCGCTGAGCTTCATGCTCGAGAATCTCGGTAAACCGGTCATTGTGACAGGGAGTCAAATCCCGCTGGCTGAGTTACGCTCTGACGGACAAATTAATCTGCTGAATGCGTTGTACGTTGCGGCGAATTATCCGATCAACGAAGTAACGCTCTTTTTCAATAACCGATTGTATCGCGGCAACCGCACTACCAAAGCCCATGCCGATGGTTTTGATGCGTTTGCCTCTCCAAACCTTCCTCCGTTACTGGAAGCAGGTATCCATATTCGTCGTTTGAATACGCCAC  >  CP042583/1532939‑1533495

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A