Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F210 I1 R1 4927 250.2 4002508 96.7% 3870425 266.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,564,652 3 bp→TCA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,564,6520AT98.2% 498.3 / NA 218intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base A (0/0);  major base T (105/108);  minor base G (1/3);  total (106/112)
Fisher's exact test for biased strand distribution p-value = 6.22e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,564,6530GC99.5% 504.4 / NA 218intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/0);  major base C (105/112);  minor base T (1/0);  total (106/112)
Fisher's exact test for biased strand distribution p-value = 4.86e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,564,6540TA99.5% 505.2 / NA 218intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/1);  new base A (106/110);  total (106/112)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 218 total aligned reads displayed.

ATTTGTGATCCTGCTTTCCGGCGGCATTTTTTGCCTAAGCAGCTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGTCGGCCCAACCGAATTTATTACCAACAGCATCATCAATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTAGTTTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCAGTTACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCAGCACCGTCGGTTGCTGGTTCTTCTTTGGCGTAATGGAAAGCTATGCCATTCATCAGTTTATCAATGGCGTAATCAACGTCCCACAGGTGCTGGAAACACTGGGCGGCGAAACAGCTGTACAGCAAGTTCTGATGAGCTTGCCAGCCGGTAAATTGTTCCTCGCCGCATACCTGGGCGTGATGATTATTTTCCT  >  CP042583/1564375‑1564932
                                                                                                                                                                                                                                                                                      |||                                                                                                                                                                                                                                                                                       
  ttGTGATCCTGCTTTCCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGTCGGCCCAACCGAATTTATTACCAACAGCATCATCAATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTgg                                                                                                                                                                                                                                                                             <  1:1281166/289‑1 (MQ=255)
   tgtgATCCTGCTTTCCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGTCGGCCCAACCGAATTTATTACCAACAGCATCATCAATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTCCTGGCTGTGGTGGATCGCATCCAC‑CCCTGGc                                                                                                                                                                                                                                                                            >  2:107140/1‑289 (MQ=255)
   tgtgATCCTGCTTTCCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCATGCTGCCATTACTGGTGCTGATTGTCGGCCCAACCGAATTTATTACCAACAGCATCATCAATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTTATTTACCCGCAACTGGACCGTTTTTTACTGGCTGTGGTGGATCTTATAAAC‑CCCTGGc                                                                                                                                                                                                                                                                            >  1:1166742/1‑289 (MQ=255)
          tttcTTGCCGGGTGCTTTGTTTGACTAAGTTGGTGGATTGGTATCAACAACTGTTTGCAACGTCTGAGCAAATTGGTTGGCTGGGGCGCGTTCCTGCTCCCATTACTGGTGCTGATTGTCGGCCCAACCGAATTTATTACCAACAGCATCATCAATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCaa                                                                                                                                                                                                                                                                     <  2:416114/286‑1 (MQ=255)
            gCTTTCCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATTGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGTCGGCCCAACCGAATTTATTACCAACAGCATCATTAATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATg                                                                                                                                                                                                                                                                   >  1:1133413/1‑289 (MQ=255)
                  cggcggCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGTCGGCCCAACGGAATTTGTTACCAACAGCATCATCAATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGt                                                                                                                                                                                                                                                              >  1:640009/1‑288 (MQ=255)
                    gcggcATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGTCGGCCCAACCGAATTTATTACCAACAGCATCATCAATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCa                                                                                                                                                                                                                                                            >  1:1385449/1‑288 (MQ=255)
                    gcggcATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGTCGGCCCAACCGAATTTATTACCAACAGCATCATCAATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTATACTGGCTGTGGTGGAGCTCATACAC‑CCCTGTGGTAGCAATGTTTGTCa                                                                                                                                                                                                                                                            >  2:132273/1‑288 (MQ=255)
                      ggcATTTGTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGTCGGCCCAACCGAATTTATTACCAACAGCATCATCAATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCAcc                                                                                                                                                                                                                                                          <  2:1372433/288‑1 (MQ=255)
