Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F210 I1 R1 4927 250.2 4002508 96.7% 3870425 266.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,541,794 3 bp→TGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,541,7940AT99.5% 470.3 / NA 199intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base A (0/0);  major base T (113/84);  minor base C (1/0);  total (114/85)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,541,7950CG99.5% 470.6 / ‑6.0 199intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/0);  major base G (114/84);  minor base T (0/1);  total (114/85)
Fisher's exact test for biased strand distribution p-value = 4.27e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.91e-01
*CP0425831,541,7960TA100.0% 475.0 / NA 199intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base A (114/85);  total (114/85)

Only 100 of 199 total aligned reads displayed.

GTAAGGCACTATACGGCA‑CCGCTTGTGGCGCTTTACCGTCA‑TCAGCAATAACCACAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGGCTTTCCAGCCAGCGCGGGGAT‑TCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAG‑GCTCAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAAACTACAGAGCGGATAACTCCAGTTGCCAATAAAGGAAACCCGACTACTCCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGACTGAAAGCACCGACAACCATGCTGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACAT  >  CP042583/1541514‑1542075
                                                                                                                                                                                                                                                                                            |||                                                                                                                                                                                                                                                                                       
agaagggcgaaaaCGGCACCCGTTGGTGGC‑CTTTACCGTCACTCAG‑AAAAACCCCCGGGCGCCAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGAT‑TCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAG‑CGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACagag                                                                                                                                                                                                                                                                                   <  1:655619/277‑1 (MQ=255)
               gCA‑CCGCTTGTGGCGCTTTACCGTCA‑TCAGCAATAACCACAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGAT‑TCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAG‑CGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGtt                                                                                                                                                                                                                                                                    >  1:1695525/1‑289 (MQ=255)
                cA‑CCGCTTGTGGCGCTTTACCGTCA‑TCAGCAATAACCACAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGAT‑TCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAG‑CGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGtt                                                                                                                                                                                                                                                                    >  1:81151/1‑288 (MQ=255)
                cA‑CCGCTTGTGGCGCTTTACCGTCA‑TCAGCAATAACCACAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGAT‑TCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAG‑CGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGtt                                                                                                                                                                                                                                                                    >  1:1396731/1‑288 (MQ=255)
                 a‑CCGCTTGTGGCCCTTAACCGTCA‑TCAGCAATAACCACGGCGGGCAAAGGTTTACCCTTTGGGCGTAGTACCCCTTCTTCTATCCTCCGCATGCCTTTCCCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGAT‑TCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAG‑CGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGc                                                                                                                                                                                                                                                                  <  2:11183/289‑1 (MQ=255)
                  cccGTTTGTGGGGCTTTACCGTCA‑TCAGCAATAACCCCAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCGATACTCCGAATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGAT‑TCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAG‑CGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGc                                                                                                                                                                                                                                                                  <  2:122296/288‑1 (MQ=255)
                     gCTTGTGGCGCTTTACCGTCA‑TCAGCAATAACCACAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGAT‑TCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAG‑CGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCaa                                                                                                                                                                                                                                                               <  1:607285/289‑1 (MQ=255)
                      cTTGTGGCGCTTTACCGTCA‑TCAGCAATAACCACAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGAT‑TCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAG‑CGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGAACAGTTGCCAAt                                                                                                                                                                                                                                                              >  1:686265/1‑289 (MQ=255)
                           ggCGCTTTACCGTCA‑TCAGCAATAACCACAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGAT‑TCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAG‑CGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAg                                                                                                                                                                                                                                                          <  1:250477/288‑1 (MQ=255)
                                             aGCAATAACCACAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGAT‑TCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAG‑CGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGacttgaccac                                                                                                                                                                                                                                        >  1:286948/1‑282 (MQ=255)
                                                  aacccccggcgggcAAAGGTTTCCCCGGTTGGCGTGTAGCGCTTTCTTCTTAACCCCGCATGCCTTGCCCGGCTTCAGGATACCGTCCGCGCGATTCCGGCAGGGGCGGGGAT‑TCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAGG‑CGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTcc                                                                                                                                                                                                                                   <  2:1027844/278‑1 (MQ=255)
                                                  aaaCCACGGGGGTAAAAGTTTTCCCCGTCTGGGGTATGACGTCTTCTTCTATCCTCCGCATGACTTTCTCGGCTTCCGGATCCCGTCCGCGCGATTCCAGCCAGCGCGGGGAT‑TCAGGAAAGTCGCGCCAGGCAAGCGCCGTAGCGATAAG‑CGAAAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTcc                                                                                                                                                                                                                                   <  2:1695525/288‑1 (MQ=255)
                                                         aGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGAT‑TCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAG‑CGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGAtt                                                                                                                                                                                                                             >  1:589033/1‑288 (MQ=255)
                                                              gcAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGAT‑TCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAG‑CGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTAcc                                                                                                                                                                                                                       >  1:1675727/1‑289 (MQ=255)
                                                                                       gACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGAT‑TCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAG‑CGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACagag                                                                                                                                                                                                                                                                                   >  1:1933433/1‑204 (MQ=255)
