Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F210 I1 R1 4927 250.2 4002508 96.7% 3870425 266.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,592,007 3 bp→TCA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,592,0070AT99.0% 476.2 / NA 205intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base A (0/0);  major base T (81/121);  minor base G (0/2);  total (82/123)
Fisher's exact test for biased strand distribution p-value = 5.19e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,592,0080GC99.5% 474.2 / NA 205intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/0);  major base C (81/122);  minor base T (1/0);  total (82/123)
Fisher's exact test for biased strand distribution p-value = 4.02e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,592,0090TA97.5% 467.4 / NA 205intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/1);  major base A (78/120);  minor base C (4/1);  total (82/123)
Fisher's exact test for biased strand distribution p-value = 1.60e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 205 total aligned reads displayed.

TTTACTGCGTATCCCGCTGTTTAGTCTTTCTATTTGCACATCTGTTTGCTCTTTCTGCGCACAAATGCTGGCAATGGTTTCCCTGCCCTTTTACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCG‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGAGTCC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGAGTCCCAATAACCACACCATTATTACCTCCGCGCCTCGCGAACGTAGCGGTGGAGCCAGTGGCATGTTAGGAACGGCTCGTCTACTGGGTCAGAGTAGCGGCGCGGCGCTGGTGGCGCTGATGCTAAATCAGTTTGGAGATAATGGTACACACGTCAGCCTGATGGCTGCGGCTATTCTGGCAGTGATTGCTGCCTGTGTCAGTGGT  >  CP042583/1591727‑1592279
                                                                                                                                                                                                                                                                                         |||                                                                                                                                                                                                                                                                               
    tggcttATCCCGCTCTTTTCACTTTCTATTTGCGCCTCTGTTTGCTCTTTCTGCGCACCAATGCTGGCAATGGTTTCCCTGCCCTTTTACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCG‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGata                                                                                                                                                                                                                                                                      <  2:1059506/284‑1 (MQ=255)
    cTGCTTTTCCCGCTGTTTTCACTTTCTCTTTGCACACTTGTTTGGTCTTTCTGCGCACAAATGCTGTCAATGGTTTCCCTGCCCGTTTACCTTCAAACCGTTCTCGGGCGTAGTGAAGTCGAGACAGGTTTACTTCTGACACCG‑TGGCCGTTAGAAACGATGGTGATGGCTCCGCTGGCAGGCTTTTTGATTGGACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGata                                                                                                                                                                                                                                                                      <  2:1499933/289‑1 (MQ=255)
                     ttcacTTTCTATTTGCACATCTGTTTGCTCTTTCTGCGCACAAATGCTGGCAATGGTTTCCCTGCCCTTTTACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCG‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCg                                                                                                                                                                                                                                                     <  1:1938111/285‑1 (MQ=255)
                     ttcacTTTCTATTTGCACATCTGTTTGCTCTTTCTGCGCACAAATGCTGGCAATGGTTTCCCTGCCCTTTTACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCG‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCg                                                                                                                                                                                                                                                     <  2:108771/285‑1 (MQ=255)
                      tcacTTGCTATTTGCACAGCTGGTTGCGCTTTCTGCTAACAAATGCTGGCAATGGTTTCCCTGCCCTTTTACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGACGCAGGTTTACTTCTGACACCG‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCga                                                                                                                                                                                                                                                    <  2:929850/286‑1 (MQ=255)
                        acTTTCTATTTGCACATCTGTTTGCTCTTTCTGCGCACAAATGCTGGCAATGGTTTCCCTGCCCTTTTACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCG‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCgatg                                                                                                                                                                                                                                                  >  2:1898223/2‑289 (MQ=255)
                           ttCTATTTGCACATCTGTTTGCTCTTTCTGCGCACAAATGCTGGCAATGGTTTCCCTGCCCTTTTACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCG‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATc                                                                                                                                                                                                                                               <  1:274797/289‑1 (MQ=255)
                                tttGCACATCTGTTTGCTCTTTCTGCGCACAAATGCTGGCAATGGTGTCCCTGCCCTTTTACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCG‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTAtg                                                                                                                                                                                                                                          <  1:1953567/289‑1 (MQ=255)
                                     acaTCTGTTTGCTCTTTCTGCGCACAAATGCTGGCAATGGTTTCCCTGCCCTTTTACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCG‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATgtggtg                                                                                                                                                                                                                                     <  1:723952/289‑1 (MQ=255)