                       gcATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGTCGGCCCAACCGAATTTATTACCAACAGCATCATCAATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCAccc                                                                                                                                                                                                                                                         >  2:939411/1‑288 (MQ=255)
                       gcATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGTCGGCCCAACCGAATTTATTACCAACAGCATCATCAATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGAGCTCATACCC‑CCCTGGCGTCGCAATGTTTGTCActc                                                                                                                                                                                                                                                         >  2:1830593/1‑286 (MQ=255)
                                gcctaagtacgggaaTTGGTATCAACAGCGGTTTGCAACGTCTGAGCAAACTGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGTCGGCCCAACCGAATTTATTACCAACAGCATCATCAATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCcg                                                                                                                                                                                                                                               <  2:90762/275‑1 (MQ=255)
                                gccgaggctcggtgATTGGTATCAACAACGGTTTGCAACGTCTGTGCCAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGTCGGCCCAACCGAATTTATTACCAACAGCATCATCAATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCcg                                                                                                                                                                                                                                               <  2:8717/276‑1 (MQ=255)
                                 ccTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGTCGGCCCAACCGAATTTATTACCAACAGCATCATCAATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGAACCGCTTGGCGATGGTTCATTTACCCGAGACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACCC‑CCCTGGCCTAGAGATTTTTGTCCCCCGCGGTTCAcg                                                                                                                                                                                                                                               >  2:297400/1‑288 (MQ=255)
                                  ctaagctcgtGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGTCGGCCCAACCGAATTTATTACCAACAGCATCATCAATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCcgc                                                                                                                                                                                                                                              <  1:1607434/279‑1 (MQ=255)
                                        tcgtGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGTCGGCCCAACCGAATTTATTACCAACAGCATCATCAATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGt                                                                                                                                                                                                                                        <  1:1523725/285‑1 (MQ=255)
                                        tcgtGGATTCGTAGCAACACCGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGAGTTCCTGCTGCCATTACTGGTGCTGCTTGTCGGCCCAACCGAATTTATTACCACCAGCATCATCAATGCCATCGGCCTGACCACGCAACGCTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGt                                                                                                                                                                                                                                        <  2:1344937/285‑1 (MQ=255)
                                         cgtGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGTCGGCCCAACCGAATTTATTACCAACAGCATCATCAATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTaa                                                                                                                                                                                                                                      <  1:1590074/287‑1 (MQ=255)
                                                tGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGTCGGCCCAACCGAATTTATTACCAACAGCATCATCAATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTaaa                                                                                                                                                                                                                               >  1:1775976/1‑289 (MQ=255)
                                                     tCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGTCGGCCCAACCGAATTTATTACCAACAGCATCATCAATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGt                                                                                                                                                                                                                          <  1:297400/289‑1 (MQ=255)
                                                            cGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGTCGGCCCAACCGAATTTATTACCAACAGCATCATCAATGCCTTCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCaa                                                                                                                                                                                                                                                                     <  2:1489485/239‑1 (MQ=255)
                                                            cGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGTCGGCCCAACCGAATTTATTACCAACAGCATCATCAATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTTGAGTAGCAATGTTTGCCCCCCCCCTTTCCCGCGGTCGTAAGATTAAAGAAGTTACCTgg                                                                                                                                                                                                                   >  2:1889385/1‑289 (MQ=255)
