Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F210 I1 R1 4927 250.2 4002508 96.7% 3870425 266.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,670,930 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,670,9300GC99.4% 356.7 / NA 155intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (1/0);  new base C (63/91);  total (64/91)
Fisher's exact test for biased strand distribution p-value = 4.13e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.90e-01
*CP0425831,670,9310CG98.7% 356.2 / NA 155intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/0);  major base G (62/90);  minor base T (1/1);  total (64/91)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,670,9320TA100.0% 367.3 / NA 155intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base A (64/91);  total (64/91)

Only 100 of 155 total aligned reads displayed.

AGCGTCTGCTACGTGCGGGACGAGGTCGGGTGTACCAGGCAATGCTGCCTAACAATGCCCCGACCAGAGCCATAAATAAAAATCCGACCAGTGCCCCTAACCACTTTCCCGCGGTAGAGCCTAAATCGCTTTCAAAT‑CCGCTCACGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑GCTACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCCAGTCAAGACTCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTAATCAATATATTAGCACTGATTACAATTATACCTTTTTATTATTCT  >  CP042583/1670650‑1671184
                                                                                                                                                                                                                                                                                          |||                                                                                                                                                                                                                                                            
aGCGTCTGCTACGTGCGGGACGAGGTCGGGTGTACCAGGCAATGCTGCCTAACAATGCCCCGACCAGAGCCATAAATAAAAATCCGACCAGTGCCCCTAACCACTTTCCCGCGGTAGAGCCTAAATCGCTTTCAAAT‑CCCGACACGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCCGGGCTGCGAGAGACTCCCTCTTACATCTTTGT‑CTAACCGTa                                                                                                                                                                                                                                                        >  2:1357533/1‑289 (MQ=255)
   ggcTGCTCCGTGCGGGGCGAAGTCGGGTGTACCAGGCAATGCTGCCTAACAAAGCCCCGACCAGAGCCATAAATAAAAATCCGCCCAGTGCCCCTAACCCCTTTCCCGCGGTAGAGCCTAAATCGCTTTCAAAT‑CCCGACACGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTAtt                                                                                                                                                                                                                                                      <  2:581544/286‑1 (MQ=255)
   gTCTGCTACGTGCGGGACGAGGTCGGGTGTACCAGGCAATGCTGCCTAACAATGCCCCGACCAGAGCCATAAATAAAAATCCGACCAGTGCCCCGAACCACTTTCCCTCGGTAGAGCCTAAATCGCTTTCAAAT‑CCCGACACGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTAtt                                                                                                                                                                                                                                                      <  1:1889442/288‑1 (MQ=255)
             tGCGGGACGAGGTCGGGTGTACCAGGCAATGCTGCCTAACAATGCCCCGACCAGAGCCATAAATAAAAATCCGACCAGTGCCCCTAACCACTTTCCCGCGGTAGAGCCTAAATCGCTTTCAAAT‑CCCGACACGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTgaga                                                                                                                                                                                                                                           >  2:814593/1‑289 (MQ=255)
             tGCGGGACGAGGTCGGGTGTACCAGGCAATGCTGCCTAACAATGCCCCGACCAGAGCCATAAATAAAAATCCGACCAGTGCCCCTAACCACTTTCCCGCGGTAGAGCCTAAATCGCTTTCAAAT‑CCCGACACGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTgag                                                                                                                                                                                                                                            <  2:1934843/288‑1 (MQ=255)
               cGGGACGAGGTCGGGTGTACCAGGCAATGCTGCCTAACAATGCCCCGACCAGAGCCATAAATAAAAATCCGACCAGTGCCCCTAACCACTTTCCCGCGGTAGAGCCTAAATCGCTTTCAAAT‑CCCGACACGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATa                                                                                                                                                                                                                                         >  1:496428/1‑289 (MQ=255)
                  gACGAGGTCGGGTGTACCAGGCAATGCTGCCTAACAATGCCCCGACCAGAGCCATAAATAAAAATCCGACCAGTGCCCCTAACCACTTTCCCGCGGTAGAGCCTAAATCGCTTTCAAAT‑CCCGACACGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAAc                                                                                                                                                                                                                                       >  2:1808937/1‑288 (MQ=255)
                  gACGAGGTCGGGTGTACCAGGCAATGCTGCCTAACAATGCCCCGACCAGAGCCATAAATAAAAATCCGACCAGTGCCCCTAACCACTTTCCCGCGGTAGAGCCTAAATCGCTTTCAAAT‑CCCGACACGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCCCTCTTCCACCTTTGTCGAACCCGTA‑TCCATTTTGAAATAAc                                                                                                                                                                                                                                       >  2:14025/1‑288 (MQ=255)