                                        tCTGTTTGCTCTTTCTGCGCACAAATGCTGGCAATGGTTTGCCTGCCCTTTTACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCG‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGCTTGAACGCGTACATGCAGGATTGTTGGGGGCTTTAGGGTTGTTCATCATGGCTGAGGGTCTTTTTTCCCTGGTTCTGCTTCTCGCGTCACC‑TGCGGATATCAATATTACCTGGCCGTTGATGTTATGTTGTGCTg                                                                                                                                                                                                                                  >  2:663787/1‑289 (MQ=255)
                                        tCTGTTTGCTCTTTCTGCGCACAAATGCTGGCAATGGTTTCCCTGCCCTTTTACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCG‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTg                                                                                                                                                                                                                                  >  1:561422/1‑289 (MQ=255)
                                        tCTGTTTGCTCTTTCTGCGCACAAATGCTGGCAATGGTTTCCCTGCCCTTTTACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCG‑TGGCCGTTAGCAACGATGGTGATGGCCCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTTCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCCTTTTTCCCTGGTTCCTCTGCCCGCCTCCAC‑TGCGGGTACCCATATTATCTGGTCGTTTTTCTTTGTTGGTGCtc                                                                                                                                                                                                                                  >  2:217901/1‑288 (MQ=255)
                                           gTTTGCTCTTTCTGCGCACAAATGCTGGCAATGGTTTCCCTGCCCTTTTACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCG‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGAt                                                                                                                                                                                                                               <  2:19696/289‑1 (MQ=255)
                                           gTTTGCCTTTTCGGCGCCCAATTGGTGGCAATGGTTTCCCTGCCCTTTTACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACCCCG‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGAt                                                                                                                                                                                                                               <  2:418290/289‑1 (MQ=255)
                                            tttGCTCTTTCTGCGCACAAATGCTGGCAATGGTTTCCCTGCCCTTTTACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCG‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCga                                                                                                                                                                                                                                                    >  2:1386890/1‑267 (MQ=255)
                                            tttACTCTGTGTACGCCCAAATACTGTCAATTTTATCTCTTGCCTTTTACCTGCAAACGCTGGACGGTAGTAGTGAAGTACAAACAGGTTTACTTCTGACACCG‑TGGCCGTTAGCAACCGTGGTGATGGCTCCGCTGGCATGCTATTTTATTGATCGCTTACGTTAAGTATTGCAGGGGGCTTTAGAGTTGTTTATCATGGCTGCGGGGATTTTTTCCCGGGTTCTTCTGCCCGCGTCACC‑TGAGGGTATCAATATTATCTGGCCGATGCTCTTATGTGGTGCTGGAtt                                                                                                                                                                                                                              <  2:1524559/289‑1 (MQ=255)
                                                    ttCTGCGCACAAATGCTGGCAATGGTTTCCCTGCCCTTTTACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCG‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCTGGTTTCTG‑TGCCCGCGTCCCCTTGCGG‑TATCAATATTATTCGGCCGGTGATCTTATTTTGTGCTGGATTTGGCTTAtt                                                                                                                                                                                                                     >  1:639953/1‑289 (MQ=255)
                                                    ttCTGCGCACAAATGCTGGCAATGGTTTCCCTGCCCTTTTACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCG‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGAGGATCTGATGCTGTTCTGGATTGGGCTTAt                                                                                                                                                                                                                      >  2:847971/1‑289 (MQ=255)
                                                     tCTGCGCACAAATGCTGGCAATGGTTTCCCTGCCCTTTTACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCG‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGAGATCAATATTTTCTGGCCGTTGATCTTATGTGGTGCTGTATTTGGCTTAtt                                                                                                                                                                                                                     >  2:1292092/1‑289 (MQ=255)
                                                          gcACAAATGCTGGCAATGGTTTCCCTGCCCTTTTACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCG‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCagt                                                                                                                                                                                                                <  1:759515/289‑2 (MQ=255)
                                                           cacaAATGCTGGCAATGGTTTCCCTGCCCTTTTACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCG‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTTTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTATTCTGCCCGCGTCACC‑TGCGGCTATCAATATTATCTGGCCGATGATCTTATGTGGTTCTGGATTTGGCTTATTCCagtc                                                                                                                                                                                                               >  1:1777542/1‑287 (MQ=255)