                                                            cGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGTCGGCCCAACCGAATTTATTACCAACAGCATCATCAATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTgg                                                                                                                                                                                                                   >  1:254061/1‑289 (MQ=255)
                                                            cGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGTCGGCCCAACCGAATTTATTACCAACAGCATCATCAATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTgg                                                                                                                                                                                                                   >  2:1816017/1‑289 (MQ=255)
                                                            cGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGTCGGCCCAACCGAATTTATTACCAACAGCATCATCAATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTgg                                                                                                                                                                                                                   >  1:706623/1‑289 (MQ=255)
                                                            cGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGTCGGCCCAACCGAATTTATTACCAACAGCATCATCAATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTgg                                                                                                                                                                                                                   >  1:1902625/1‑289 (MQ=255)
                                                             ggTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGTCGGCCCAACCGAATTTATTACCAACAGCATCATCAATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCcgc                                                                                                                                                                                                                                              >  2:1675879/1‑261 (MQ=255)
                                                                ttGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGTCGGCCCAACCGAATTTATTACCAACAGCATCATCAATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGAc                                                                                                                                                                                                               <  2:287327/289‑1 (MQ=255)
                                                                    aaCGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGTCGGCCCAACCGAATTTATTACCAACAGCATCATCAATGCCATCGGCCTGACCTCGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGa                                                                                                                                                                                                            >  1:1667843/1‑288 (MQ=255)
                                                                         cTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGTCGGCCCAACCGAATTTATTACCAACAGCATCATCAATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGt                                                                                                                                                                                                                          <  1:1693220/269‑1 (MQ=255)
                                                                         cTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGTCGGCCCAACCGAATTTATTACCAACAGCATCATCAATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGt                                                                                                                                                                                                                          >  2:1693220/1‑269 (MQ=255)
                                                                                   tGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGTCGGCCCAACCGAATTTATTACCAACAGCATCATCAATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCAGCACCGt                                                                                                                                                                                            <  1:201613/289‑1 (MQ=255)
                                                                                      ttGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGTCGGCCCAACCGAATTTATTACCAACAGCATCATCAATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGGTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCAGCACCGTCgg                                                                                                                                                                                         >  1:1351906/1‑289 (MQ=255)
                                                                                          ctcgggCGCGTTCCTGCGTCCAGTACTGGTGAGGATTGTCGGCCCAACCGAATTTAGTACCCACAGCATCATCAATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCAGCACCGTCGGTTg                                                                                                                                                                                      <  2:1142624/285‑1 (MQ=255)
                                                                                           tGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGTCGGCCCAACCGAATTTATTACCAACAGCATCATCAATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCAGCACCGTCGGtt                                                                                                                                                                                       >  1:852559/1‑286 (MQ=255)
                                                                                              ggCTCGTTCCTGCTGCCATTACTGGTGCTGATTGTCGGCCCAACCGAATTTATTACCAACAGCATCATCAATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGTTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCAGCACCGTCGGTTGCTgg                                                                                                                                                                                  <  1:132273/288‑1 (MQ=255)