                  gACGAGGTCGGGTGTACCAGGCAATGCTGCCTAACAATGCCCCGACCAGAGCCATAAATAAAAATCCGACCAGTGCCCCTAACCACTTTCCCGCGGTAGAGCCTAAATCGCTTTCAAAT‑CCCGACACGGGGGCATCGGGAATCCGGCTCATCACACAGATGTAACGCGCCATTGCCAAGACGAAATAGCCACACCATGTATATAAAGCCTACAAAGCCAGTTTGCCGCCAGCGCTGCGAGCGATGCTCCCTTCCATCTTTGT‑CGAACCGTAGTCCAttttagaataac                                                                                                                                                                                                                                       >  2:1494989/1‑280 (MQ=255)
                       ggcagggTGTACCGAGGAATGCTGACTAACAATGCCCCGACCAGAGCCATAAATAAAAATCCGACCAGTGCCCCTAACCACTTTCCCGCGGTAGAGCCTAAATCGCTTTCAAAT‑CCCGACACGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGa                                                                                                                                                                                                                                  <  2:49307/284‑1 (MQ=255)
                       ggTCGGGTGTACCAGGCAATGCTGCCTAACAATGCCCCGACCAGAGCCATAAATAAAAATCCGACCAGTGCCCCTAACCACTTTCCCGCGGTAGAGCCTAAATCGCTTTCAAAT‑CCCGACACGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGaa                                                                                                                                                                                                                                 >  2:1409971/1‑289 (MQ=255)
                        gTCGGGTGTACCAGGCAATGCTGCCTAACAATGCCCCGACCAGAGCCATAAATAAAAATCCGACCAGTGCCCCTAACCACTTTCCCGCGGTAGAGCCTAAATCGCTTTCAAAT‑CCCGACACGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGaa                                                                                                                                                                                                                                 <  1:225066/288‑1 (MQ=255)
                         tCGGGTGTACCAGGCAATGCTGCCTAACAATGCCCCGACCAGAGCCATAAATAAAAATCCGACCAGTGCCCCTAACCACTTTCCCGCGGTAGAGCCTAAATCGCTTTCAAAT‑CCCGACCCGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCGCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGcaaa                                                                                                                                                                                                                               >  1:1277200/1‑289 (MQ=255)
                            ggTGTACCAGGCAATGCTGCCTAACAATGCCCCGACCAGAGCCATAAATAAAAATCCGACCAGTGCCCCTAACCACTTTCCCGCGGTAGAGCCTAAATCGCTTTCAAAT‑CCCGACACGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTc                                                                                                                                                                                                                            >  1:313690/1‑289 (MQ=255)
                               gtACCAGGACATGCTGCCTAACAATGCCCCGAACAGAGCACTAAATAAAAATCCGACCAGTGCCCCTAACCACTTTCCCGCGGTAGAGCCTAAATCGCTTTCAAAT‑CCCGACACGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCTGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGa                                                                                                                                                                                                                         <  2:1462885/289‑1 (MQ=255)
                                 aCCAGGCAATGCTGCCTAACAATGCCCCGACCAGAGCCATAAATAAAAATCCGACCAGTGCCCCTAACCACTTTCCCGCGGTAGAGCCTAAATCGCTTTCAAAT‑CCCGACACGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACt                                                                                                                                                                                                                       <  1:1745924/289‑1 (MQ=255)
                                 aCCAGGCAATGCTGCCTAACAATGCCCCGACCAGAGCCATAAATAAAAATCCGACCAGTGCCCCTAACCACTTTCCCGCGGTAGAGCCTAAATCGCTTTCAAAT‑CCCGACACGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACt                                                                                                                                                                                                                       <  2:496428/289‑1 (MQ=255)
                                 aCCAGGCAATGCTGCCTAACAATGCCCCGACCAGAGCCATAAATAAAAATCCGACCAGTGCCCCTAACCACTTTCCCGCGGTAGAGCCTAAATCGCTTTCAAAT‑CCCGACACGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACt                                                                                                                                                                                                                       <  1:1409971/289‑1 (MQ=255)
                                 aCCAGGCAATGCTGCCTAACAATGCCCCGACCAGAGCCATAAATAAAAATCCGACCAGTGCCCCTAACCACTTTCCCGCGGTAGAGCCTAAATCGCTTTCAAAT‑CCCGACACGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACt                                                                                                                                                                                                                       <  1:14025/289‑1 (MQ=255)
                                  ccAGGCAATGCTGCCTAACAATGCCCCGACCAGAGCCATAAATAAAAATCCGACCAGTGCCCCTAACCACTTTCCCGCGGTAGAGCCTAAATCGCTTTCAAAT‑CCCGACACGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACtt                                                                                                                                                                                                                      >  2:1062196/1‑289 (MQ=255)