                                                            acaAATGCTGGCAATGGTTTCCCTGCCCTTTTACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCG‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCagtc                                                                                                                                                                                                               <  1:286086/288‑3 (MQ=255)
                                                                aTGCTGGCAATGGTTTCCCTGCCCTTTTACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCG‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCagtcaccca                                                                                                                                                                                                          <  1:1188677/289‑8 (MQ=255)
                                                                      gCAATGGTTTCCCTGCCCTTTTACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCG‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAAcc                                                                                                                                                                                                    >  1:821053/1‑289 (MQ=255)
                                                                        aaTGGTTTCCCTGCCCTTTTACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCG‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACcac                                                                                                                                                                                                  <  1:667040/289‑1 (MQ=255)
                                                                         aTGGTTTCCCTGCCCTTTTACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCG‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACcaca                                                                                                                                                                                                 <  2:1732174/289‑1 (MQ=255)
                                                                          tGGTTTCCCTGCCCTTTTACCTGCAAACCGTTCTCGGGCGTAGTGAAGTCCAACCAGGTTTACTTCTGACACCG‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCCGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGTCTTTATGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGGTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTTCTGGATTTGGCTTATTCCACTCACCCAATAACccca                                                                                                                                                                                                 >  2:617293/1‑288 (MQ=255)
                                                                           ggTTTCCCTGCCCTTTTACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCG‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACAcc                                                                                                                                                                                               <  2:1660130/289‑1 (MQ=255)
                                                                                cccTGCCCTTTTACCTGCAAACCGTGCTCGGGGGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCG‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCattat                                                                                                                                                                                          <  2:1912647/289‑1 (MQ=255)
                                                                                cccTGCCCTTTTACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCG‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGACTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTATGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACCCCattat                                                                                                                                                                                          >  1:1075200/1‑289 (MQ=255)
                                                                                     cccTTTTACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCG‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTAcc                                                                                                                                                                                      >  2:1817522/1‑288 (MQ=255)
                                                                                      ccTTTTACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCG‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTACCt                                                                                                                                                                                     >  1:1958494/1‑288 (MQ=255)
                                                                                               tGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCG‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTACCTCCGCGCCTc                                                                                                                                                                            >  2:1365909/1‑288 (MQ=255)
                                                                                                gCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCG‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGc                                                                                                                                                                                                                                    >  1:4439/1‑231 (MQ=255)
                                                                                                gCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCG‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGc                                                                                                                                                                                                                                    <  2:4439/231‑1 (MQ=255)