                                                                                              ggCGCGTTCCTGCTGCCATTACTGGTGCTGATTGTCGGCCCAACCGAATTTATTACCAACAGCATCATCAATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCAGCACCGTCGGTTGCTgg                                                                                                                                                                                  <  1:1198715/288‑1 (MQ=255)
                                                                                                    ttCCTGCTGCCATTACTGGTGCTGATTGTCGGCCCAACCGAATTTATTACCAACAGCATCATCAATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCg                                                                                                                                                                                                                                                                           >  2:172732/1‑193 (MQ=255)
                                                                                                          cttccATTACTGGTGCTGATTGTCGGCCCAACCGAATTTATTACCAACAGCATCATCAATGCCATCGGCCTGACCACGCAAACCTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCAGCACCGTCGGTTGCTGGTTCTTCTTTGGCg                                                                                                                                                                     <  1:1079880/286‑1 (MQ=255)
                                                                                                               aTTACTGGTGCTGATTGTCGGCCCAACCGAATTTATTACCAACAGCATCATCAATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCAGCACCGTCGGTTGCTGGTTCTTCTTTGGCGTAATg                                                                                                                                                                >  1:524730/1‑289 (MQ=255)
                                                                                                               aTTACTGGTGCTGATTGTCGGCCCAACCGAATTTATTACCAACAGCATCATCAATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCAGCACCGTCGGTTGCTGGTTCTTCTTTGGCGTAATg                                                                                                                                                                >  1:1813436/1‑289 (MQ=255)
                                                                                                                 tACTGGTGCTGATTGTCGGCCCAACCGAATTTATTACCAACAGCATCATCAATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCAGCACCGTCGGTTGCTGGTTCTTCTTTGGCGTAATGGa                                                                                                                                                              <  1:992899/289‑1 (MQ=255)
                                                                                                                       tGCTGATTGTCGGCCCAACCGAATTTATTACCAACAGCATCATCAATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCAGCACCGTCGGTTGCTGGTTCTTCTTTGGCg                                                                                                                                                                     >  1:837213/1‑276 (MQ=255)
                                                                                                                       tGCTGATTGTCGGCCCAACCGAATTTATTACCAACAGCATCATCAATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCAGCACCGTCGGTTGCTGGTTCTTCTTTGGCg                                                                                                                                                                     <  2:837213/276‑1 (MQ=255)
                                                                                                                       tGCTGATTGTCGGCCCAACCGAATTTATTACCAACAGCATCATCAATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCAGCACCGTCGGTTGCTGGTTCTTCTTTGGCGTAATGGAAAGCTa                                                                                                                                                        >  1:678751/1‑289 (MQ=255)
                                                                                                                         cTGATTGTCGGCCCAACCGAATTTATTACCAACAGCATCATCAATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGt                                                                                                                                                                                                                                        <  1:1027048/207‑1 (MQ=255)
                                                                                                                         cTGATTGTCGGCCCAACCGAATTTATTACCAACAGCATCATCAATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGt                                                                                                                                                                                                                                        >  2:1027048/1‑207 (MQ=255)
                                                                                                                           gATTGTCGGCCCAACCGAATTTATTACCAACAGCATCATCAATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTaa                                                                                                                                                                                                                                      <  2:875295/207‑1 (MQ=255)
                                                                                                                            aTTGTCGGCCCAACCGAATTTATTACCAACAGCATCATCAATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCAGCACCGTCGGTTGCTGGTTCTTCTTTGGCGTAATGGAAAGCTATGCCa                                                                                                                                                   >  1:742027/1‑289 (MQ=255)
                                                                                                                                 cGGCCCAACCGAATTTATTACCAACAGCATCATCAATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCAGCACCGTCGGTTGCTGTTTCTGCTTTGGCGTAATGGCAAGCTATGCCATtcc                                                                                                                                               >  2:1228975/1‑287 (MQ=255)