                                  ccAGGCAATGCTGCCAAACAATGCCCCGACCAGAGCCATAAATAAAAAGCCGCCCAGGGCCCCTAACCACTTTCCCGCGGTAGAGCCTAAGTCGCTTTCAAAT‑CCCGACACGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACt                                                                                                                                                                                                                       <  1:1384586/288‑1 (MQ=255)
                                       cactgctgcCTAACAATGCCCCGACCAGAGCCATAAATAAAAATCCGACCAGTGCCCCTAACCACTTTCCCGCGGTAGAGCCTAAATCGCTTTCAAAT‑CCCGACACGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAg                                                                                                                                                                                                                    <  1:466338/283‑1 (MQ=255)
                                       cAATGCAGCCTAACAAGGCCCCGACCAGAGACATAAATAAAAAGCCGACCGGTGCCCCTAACCACTTTCCCGCGGTAGAGCCTAAGTCGGTTTCAAAT‑CCCGACACGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTa                                                                                                                                                                                                                  <  2:1617873/288‑1 (MQ=255)
                                          tgctgcCTAACAATGCCCCGACCAGAGCCATAAATAAAAATCCGACCAGTGCCCCTAACCACTTTCCCGCGGTAGAGCCTAAATCGCTTTCAAAT‑CCCGACACGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACtat                                                                                                                                                                                                              >  2:1091124/1‑289 (MQ=255)
                                          tgctgcCTAACAATGCCCCGACCAGAGCCATAAATAAAAATCCGACCAGTGCCCCTAACCACTTTCCCGCGGTAGAGCCTAAATCGCTTTCAAAT‑CCCGACACGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACtat                                                                                                                                                                                                              >  2:506240/1‑289 (MQ=255)
                                            ctgcCTAACAATGCCCCGACCAGAGCCATAAATAAAAATCCGACCAGTGCCCCTAACCACTTTCCCGCGGTAGAGCCTAAATCGCTTTCAAAT‑CCCGACACGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACtatta                                                                                                                                                                                                            >  1:1113702/1‑289 (MQ=255)
                                             tgcCTAACAATGCCCCGACCAGAGCCATAAATAAAAATCCGACCAGTGCCCCTAACCACTTTCCCGCGGTAGAGCCTAAATCGCTTTCAAAT‑CCCGACACGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGttgctgaag                                                                                                                                                                                                           <  1:841243/289‑9 (MQ=255)
                                                    cAATGCCCCGACCAGAGCCATAAATAAAAATCCGACCAGTGCCCCTAACCACTTTCCCGCGGTAGAGCCTAAATCGCTTTCAAAT‑CCCGACACGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACtatt                                                                                                                                                                                                             >  1:1273416/1‑280 (MQ=255)
                                                      aTGCCCCGACCAGAGCCATAAATAAAAATCCGACCAGTGCCCCTAACCACTTTCCCGCGGTAGAGCCTAAATCGCTTTCAAAT‑CCCGACACGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCCTTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTAAGACTTAGTCCTATTATTTGTTaaaa                                                                                                                                                                                                  >  2:1046404/1‑289 (MQ=255)
                                                         ccccGACCAGAGCCATAAATAAAAATCCGACCAGTGCCCCTAACCACTTTCCCGCGGTAGAGCCTAAATCGCTTTCAAAT‑CCCGACACGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTc                                                                                                                                                                                               >  1:1463142/1‑289 (MQ=255)
                                                            cGACCAGAGCCATAAATAAAAATCCGACCAGTGCCCCTAACCACTTTCCCGCGGTAGAGCCTAAATCGCTTTCAAAT‑CCCGACACGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTcaca                                                                                                                                                                                            <  1:506889/289‑1 (MQ=255)
                                                              aCCAGAGCCATAAATAAAAATCCGACCAGTGCCCCTAACCACTTTCCCGCGGTAGAGCCTAAATCGCTTTCAAAT‑CCCGACACGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACAtt                                                                                                                                                                                          >  2:222955/1‑289 (MQ=255)