                                                                                                gCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCG‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCagt                                                                                                                                                                                                                >  1:962257/1‑250 (MQ=255)
                                                                                                gCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCG‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCagt                                                                                                                                                                                                                <  2:962257/251‑2 (MQ=255)
                                                                                                  aaaCCGTGCTCGGGCGTAGTGAAGTCGAACCAGGTTTACTTCTGACACCG‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTACCTCCGCGCCTcgcg                                                                                                                                                                         <  1:803580/288‑1 (MQ=255)
                                                                                                   aaCCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCG‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTACCTCCGCGCCTCGCGaa                                                                                                                                                                       <  2:276208/289‑1 (MQ=255)
                                                                                                       gTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCG‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTACCTCCGCGCCTCGCGAACGTa                                                                                                                                                                   <  2:593695/289‑1 (MQ=255)
                                                                                                       gTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCG‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTACCTCCGCGCCTCGCGAACGTa                                                                                                                                                                   <  2:921899/289‑1 (MQ=255)
                                                                                                       gTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCG‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTACCTCCGCGCCTCGCGAACGTa                                                                                                                                                                   <  1:1365909/289‑1 (MQ=255)
                                                                                                        tGCTCGTGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCG‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACTCGTACATGCAGGATTGCTGGGGGCCTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATCTCCACATTATCTTGCCGATGATCTTAGATGGTTCTGGATTTGGCTTAATCCAGGCACCCAATCACCACACCATAATTACCATCGGGCCTCTCGAACGTa                                                                                                                                                                   >  2:1170958/1‑288 (MQ=255)
                                                                                                            cGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCG‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTACCTCCGCGCCTCGCGAACGTAGCGGt                                                                                                                                                              <  1:183252/289‑1 (MQ=255)
                                                                                                                      gAAGTCGAAACAGGTTTACTTCTGACACCG‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTACCTCCGCGCCTCGCGAACGTAGCGGTGGAGCCAGTg                                                                                                                                                    <  2:821053/289‑1 (MQ=255)
                                                                                                                        aggccaaaCAGGGTTTCTTCTTGCACCGTTGGCGGTTGGCAACGTTGGTGATGGTTCCGCTGCCAGGCATTTGGATTGACCGCGTACATGCGGGATTGTTGGGGGCTTTGGGGTTGTTCTTCATGGTGGCGGGGC‑TTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTACCTCCGCGCCTCGCGAACGTAGCGGTGGAGCCAGTGGc                                                                                                                                                  <  2:639953/284‑1 (MQ=255)
                                                                                                                        aGTCGAAACAGGTTTACTTCTGACACCG‑TGGCCGTTGGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTACCTCCGCGCCTCGCGAACGTAGCGGTGGAGCCAGTgg                                                                                                                                                   <  2:1958494/288‑1 (MQ=255)
                                                                                                                        aGTCGAAACAGGTTTACTTCTGACACCG‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTACCTCCGCGCCTCGCGAACGTAGCGGTGGAGCCAGTGGc                                                                                                                                                  <  1:1014596/289‑1 (MQ=255)
                                                                                                                        aGTCGAAACAGGTTTACTTCTGACACCG‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTACCTCCGCGCCTCGCGAACGTAGCGGTGGAGCCAGTGGc                                                                                                                                                  <  1:1898223/289‑1 (MQ=255)