                                                                                                                                 cGGCCCAACCGAATTTATTACCAACAGCATCATCAATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCAGCACCGTCGGTTGCTGGTTCTTCTTTGGCGTAATGGAAAGCTATGCCATtcat                                                                                                                                              <  1:939411/289‑1 (MQ=255)
                                                                                                                                 cGGCCCAACCGAATTTATTACCAACAGCATCATCAATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCAGCACCGTCGGTTGCTGGTTCTTCTTTGGCGTAATGGAAAGCTATGCCATtcat                                                                                                                                              <  2:766663/289‑1 (MQ=255)
                                                                                                                                           gAATTTATTACCAACAGCATCATCAATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCAGCACCGTCGGTTGCTGGTTCTTCTTTGGCGTAATGGAAAGCTATGCCATTCATCAGTTTATCa                                                                                                                                    <  2:1133413/289‑1 (MQ=255)
                                                                                                                                           gAATTTATTACCAACAGAATCACCAATGCCATCGGCCTGACCACGCAAAACTTCCTGAAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCAGCACCGTCGGTTGCTGGTTCTTCTTTGGCGTAATGGAAAGCTATGCCATTCATCAGTTTATCa                                                                                                                                    <  2:1178091/289‑1 (MQ=255)
                                                                                                                                                 actaCCAACAGCATCATAAATGCCCTCGCCCTGACCACGCAAAACTTCCGGCAACTGAGCTTATTCA‑CCGTTCCGCGTGGCGATGGTTCATTTACCCGCAAGTGGACCGTTTGCTACAGGCTGTGGTGGAGCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCAGCACCGTCGGTTGCTGGTTCTTCTTTGGCGTAATGGAAAGCTATGCCATTCATCAGTTTATCAATGGCg                                                                                                                              <  2:234649/287‑1 (MQ=255)
                                                                                                                                                   taCCAACAGCATCATCAATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCAGCACCGTCGGTTGCTGGTTCTTCTTTGGCGTAATGGAAAGCTATGCCATtcat                                                                                                                                              >  1:1505685/1‑271 (MQ=255)
                                                                                                                                                        aCAGCATCATCAATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCAGCACCGTCGGTTGCTGGTTCTTCTTTGGCg                                                                                                                                                                     >  2:1643540/1‑243 (MQ=255)
                                                                                                                                                            catcatCAATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTg                                                                                                                                                                                                                    >  2:1946262/1‑192 (MQ=255)
                                                                                                                                                            catcatCAATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTg                                                                                                                                                                                                                    <  1:1946262/192‑1 (MQ=255)
                                                                                                                                                            catcatCAATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCAGCACCGTCGGTTGCTGGTTCTTCTTTGGCg                                                                                                                                                                     >  2:734069/1‑239 (MQ=255)
                                                                                                                                                               catcaATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCAGCACCGTCGGTTGCTGGTTCTTCTTTGGCGTAATGGAAAGCTATGCCATTCATCAGTTTAt                                                                                                                                      >  2:571251/1‑267 (MQ=255)
                                                                                                                                                               catcaATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCAGCACCGTCGGTTGCTGGTTCTTCTTTGGCGTAATGGAAAGCTATGCCATTCATCAGTTTAt                                                                                                                                      <  1:571251/267‑1 (MQ=255)
                                                                                                                                                                atcaATGCCATCGGCCTGACCACGGAAAACTTCCTGCAAATGGGCTTATTCA‑CCGATCCGCTTTGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGGGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCAGCACCGTCGGTTGCTGGTTCTTCTTTGGCGTAATGGAAAGCTATGCCATTCATCAGTTTATCAATGGCGTAATCAACGTCCcac                                                                                                               <  2:1651597/289‑1 (MQ=255)