                                                                                       gACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGAT‑TCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAG‑CGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACagag                                                                                                                                                                                                                                                                                   <  2:1933433/204‑1 (MQ=255)
                                                                                           ccTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGAT‑TCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAG‑CGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACa                                                                                                                                                                                          >  2:730835/1‑289 (MQ=255)
                                                                                                ttctATCCTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGAT‑TCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAG‑CGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTa                                                                                                                                                                                     <  1:730835/289‑1 (MQ=255)
                                                                                                        tCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGAT‑TCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAG‑CGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGGGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTaa                                                                                                                                                                             >  1:191767/1‑289 (MQ=255)
                                                                                                        tCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGAT‑TCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAG‑CGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGaaa                                                                                                                                                                                                    <  1:1591574/266‑1 (MQ=255)
                                                                                                        tCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGAT‑TCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAG‑CGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTaa                                                                                                                                                                             >  1:1904242/1‑289 (MQ=255)
                                                                                                          cGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGAT‑TCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAG‑CGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTACTCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAAACCGACTTGACCACGTTCCACGATTTCTACCCGACAGCTATTCGGTGAAACCAAAAAAGAACGTagacaacaga                                                                                                                                                                            >  2:580183/1‑279 (MQ=255)
                                                                                                          cGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGAT‑TCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAG‑CGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTaaa                                                                                                                                                                            >  1:241994/1‑288 (MQ=255)
                                                                                                          cGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGAT‑TCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAG‑CGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTaaa                                                                                                                                                                            >  1:445225/1‑288 (MQ=255)
                                                                                                          cGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGAT‑TCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAG‑CGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTaaa                                                                                                                                                                            >  2:274425/1‑288 (MQ=255)
                                                                                                          cGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGAT‑TCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAG‑CGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTaaa                                                                                                                                                                            >  2:843176/1‑288 (MQ=255)
                                                                                                          cGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGAT‑TCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAG‑CGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTaaa                                                                                                                                                                            >  2:95596/1‑288 (MQ=255)
                                                                                                          cGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGAT‑TCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAG‑CGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAg                                                                                                                                                                           >  2:1197247/1‑289 (MQ=255)
                                                                                                            cATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGAT‑TCAGGAACGTAGCGCCAGGCCAGCGCCGTAGCGATAAG‑AGACAATATTGCAGGGATAAGCAGTTTTACCCGCCAGTTCAACTCTGCACTAATCAGCGGCGTGAGTCCCATCGTTACCAACGAACAGAGCGGATATGACCAGTTACCAATAAAGGAAACACGACTTGACCAAGTTCCACGATTTCTACCGGGCCTATTTTCGGCGAAACCAGCAAACAGCGTAACCACTAACGc                                                                                                                                                                          >  2:1545474/1‑288 (MQ=255)
                                                                                                            cATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGAT‑TCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAG‑CGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATTAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGc                                                                                                                                                                          >  2:229991/1‑288 (MQ=255)
                                                                                                            cATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGAT‑TCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAG‑CGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAg                                                                                                                                                                                                                                                          >  1:1758877/1‑208 (MQ=255)
                                                                                                            cATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGAT‑TCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAG‑CGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTa                                                                                                                                                                                     >  2:1861949/1‑277 (MQ=255)
                                                                                                              tgccTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGGGCGGGAAT‑TCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAG‑CAACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTcc                                                                                                                                                                       <  1:905533/286‑1 (MQ=255)
                                                                                                               gACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGAT‑TCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAG‑CGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTaa                                                                                                                                                                                    <  1:1868416/275‑1 (MQ=255)