                                                                                                                        aGTCGAAACAGGTTTACTTCTGACACCG‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTACCTCCGCGCCTCGCGAACGTAGCGGTGGAGCCAGTGGc                                                                                                                                                  <  1:1758976/289‑1 (MQ=255)
                                                                                                                         gTCGAAACAGGTTTACTTCTGACACCG‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGata                                                                                                                                                                                                                                                                      <  1:764001/172‑1 (MQ=255)
                                                                                                                         gTCGAAACAGGTTTACTTCTGACACCG‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGata                                                                                                                                                                                                                                                                      >  2:764001/1‑172 (MQ=255)
                                                                                                                         gTCGAAACAGGTTTACTTCTGACACCG‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTACCTCCGCGCCTCGCGAACGTAGCGGTGGAGCCAGTg                                                                                                                                                    <  1:866806/286‑1 (MQ=255)
                                                                                                                         gTCGAAACAGGTTTACTTCTGACACCG‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTACCTCCGCGCCTCGCGAACGTAGCGGTGGAGCCAGTg                                                                                                                                                    >  2:866806/1‑286 (MQ=255)
                                                                                                                                   gTTTACTTCTGACACCG‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTACCTCCGCGCCTCGCGAACGTAGCGGTGGAGCCAGTGGCATGTTAGGAAc                                                                                                                                       >  1:1455806/1‑289 (MQ=255)
                                                                                                                                    tttACTTCTGACACCG‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTACCTCCGCGCCTCGCGAACGTAGCGGTGGAGCCAGTGGCATGTTAGGAAc                                                                                                                                       <  2:57385/288‑1 (MQ=255)
                                                                                                                                    cttACTTCTGACACCG‑TGGCAGTGAGCGACGAGGGTGATGGCTCCGCTGGCAGGCTATTGGGTGGAAGGCGTACATGCAGGATTGCTGGCGGCTTTAGGGTGGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGAGCTTATGTGGTGCTGGATTCGGCTTATTCGAGTCACCCAATAACCACACCATTATTGCCTCCGCGCCTCGCGAACGTAGCGGTGGAGCCAGT‑‑CATGTTAGGAACgg                                                                                                                                     <  2:1075200/287‑1 (MQ=255)
                                                                                                                                     ttACTTCTGACACCG‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTACCTCCGCGCCTCGCGAACGTAGCGGTGGAGCCAGTGGCATGTTAGGAACgg                                                                                                                                     <  1:1867385/289‑1 (MQ=255)
                                                                                                                                        cTTCTGACACCG‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTACCTCCGCGCCTCGCGAACGTAGCGGTGGAGCCAGTGGCATGTTAGGAACGGCtt                                                                                                                                  >  1:1266567/1‑288 (MQ=255)
                                                                                                                                             gACACCG‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTAt                                                                                                                                                                                                                                           <  1:899292/179‑1 (MQ=255)
                                                                                                                                             gACACCG‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTACCTCCGCGCCTCGCGAACGTAGCGGTGGAGCCAGTGGCATGTTAGGAACGGCTCGTCt                                                                                                                              >  1:1724030/1‑288 (MQ=255)
                                                                                                                                               cacCG‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTACCTCCGCGCCTCGCGAACGTAGCGGTGGAGCCAGTGGCATGTTAGGAACGGCTCGTCTAc                                                                                                                            <  1:1306360/288‑1 (MQ=255)
                                                                                                                                               cacCG‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTACCTCCGCGCCTCGCGAACGTAGCGGTGGAGCCAGTGGCATGTTAGGAACGGCTCGTCTAc                                                                                                                            <  1:1151554/288‑1 (MQ=255)
                                                                                                                                               aacCG‑TGGGCGTGGGGAACGGTGGGTAGGGGTCCGCCGGGAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGTGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTACCTCCGCGCCTCGCGAACGTAGCGGTGGAGCCAGTGGCATGTTAGGAACGGCTCGTCTAc                                                                                                                            <  2:1872182/287‑1 (MQ=255)