                                                                                                                                                                  caATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCAGCACCGTCGGTTGCTGGTTCTTCTTTGGCGTAATGGAAAGCTATGCCATTCATCAGTTTATCAATGGCGTAATCAACGTCCCACAg                                                                                                             <  2:627124/289‑1 (MQ=255)
                                                                                                                                                                  caATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCAGCACCGTCGGTTGCTGGTTCTTCTTTGGCGTAATGGAAAGCTATGCCATTCATCAGTTTATCAATGGCGTAATCAACGTCCCACAg                                                                                                             <  1:1654742/289‑1 (MQ=255)
                                                                                                                                                                  caATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCAGCACCGTCGGTTGCTGGTTCTTCTTTGGCGTAATGGAAAGCTATGCCATTCATCAGTTTATCAATGGCGTAATCAACGTCCCACAg                                                                                                             <  2:1813436/289‑1 (MQ=255)
                                                                                                                                                                    aTGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCNCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCCGCACCGTCGGTTGCTGGTTCTTCTTTGGCGTAATGGAAAGCTCTGCCATTCATCAGTTTATCAATTGCGTAATCAACGTCCCACAGGt                                                                                                           >  1:100885/1‑289 (MQ=255)
                                                                                                                                                                    aTGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCAGCACCGTCGGTTGCTGGTTCTTCTTTGGCGTAATGGAAAGCTATGCCATTCATCAGTTTATCAATGGCGTAATCAACGTCCCACAGGt                                                                                                           <  1:1582604/289‑1 (MQ=255)
                                                                                                                                                                      gCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCAGCACCGTCGGTTGCTGGTTCTTCTTTGGCGTAATGGAAAGCTATGCCATTCATCAGTTTATCAATGGCGTAATCAACGTCCCACAGGt                                                                                                           >  2:1293034/1‑287 (MQ=255)
                                                                                                                                                                          tCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCAGCACCGTCGGTTGCTGGTTCTTCTTTGGCGTAATGGAAAGCTATGCCATtcat                                                                                                                                              <  1:1822112/248‑1 (MQ=255)
                                                                                                                                                                          tCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGA‑CTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCAGCACCGGCGGTTGCTGGTTCTTCTTTGGCGTAATGGAAAGTCATGCCATTCATCAGTTTATCAATGGCGTATTCAACGTGCCCAAGGTGCTGGaa                                                                                                    >  2:154574/1‑289 (MQ=255)
                                                                                                                                                                              ccTGACCACGCAAACCGTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCCTACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCAGCACCGTCGGTTGCTGGTTCTTCTTTGGCGTAATGGAAAGCTATGCCATTCATCAGTTTATCAATGGCGTAATCAACGTCCCACAGGTGCTGGAAaca                                                                                                 <  2:482708/289‑1 (MQ=255)
                                                                                                                                                                                         aaaaCTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCAGCACCGTCGGTTGCTGGTTCTTCTTTGGCGTAATGGAAAGCTATGCCATTCATCAGTTTATCAATGGCGTAATCAACGTCCCACAGGTGCTGGAAACACTGGGCGGCGa                                                                                      <  2:553967/289‑1 (MQ=255)
                                                                                                                                                                                           atcTTCCTGCAAATTGGGCTCTTCC‑CCGATCCGCTTGGCCATGGTGTATTTACCCCCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGTGACTGATCCTCGGCAGCACCGTCGGTTGCTGGTTCTTCTTTGGCGTAATGGAAAGCTATGCCATTCATCAGTTTATCAATGGCGTAATCAACGTCCCACAGGTGCTGGAAACACTGGGCGGCGaaa                                                                                    <  2:308851/287‑1 (MQ=255)
                                                                                                                                                                                           aaCTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCAGCACCGTCGGTTGCTGGTTCTTCTTTGGCGTAATGGAAAGCTATGCCATTCATCAGTTTATCAATGGCGTAATCAACGTCCCACAGGTGCTGGAAACACTGGGCGGCGaaa                                                                                    <  1:1889266/289‑1 (MQ=255)
                                                                                                                                                                                              tcctgtcAAATTAGCTT‑TTCACCCGATCCGCTTGGCGATTGTTCATTTACCCGCACCTGGACCGTTTTCTCATGGCTGTGGTGGTTCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCAGCACCGTCGGTTGCTGGTTCTTCTTTGGCGTAATGGAAAGCTATGCCATTCATCAGTTTATCAATGGCGTAATCAACGTCCCACAGGTGCTGGAAACACTGGGCGGCGAAACAg                                                                                 <  2:1214348/283‑1 (MQ=255)
                                                                                                                                                                                                  tggaaaTGAGCTTGTTCA‑CCGATCCGCTTGGGGATGGTTCATTTACCCGCAACTGGACCGGTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCAGCACCGTCGGTTGCTGGTTCTTCTTTGGCGTAATGGAAAGCTATGCCATTCATCAGTTTATCAATGGCGTAATCAACGTCCCACAGGTGCTGGAAACACTGGGCGGCGAAACAGCTGt                                                                             <  2:1551986/286‑1 (MQ=255)