                                                                                                                    tctcGGCTTCCTGATACCGTCCGCGCGATTCCAACCAGCGCGGGGAT‑TCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAG‑CGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGccc                                                                                                                                                                 >  1:333857/1‑289 (MQ=255)
                                                                                                                           ttCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGAT‑TCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAG‑CGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTcc                                                                                                                                                           <  1:1377796/288‑1 (MQ=255)
                                                                                                                                       tccgcgcgattCCAGCCAGCGCGGGGAT‑TCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAG‑CGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCggg                                                                                                                                                                                                                    <  1:1346511/210‑1 (MQ=255)
                                                                                                                                       tccgcgcgattCCAGCCAGCGCGGGGAT‑TCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAG‑CGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATCTTAGGTGAAACCAGCAAACAGCGTAACCATTAAAGAGCCCACACAAACTCCCATCACAAACCg                                                                                                                                               >  2:34099/10‑288 (MQ=255)
                                                                                                                                       tccgcgcgattCCAGCCAGCGCGGGGAT‑TCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAG‑CGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCaaa                                                                                                                                                                                            <  2:1811305/234‑1 (MQ=255)
                                                                                                                                       tccgcgcgattCCAGCCAGCGCGGGGAT‑TCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAG‑CGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCaaa                                                                                                                                                                                            >  1:1811305/10‑243 (MQ=255)
                                                                                                                                       tccgcgcgattCCAGCCAGCGCGGGGAT‑TCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAG‑CGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTcc                                                                                                                                                           >  2:68491/10‑276 (MQ=255)
                                                                                                                                       tccgcgcgattCCAGCCAGCGCGGGGAT‑TCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAG‑CGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACg                                                                                                                                               >  1:1213537/10‑288 (MQ=255)
                                                                                                                                       tccgcgcgattCCAGCCAGCGCGGGGAT‑TCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAG‑CGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACg                                                                                                                                               >  1:895365/10‑288 (MQ=255)
                                                                                                                                       tccgcgcgattCCAGCCAGCGCGGGGAT‑TCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAG‑CGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACg                                                                                                                                               >  1:1545207/10‑288 (MQ=255)
                                                                                                                                       tccgcgcgattCCAGCCAGCGCGGGGAT‑TCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAG‑CGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACg                                                                                                                                               >  2:1986021/10‑288 (MQ=255)
                                                                                                                                       tccgcgcgattCCAGCCAGCGCGGGGAT‑TCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAG‑CGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCAAGTTCCACGATTTCTACCGGGCACATATTCGGTGAAACCAGCAACCAGCGTAACCCGTAAGGCTCCCAGCCCAACTTCCACCAAAAAACgg                                                                                                                                              >  2:302052/10‑289 (MQ=255)
                                                                                                                                        ccgcgcgattCCAGCCAGCGCGGGGAT‑TCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAG‑CGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACggc                                                                                                                                             >  1:1482067/9‑289 (MQ=255)
                                                                                                                                        ccgcgcgattCCAGCCAGCGCGGGGAT‑TCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAG‑CGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACgg                                                                                                                                              <  1:104161/280‑1 (MQ=255)
                                                                                                                                         cgggggattCCGGACAGCGCGGGGAT‑TAAGGAAAGTAGCGCAAGCCAAGCGCCGTAGCGATAAG‑CGACAATATTGCAGGAATAGGCAGTTGAACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACggca                                                                                                                                            <  2:436998/282‑1 (MQ=255)
                                                                                                                                         cgggcgattCCAGCC‑GGGGGGGGATGTCAGGAAAGGAGGCCCAGGCCAGCGCCGTAGCG‑TAAGCGAACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACggca                                                                                                                                            <  2:445225/282‑1 (MQ=255)
                                                                                                                                         cgcgcgattCCAGCCAGCGCGGGGAT‑TCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAG‑CGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACggca                                                                                                                                            <  1:274425/282‑1 (MQ=255)
                                                                                                                                         cgcgcgattCCAGCCAGCGCGGGGAT‑TCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAG‑CGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACggc                                                                                                                                             <  2:1675727/281‑1 (MQ=255)
                                                                                                                                                          cgcgGGGAT‑TCAGGAAAGTAGCGCCAGGCCATCGCCGTAGCGATAAG‑CGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCa                                                                                                                           >  1:1550038/1‑289 (MQ=255)
                                                                                                                                                          cgcgGGGAT‑TCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAG‑CGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGa                                                                                                                                 <  1:543489/283‑1 (MQ=255)