                                                                                                                                                  cG‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTACCTCCGCGCCTCGCGAACGTAGCGGTGGAGCCAGTGGCATGTTAGGAACGGCTCGGCTACTggg                                                                                                                        >  1:534960/1‑289 (MQ=255)
                                                                                                                                                   g‑TGGCCGTTAGGAACGATTGTGATGGCTCCGCTGGCGGGCTATTTGATTGAACGCGTACATGCAGTATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCTGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCCGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTACCTCCGCGCCTCTCGAACGTAGCGGTGGAGCCAGTGGCATGTTAGGAACGGCTCGTCTACTGGGt                                                                                                                       <  1:909925/289‑1 (MQ=255)
                                                                                                                                                   g‑TGGCCGTTAGCAACGATTGTGGTGGATCCGCTGGCAGGCTCTTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTCGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTACCTCCGCGCCTCGCGAACGTAGCGGTGGAGCCAGTGGCATGTTAGGAACGGCTCGTCTACTGGGt                                                                                                                       <  2:783169/289‑1 (MQ=255)
                                                                                                                                                   g‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGata                                                                                                                                                                                                                                                                      <  2:1834046/146‑1 (MQ=255)
                                                                                                                                                   g‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTACCTCCGCGCCTCGCGAACGTAGCGGTGGAGCCAGTGGCATGTTAGGAACGGCTCGTCTACTGGGt                                                                                                                       <  1:1038646/289‑1 (MQ=255)
                                                                                                                                                      ggCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAAGAACCACACCATTATTACCTCCGCGCCTCGCCAACGTAGCGGTGGAGCCAGGGGCATGTTAGGACCGGCGCGTCCACCggggta                                                                                                                     >  2:243928/1‑286 (MQ=255)
                                                                                                                                                                  cGATGGTGATGGTTCCGCTGGCAGGCTATTGGATTGAACGCTTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTACCTCCGCGCCTCGCGAACGTAGCGGTGGAGCCAGTGGCATGTTAGGAACGGCTCGTCTACTGGGTCAGAGTAgcggcgc                                                                                                         <  2:534960/289‑1 (MQ=255)
                                                                                                                                                                       gTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTACCTCCGCGCCTCGCGAACGTAGCGGTGGAGCCAGTGGCATGTTAGGAACGGCTCGTCTACTGGGTCAGAGTAgcggcgcggc                                                                                                      >  1:612088/1‑287 (MQ=255)
                                                                                                                                                                               tCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGatat                                                                                                                                                                                                                                                                     <  1:219800/120‑1 (MQ=255)
                                                                                                                                                                                ccGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTACCTCCGCGCCTCGCGAACGTAGCGGTGGAGCCAGTGGCATGTTAGGAACGGCTCGTCTACTGGGTCAGAGTAGCGGCGCGGCGCTGGTGgcgc                                                                                           >  1:1995818/1‑289 (MQ=255)
                                                                                                                                                                                 cGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTACCTCCGCGCCTCGCGAACGTAGCGGTGGAGCCAGTGGCATGTTAGGAACGGCTCGTCTACTGGGTCAGAGTAGCGGCGCGGCGCTGGTGGCGCt                                                                                          <  1:999676/289‑1 (MQ=255)
                                                                                                                                                                                 cGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATA‑TATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTACCTCCGCGCCTCGCGAACGTAGCGGTGGAGCCAGTGGCATGTTAGGAAc                                                                                                                                       <  2:1567157/243‑1 (MQ=255)
                                                                                                                                                                                 cGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATA‑TATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTACCTCCGCGCCTCGCGAACGTAGCGGTGGAGCCAGTGGCATGTTAGGAAc                                                                                                                                       >  1:1567157/1‑243 (MQ=255)