                                                                                                                                                                                                       aggAGGTTATGCA‑CCGATGCGCTTGCGGATGGTTCATTTACCCCCAACTGGACCGTTTTCTCCTGGCTGTGGTGTATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGCTTCAATAAGTTATCTGGGGACTGATCCTCGGCAGCACCGTCGGTTGCTGGTTCTTCTTTGGCGTAATGGACAGCTATGCCATTCATCAGTTTATCAAGGGCGTAATCAACGTCCCACAGGTGCTGGAAACACTGGGCGGCGAAACAGCTGTACAGc                                                                        <  2:506714/287‑1 (MQ=255)
                                                                                                                                                                                                       aTGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCAGCACCGTCGGTTGCTGGTTCTTCTTTGGCGTAATGGAAAGCTATGCCATTCATCAGTTTATCAATGGCGTAATCAACGTCCCACAGGTGCTGGAAACACTGGGCGGCGAAACAGCTGTACAGc                                                                        <  1:1293034/289‑1 (MQ=255)
                                                                                                                                                                                                        tGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCAGCACCGTCGGTTGCTGGTTCTTCTTTGGCGTAATGGAAAGCTATGCCATTCATCAGTTTATCAATGGCGTAATCAACGTCCCACAGGTGCTGGAAACACTGGGCGGCGAAACAGCTGTACAGCa                                                                       <  1:808677/289‑1 (MQ=255)
                                                                                                                                                                                                               aTTCA‑CCGATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCAGCACCGTCGGTTGCTGGTTCTTCTTTGGCGTAATGGAAAGCTATGCCATTCATCAGTTTATCAATGGCGTAATCAACGTCCCACAGGt                                                                                                           >  2:1498055/1‑246 (MQ=255)
                                                                                                                                                                                                                       gATCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCAGCACCGTCGGTTGCTGGTTCTTCTTTGGCGTAATGGAAAGCTATGCCATTCATCAGTTTATCaa                                                                                                                                   >  1:1268899/1‑215 (MQ=255)
                                                                                                                                                                                                                        aTCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGGCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCAGCACCGTCGGTTGCTGGTTCTTCTTTGGCGTAATg                                                                                                                                                                >  2:1696498/1‑185 (MQ=255)
                                                                                                                                                                                                                        aTCCGCTTGGCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGGCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCAGCACCGTCGGTTGCTGGTTCTTCTTTGGCGTAATg                                                                                                                                                                <  1:1696498/185‑1 (MQ=255)
                                                                                                                                                                                                                                ggCGATGGTTCATTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCAGCACCGTCGGTTGCTGGTTCTTCTTTGGCGTAATGGAAAGCTATGCCATTCATCAGTTTATCAATGGCGTAATCAACGTCCCACAGGTGCTGGAAACACTGGGCGGCGAAACAGCTGTACAGCAAGTTCTGATGTCGTTGCCAGCCg                                                <  2:678751/289‑1 (MQ=255)
                                                                                                                                                                                                                                     tggttcatttACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCAGCACCGTCGGTTGCTGGTTCTTCTTTGGCGTAATGGAAAGCTATGCCATTCATCAGTTTATCAATGGCGTAATCAACGTCCcac                                                                                                               <  1:888149/214‑1 (MQ=255)
                                                                                                                                                                                                                                             ttACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCAGCACCGTCGGTTGCTGGTTCTTCTTTGGCGTAATGGAAAGCTATGCCATTCATCAGTTTATCAATGGCGTAATCAACGTCCCACAGGTGCTGGAAACACTGGGCGGCGAAACAGCTGTACAGCAAGTTCTGATGTCGTTGCCAGCCGGTAAATTGTTCCt                                   <  1:1717872/289‑1 (MQ=255)
                                                                                                                                                                                                                                             ttACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCAGCACCGTCGGTTGCTGGTTCTTCTTTGGCGTAATGGAAAGCTATGCCATTCATCAGTTTATCAATGGCGTAATCAACGTCCCACAGGTGCTGGAAACACTGGGCGGCGAAACAGCTGTACAGCAAGTTCTGATGTCGTTGCCAGCCGGTAAATTGTTCCt                                   <  1:606922/289‑1 (MQ=255)
                                                                                                                                                                                                                                             ttACCCGCAAATGGACCGTTTTTTACTTGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCAGCACCGTCGGTTGCTGGTTCTTCTTTGGCGTAATGGAAAGCTATGCCATTCATCAGTTTATCAATGGCGTAATCAACGTCCCACAGGTGCTGGAAACACTGGGCGGCGAAACAGCTGTACAGCAAGTTCTGATGTCGTTGCCAGCCGGTAAATTGTTCCt                                   <  2:1276620/289‑1 (MQ=255)