                                                                                                                                                          cgcgGGGAT‑TCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAG‑CGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAACTCCa                                                                                                                           >  1:1792191/1‑289 (MQ=255)
                                                                                                                                                          cgcgGGGAT‑TCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAG‑CGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCa                                                                                                                           >  1:1288921/1‑289 (MQ=255)
                                                                                                                                                          cgcgGGGAT‑TCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAG‑CGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATACTCGGTAAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCACCCCAACTCCCACCACAAAACCGCAGGCAATAAGGAAATCCa                                                                                                                           >  2:1198691/1‑289 (MQ=255)
                                                                                                                                                               ggAT‑TCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAG‑CGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATAtt                                                                                                                       <  1:843176/288‑1 (MQ=255)
                                                                                                                                                                     cAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAG‑CGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAgg                                                                                                                                  >  2:658858/1‑272 (MQ=255)
                                                                                                                                                                     cAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAG‑CGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCggtga                                                                                                                 >  2:317907/1‑286 (MQ=255)
                                                                                                                                                                                  ccaggccagCGCCGTAGCGATAAG‑CGACAAAATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACa                                                                                                    <  1:1725745/289‑1 (MQ=255)
                                                                                                                                                                                       ccagCGCCGTAGCGATAAG‑CGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAACCa                                                                                                >  2:1513614/1‑288 (MQ=255)
                                                                                                                                                                                        cggcgcGGAAGCGATAAG‑CAAAAAGATTGCCGGAATAGGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAACCAtc                                                                                              <  2:1884226/287‑2 (MQ=255)
                                                                                                                                                                                            gcCGTAGCGATAAG‑CGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAACCAtcgagg                                                                                          <  1:1849865/289‑6 (MQ=255)
                                                                                                                                                                                                      ataagcgacAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGCCAACCATCGCGGCAATATaaa                                                                                 >  2:1293686/9‑289 (MQ=255)
                                                                                                                                                                                                      ataagcgaaaaTATTGGAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAACCATCGAGGCAATATGaa                                                                                 <  1:1831861/280‑1 (MQ=255)
                                                                                                                                                                                                        aagcgcaaaTATTGCGGGAATAAGCAGTGGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCTGGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAACCATCGAGGCAATATGaa                                                                                 <  2:1329785/280‑1 (MQ=255)
                                                                                                                                                                                                         agcgacAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAACAGGCCGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAACCATCGAGGCAATATGAAt                                                                                >  1:1954859/6‑287 (MQ=255)
                                                                                                                                                                                                              cAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGAATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAACCATCGAGGCAATATGAATGGCCTCa                                                                         >  1:94946/1‑289 (MQ=255)
                                                                                                                                                                                                                     gCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGa                                                                  <  1:229260/289‑1 (MQ=255)
                                                                                                                                                                                                                        gggATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGACATCCATATTAGGTGAAAAAGCACCGACAACCAACGAGGCACAATGAATGGCCTCAAAGAGGAAGa                                                               >  2:372846/1‑289 (MQ=255)
                                                                                                                                                                                                                         ggATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAAt                                                                                                                                      >  1:1152003/1‑217 (MQ=255)
                                                                                                                                                                                                                          aaaagacggtgttACCCGCAAGTTCCAATCGGCACTATTCGGCGGCGGGAGTCCAATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAAGAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACGAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGaa                                                              <  2:1544127/276‑1 (MQ=255)
                                                                                                                                                                                                                           aTAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGGCCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACg                                                            <  2:817071/289‑1 (MQ=255)
                                                                                                                                                                                                                              aGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCAt                                                         >  1:1280653/1‑289 (MQ=255)
                                                                                                                                                                                                                                   ttttACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAACCATCGAGGCAATATGAATGGCCt                                                                           <  1:1517312/263‑1 (MQ=255)
                                                                                                                                                                                                                                   ttGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAACGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAACTCCATATTCGGTGAGAAAGCACCGACACCCATCGAGGCAATCTGAATGGCCTCATCGAGGCTGAACGCATTTCt                                                     >  2:907046/1‑288 (MQ=255)