                                                                                                                                                                                  gCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTTCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTCTGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTACCTCCTCGCCTCGCGAACGTAGCCGTTGGACCAGTGGCATGTTAGGAACGTCTGGTCTACTGGGTCGGCAGACCGGCGTGGTGGCGGTGgcgcgg                                                                                         >  2:1107275/1‑287 (MQ=255)
                                                                                                                                                                                               ttgattgaACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTACCTCCGCGCCTCGCGAACGTAGCGGTGGAGCCAGTGGCATGTTAGGAACGGCTCGTCTACTGGGTCGGAGTAGCGGCGCGGCGCTGGTGGCGCTGATGCTAAATCAGt                                                                            <  1:1107275/289‑1 (MQ=255)
                                                                                                                                                                                                tgattgaACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTACCTCCGCGCCTCGCGAACGTAGCGGTGGAGCCAGTGGCATGTTAGGAACGGCTCGTCTACTGGGTCAGAGTAGCGGCGCGGCGCTGGTGGCGCTGATGCTAAAt                                                                                <  2:1437952/284‑1 (MQ=255)
                                                                                                                                                                                                tgattgaACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTACCTCCGCGCCTCGCGAACGTAGCGGTGGAGCCAGTGGCATGTTAGGAACGGCTCGTCTACTGGGTCAGAGTAGCGGCGCGGCGCTGGTGGCGCTGATGCTAAAt                                                                                >  1:1437952/1‑284 (MQ=255)
                                                                                                                                                                                                      aaCGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTACCTCCGCGCCTCGCGAACGTAGCGGTGGAGCCAGTGGCATGTTAGGAACGGCTCGTCTACTGGGTCAGAGTAGCGGCGCGGCGCTGGTGGCGCTGATGCTAAATCAGTTTGgaga                                                                     >  1:648002/1‑289 (MQ=255)
                                                                                                                                                                                                        cgcgTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTACCTCCGCGCCTCGCGAACGTAGCGGTGGAGCCAGTGGCATGTTAGGAACGGCTCGTCTACTGGGTCAGAGTAGCGGCGCGGCGCTGGTGGCGCTGATGCTAAATCAGTTTGGAGATa                                                                   <  1:243928/289‑1 (MQ=255)
                                                                                                                                                                                                        cgcgTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTACCTCCGCGCCTCGCGAACGTAGCGGTGGAGCCAGTGGCATGTTAGGAACGGCTCGGCTACTGGGTCAGAGTAGCGGCCCGGCCCTGGTGGCGCTGGTGCTAAATCAGTTTGGAGATa                                                                   >  1:1375783/1‑289 (MQ=255)
                                                                                                                                                                                                         gcgTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTACCTCCGCGCCTCGCGAACGTAGCGGTGGAGCCAGTGGCATGTTAGGAACGGCTCGTCTACTGGGTCAGAGTAGCGGCGCGGCGCTGGTGGCGCTGATGCTAAATCAGTTTGGAGATaa                                                                  <  1:773989/289‑1 (MQ=255)
                                                                                                                                                                                                          cgTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTTCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTACCTCCGCGCCTCGCGAACGTAGCGGTGGAGCCAGTGGCATGTTAGGAACGGCTCGTCTACTGGGTCAGAGTAGCGGCGCGGCGCTGGTGGCGCTGATGCTAAATCAGTTTGGAGATAAt                                                                 >  1:1237206/1‑289 (MQ=255)
                                                                                                                                                                                                                         gCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGata                                                                                                                                                                                                                                                                      >  1:162529/1‑77 (MQ=255)
                                                                                                                                                                                                                         gCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTACCTCCGCGCCTCGCGAACGTAGCGGTGGAGCCAGTGGCATGTTAGGAACGGCTCGTCTACTGGGTCAGAGTAGCGGCGCGGCGCTGGTGGCGCTGATGCTAAATCAGTTTGGAGATAATGGTACACACGTctc                                                   >  2:899443/1‑286 (MQ=255)
                                                                                                                                                                                                                           tGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTAtg                                                                                                                                                                                                                                          >  2:1102949/1‑103 (MQ=255)
                                                                                                                                                                                                                               ggCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTACCTCCGCGCCTCGCGAACGTAGCGGTGGAGCCAGTGGCATGTTAGGAACGGCTCGTCTACTGGGTCAGAGTAGCGGCGCGGCGCTGGTGGCGCTGATGCTAAATCAGGTTGGAGATAATGGTACACACGTCTCGCTGATg                                            >  1:1848032/1‑289 (MQ=255)