                                                                                                                                                                                                                                             ttACACGCAGCTGGACGGTCTTCTTCTGGCTGTGGTGGATCGCATACAC‑CACTTGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAGGTTATCTGGGGACTGATCCTCGGCGGCCTCGTCCGTGGATGGTTAGTCTTTGGCGTAATGGAAATCTATGCCATTCATCAGTTTCACAAGGGCATAATCCACGTCCCACCGGTGCTGGAAACACTGGGCGGCTAAACAGCTGTACAGCAAGTTCTGATGTCGTTGCCAGCCGGTAAATTGTTCCt                                   <  2:640009/289‑1 (MQ=255)
                                                                                                                                                                                                                                                 ccGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCcg                                                                                                                                                                                                                                               <  2:334120/81‑1 (MQ=255)
                                                                                                                                                                                                                                                 cagCAACTGGACCGTTTTCTACTGGCTGGGGTGGATCTCAT‑CACACCCTGGCGTAGAAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCAGCACCGTCGGTTGCTGGTTCTTCTTTGGCGTAATGGAAAGCTATGCCATTCATCAGTTTATCAATGGCGTAATCAACGTCCCACAGGTGCTGGAAACACTGGGCGGCGAAACAGCTGTACAGCAAGTTCTGATGTCGTTGCCAGCCGGTAAATTGTTCCTcgcc                               <  2:1308292/287‑1 (MQ=255)
                                                                                                                                                                                                                                                    cAACTGGACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCAGCACCGTCGGTTGCTGGTTCTTCTTTGGCGTAATGGAAAGCTATGCCATTCATCAGTTTATCAATGGCGTAATCAACGTCCCACAGGTGCTGGAAACACTGGGCGGCGAAACAGCTGTACAGCAAGTTCTGATGTCGTTGCCAGCCGGTAAATTGTTCCTCGCCGCa                            >  1:291337/1‑289 (MQ=255)
                                                                                                                                                                                                                                                          gACCGTTTTCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCAGCACCGTCGGTTGCTGGTTATTCTTTGGCGTAATGGAAAGCTATGCCATTCATCAGTTTATCAATGGCGTAATCAACGTCCCACAGGTGCTGGCAACACTGGGCGGAGAAACAGCTGTACAGCAAGTTCTGATGTTGTTGCCAGCCGGTAAGTGGTTCCGCGCCGCATACTTg                      >  1:1732795/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                 ttCTACTGGCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCAGCACCGTCGGTTGCTGGTTCTTCTTTGGCGTAATGGAAAGCTATGCCATTCATCAGTTTATCAATGGCGTAATCAACGTCCCACAGGTGCTGGAAACACTGGGCGGCGAAACAGCTGTACAGCAAGTTCTGATGTCGTTGCCAGCCGGTAAATTGTTCCTCGCAGCATACCTGGGCGtga               >  2:743682/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                  gcTACTGGGTGGGGTGGATCTCTTACAC‑CCCTTGCGTAGCAATGTTTGTCACCCGCGGTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCAGCACCGTCGGTTGCTGGTTCTTCTTTGGCGTAATGGAAAGCTATGCCATTCATCAGTTTATCAATGGCGTAATCAACGTCCCACAGGTGCTGGAAACACTGGGCGGCGAAACAGCTGTACAGCAAGTTCTGATGTCGTTGCCAGCCGGTAAATTGTTCCTCGCCGCATACCTGGGCGtgat              <  2:1746333/288‑1 (MQ=255)
                                                                                                                                                                                                                                                                         gCTGTGGTGGATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCAGCACCGTCGGTTGCTGGTTCTTCTTTGGCGTAATGGAAAGCTATGCCATTCATCAGTTTATCAATGGCGTAATCAACGTCCCACAGGTGCTGGAAACACTGGGCGGCGAAACAGCTGTACAGCAAGTTCTGATGTCGTTGCCAGCCGGTAAATTGTTCCTCGCCGCATACCTGGGCGTGATGattatt       >  1:340881/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                              ggtggATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCAGCACCGTCGGTTGCTGGTTCTTCTTTGGCGTAATGGAAAGCTATGCCATTCATCAGTTTATCAATGGCGTAATCAACGTCCCACAGGTGCTGGAAACACTGGGCGGCGAAACAGCTGTACAGCAAGTTCTGATGTCGTTGCCAGCCGGTAAATTGTTCCTCGCCGCATACCTGGGCGtgat              <  1:9269/277‑1 (MQ=255)
                                                                                                                                                                                                                                                                              ggtggATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCAGCACCGTCGGTTGCTGGTTCTTCTTTGGCGTAATGGAAAGCTATGCCATTCATCAGTTTATCAATGGCGTAATCAACGTCCCACAGGTGCTGGAAACACTGGGCGGCGAAACAGCTGTACAGCAAGTTCTGATGTCGTTGCCAGCCGGTAAATTGTTCCTCGCCGCATACCTGGGCGTGATGATTATTTTCCt  <  1:475540/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                              ggtggATCTCATACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCAGCACCGTCGGTTGCTGGTTCTTCTTTGGCGTAATGGAAAGCTATGCCATTCATCAGTTTATCAATGGCGTAATCAACGTCCCACAGGTGCTGGAAACACTGGGCGGCGAAACAGCTGTACAGCAAGTTCTGATGTCGTTGCCAGCCGGTAAATTGTTCCTCGCCGCATACCTGGGCGTGATGATTATTTTCCt  >  2:156543/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                                      |||                                                                                                                                                                                                                                                                                       
ATTTGTGATCCTGCTTTCCGGCGGCATTTTTTGCCTAAGCAGCTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGTCGGCCCAACCGAATTTATTACCAACAGCATCATCAATGCCATCGGCCTGACCACGCAAAACTTCCTGCAAATGAGCTTATTCA‑CCGATCCGCTTGGCGATGGTAGTTTTACCCGCAACTGGACCGTTTTCTACTGGCTGTGGTGGATCAGTTACAC‑CCCTGGCGTAGCAATGTTTGTCACCCGCGTTTCCCGCGGTCGTAAGATTAAAGAAGTTATCTGGGGACTGATCCTCGGCAGCACCGTCGGTTGCTGGTTCTTCTTTGGCGTAATGGAAAGCTATGCCATTCATCAGTTTATCAATGGCGTAATCAACGTCCCACAGGTGCTGGAAACACTGGGCGGCGAAACAGCTGTACAGCAAGTTCTGATGAGCTTGCCAGCCGGTAAATTGTTCCTCGCCGCATACCTGGGCGTGATGATTATTTTCCT  >  CP042583/1564375‑1564932

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A