                                                                                                                                                                                                                                   ttGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAACCATCGAGGCAATATGaa                                                                                 >  2:1151198/1‑260 (MQ=255)
                                                                                                                                                                                                                                   ttGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAACCATCGAGCCAATATGAATGGCCTCATAGAGGATGAAAGCATTGCt                                                     >  2:1615096/1‑288 (MQ=255)
                                                                                                                                                                                                                                   ttGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTAGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACGCCCATCACAAAACGGCGGGCAATAAGGAAATCCATATTAGGTGACAAAGAACCACAAACCAGCGAGCCAATATGAACGGCCTCCTCGAGTATGAACGCAATTcg                                                     >  2:798970/1‑287 (MQ=255)
                                                                                                                                                                                                                                     gTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCg                                                  >  1:1151084/1‑289 (MQ=255)
                                                                                                                                                                                                                                          cGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCTATATTCGGTGAGAAAGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCgg                                             >  2:1094864/1‑289 (MQ=255)
                                                                                                                                                                                                                                           gCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAACCATCGAGGCAATATGaa                                                                                 >  2:410810/1‑252 (MQ=255)
                                                                                                                                                                                                                                             cAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAACCAtcga                                                                                            <  2:543087/239‑4 (MQ=255)
                                                                                                                                                                                                                                             cAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAACCATCGAGGCAATATGAATGGc                                                                             >  1:1126786/1‑254 (MQ=255)
                                                                                                                                                                                                                                                ttCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAACCATCGAGGCCATATGAAGTGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTg                                        >  2:1814825/1‑288 (MQ=255)
                                                                                                                                                                                                                                                     ctctGCGCGAATCAGCGGCGTTAGTCCCATCGCTATCAATGAAAAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCa                                  <  2:1792191/289‑1 (MQ=255)
                                                                                                                                                                                                                                                      tctGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCaa                                 <  1:684141/289‑1 (MQ=255)
                                                                                                                                                                                                                                                          cACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAACCAtcgagg                                                                                          <  1:1892584/228‑6 (MQ=255)
                                                                                                                                                                                                                                                          cACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAACCAtcgag                                                                                           >  2:1915541/1‑223 (MQ=255)
                                                                                                                                                                                                                                                                tcggcggcgTGAGTCCCGTCGCTATCAATGAACAGGGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGCCCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATgccgcc                       <  2:1358818/286‑1 (MQ=255)
                                                                                                                                                                                                                                                                tCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATgccgcc                       <  1:1115604/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                  aGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGccc                      >  2:1395941/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                  aGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGccc                      >  2:1461699/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                       cgTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAACCATCGAGGCAATATGAATGGc                                                                             >  1:1055226/1‑228 (MQ=255)
                                                                                                                                                                                                                                                                       cgTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAACCATCGAGGCAATATGAATGGc                                                                             <  2:1055226/228‑1 (MQ=255)
                                                                                                                                                                                                                                                                       cgTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAACCATCGAGGCAATATGAATGGCATCACAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATTATCACGCCCACCAg                 >  2:1733095/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                              cccATCGCTAACAATGAACAGGGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCg          <  1:375359/288‑1 (MQ=255)
                                                                                                                                                                                                                                                                                 aTCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCCGCGACCGGTTTTGTCGCCCATGATGCCGCCCACCAGCGCCCCGAGaa      >  2:263501/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                                     cTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAACCATCGAGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACAt  >  1:530649/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                                            |||                                                                                                                                                                                                                                                                                       
GTAAGGCACTATACGGCA‑CCGCTTGTGGCGCTTTACCGTCA‑TCAGCAATAACCACAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGGCTTTCCAGCCAGCGCGGGGAT‑TCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAG‑GCTCAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAAACTACAGAGCGGATAACTCCAGTTGCCAATAAAGGAAACCCGACTACTCCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGACTGAAAGCACCGACAACCATGCTGGCAATATGAATGGCCTCATAGAGGATGAACGCATTTCTGCGACCGGTTTTGTCGCCAATGATGCCGCCCACCAGCGCACCGAGAAACAT  >  CP042583/1541514‑1542075

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A