                                                                                                                                                                                                                                    tAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTACCTCCGCGCCTCGCGAACGTAGCGGTGGAGCCAGTGGCATGTTAGGAACgg                                                                                                                                     <  2:395201/195‑1 (MQ=255)
                                                                                                                                                                                                                                    tAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTACCTCCGCGCCTCGCGAACGTAGCGGTGGAGCCAGTGGCATGTTAGGAACgg                                                                                                                                     >  1:395201/1‑195 (MQ=255)
                                                                                                                                                                                                                                                  atGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTACCTCCGCGCCTCGCGAACGTAGCGGTGGAGCCAGTGGCATGTTAGGAACGGCTCGTCTACTGGGTCAGAGTAGCGGCGCGGCGCTGGTGGCGCTGATGCTAAATCAGTTTGGAGATAATGGTACACACGTCTCGCTGATGGCTGCGGCTATTCTGGCAg                         <  2:1036356/289‑1 (MQ=255)
                                                                                                                                                                                                                                                      cTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTACCTCCGCGCCTCGCGAACGTAGCGGTGGAGCCAGTGGCATGTTAGGAACGGCTCGTCTACTGGGTCAGAGTAgcggcgcggc                                                                                                      <  2:698088/208‑1 (MQ=255)
                                                                                                                                                                                                                                                      cTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTACCTCCGCGCCTCGCGAACGTAGCGGTGGAGCCAGTGGCATGTTAGGAACGGCCCGTCTACTGGGTCAGAGTAGCGGCGCGGCGCTGGTGGCGCTGAGGCTAAATCAGTTTGGAGATAATGGTACACACGTCTCGCTGATGGCGTCGGCTATTCTGGAAGTGAt                     >  2:1126302/1‑289 (MQ=255)
                                                                                                                                                                                                                                                        gCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTACCTCCGCGCCTCGCGAACGTAGCGGTGGAGCCAGTGGCATGTTAGGAACGGCTCGTCTACTGGGTCAGAGTAGCGGCGCGGCGCTGGTGGCGCTGATGCTAAATCAGTTTGGAGATAATGGTACACACGTCTCGCTGATGGCTGCGGCTATTCTGGCAGTGATtg                   <  1:1516258/289‑1 (MQ=255)
                                                                                                                                                                                                                                                         cGGGGCTTTTTTTCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTACCTCCGCGCCTCGCGAACGTAGCGGTGGAGCCAGTGGCATGTTAGGAACGGCTCGTCTACTGGGTCAGAGTAGCGGCGCGGCGCTGGTGGCGCTGATGCTAAATCAGTTTGGAGATAATGGTACACACGTCTCGCTGATGGCTGCGGCTATTCTGGCAGTGATtg                   <  2:1237206/288‑1 (MQ=255)
                                                                                                                                                                                                                                                              cTTTTTTCCTTGTCTTTGCTGCCCGCGGCACC‑TTCGGATAGCAATGTTTACTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTAATCCAGTCACCCAATAACCACACCATTATTACCTCCGCGCCTCGCGAACGTAGCGGTGGAGCCAGTGGCATGTTAGGAACGGCTCGTCTACTGGGTCAGAGTAGCGGCGCGGCGCTGGTGGCGCTGATGCTAAATCAGTTTGGAGATAATGGTACACACGTCTCGCTGATGGCTGCGGCTATTCTGGCAGTGATTGCTGcc              <  2:1341573/288‑1 (MQ=255)
                                                                                                                                                                                                                                                              cTTTTTTCCCTGGTTCTGCTGCCCGCGTCACC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTACCTCCGCGCCTCGCGAACGTAGCGGTGGAGCCAGTGGCATGTTAGGAACGGCTCGTCTACTGGGTCAGAGTAGCGGCGCGGCGCTGGTGGCGCTGATGCTAAATCAGTTTGGAGATAATGGTACACACGTCTCGCTGATGGCTGCGGCTATTCTGGCAGTGATTGCTGcc              <  1:1126302/288‑1 (MQ=255)
                                                                                                                                                                                                                                                                         ggTTCTGCTGCCCGCGTACAC‑TGCGGATATCAATATTAGCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTACCTCCGCGCCTCGCGAACGTAGCGGTGGAGCCAGTGGCATGTTAGGAACGGCTCGTCTACTGGGTCAGAGTAGCGGCGCGGCGCTGGTGGCGCTGATGCTAAATCAGTTTGGAGATAATGGTACACACGTCTCGCTGATGGCTGCGGCTATTCTGGCAGTGATTGCTGCCTGTGTCAGTGGt  <  2:740381/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                                         |||                                                                                                                                                                                                                                                                               
TTTACTGCGTATCCCGCTGTTTAGTCTTTCTATTTGCACATCTGTTTGCTCTTTCTGCGCACAAATGCTGGCAATGGTTTCCCTGCCCTTTTACCTGCAAACCGTGCTCGGGCGTAGTGAAGTCGAAACAGGTTTACTTCTGACACCG‑TGGCCGTTAGCAACGATGGTGATGGCTCCGCTGGCAGGCTATTTGATTGAACGCGTACATGCAGGATTGCTGGGGGCTTTAGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGAGTCC‑TGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGAGTCCCAATAACCACACCATTATTACCTCCGCGCCTCGCGAACGTAGCGGTGGAGCCAGTGGCATGTTAGGAACGGCTCGTCTACTGGGTCAGAGTAGCGGCGCGGCGCTGGTGGCGCTGATGCTAAATCAGTTTGGAGATAATGGTACACACGTCAGCCTGATGGCTGCGGCTATTCTGGCAGTGATTGCTGCCTGTGTCAGTGGT  >  CP042583/1591727‑1592279

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A