                                                                  aacccATAAAAAAAAATCCGACCAGTGCCCCTCGCCACTTTCCCGCGGTAGGGCCTAAAGCGCTTTCAAAT‑CCCGACACGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACAttttt                                                                                                                                                                                       <  2:1144254/285‑1 (MQ=255)
                                                                   agCCATAAATAAAAATCCGACCAGTGCCCCTAACCACTTTCCCGCGGTAGAGCCTAAATCGCTTTCAAAT‑CCCGACACGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTcc                                                                                                                                                                                     >  1:1289544/1‑289 (MQ=255)
                                                                        taaataaaAATCCGACCAGTGCCCCTAACCACTTTCCCGCGGTAGAGCCTAAATCGCTTTCAAAT‑CCCGACACGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTca                                                                                                                                                                                              >  1:572880/1‑275 (MQ=255)
                                                                        taaataaaAATCCGACCAGTGCCCCTAACCACTTTCCCGCGGTAGAGCCTAAATCGCTTTCAAAT‑CCCGACACGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTca                                                                                                                                                                                              <  2:572880/275‑1 (MQ=255)
                                                                        taaataaaAATCCGACCAGTGCCCCTAACCACTTTCCCGCGGTAGAGCCTAAATCGCTTTCAAAT‑CCCGACACGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGAGCCATTGCCTAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCCGCGAGCGAGCCCCTCTTCCATCTTTGT‑CGAACAGTATTCCATTTTGAGCTAACCCGGAAAATTCAGACTTCGTTCTTTTATTGTATAAAAGTCACATTTTTCCACAtt                                                                                                                                                                                >  2:1403701/1‑289 (MQ=255)
                                                                           ataaaAATCCGACCAGTGCCCCTAACCACTTTCCCGCGGTAGAGCCTAAATCGCTTTCAAAT‑CCCGACACGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGa                                                                                                                                                                             <  1:1808937/289‑1 (MQ=255)
                                                                             aacaacccGACCAGGTCCCCTCACCACTTTCCCGCGGTAGAGCCTAAATCGCTTTCAAAT‑CCCGACACGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATg                                                                                                                                                                           <  2:1149027/283‑1 (MQ=255)
                                                                             aaaaaTCCGACCAGTGCCCCTAACCACTTTCCCGCGGTAGAGCCTAAATCGCTTTCAAAT‑CCCGACACGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAAACCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATg                                                                                                                                                                           >  1:1984902/1‑289 (MQ=255)
                                                                               aaaTCCGACCAGTGCCCCTAACCACTTTCCCGCGGTAGAGCCTAAATCGCTTTCAAAT‑CCCGACACTGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTAtg                                                                                                                                                                                                          <  1:1085805/256‑1 (MQ=255)
                                                                               aaaTCCGACCAGTGCCCCTAACCACTTTCCCGCGGTAGAGCCTAAATCGCTTTCAAAT‑CCCGACACGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGa                                                                                                                                                                          >  2:867011/1‑288 (MQ=255)
                                                                               aaaTCCGACCAGTGCCCCTAACCACTTTCCCGCGGTAGAGCCTAAATCGCTTTCAAAT‑CCCGACACGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAg                                                                                                                                                                         <  2:1302198/289‑1 (MQ=255)
                                                                                aaTCCGACCAGTGCCCCTAACCACTTTCCCGCGGTAGAGCCTAAATCGCTTTCAAAT‑CCCGACACGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGc                                                                                                                                                                        <  1:796633/289‑1 (MQ=255)
                                                                                                       cTTTCCCGCGGTAGAGCCTAAATCGCTTTCAAAT‑CCCGACACGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCCAGTCAAGACTCAATCAtttttt                                                                                                                                                 >  1:1649691/1‑289 (MQ=255)
                                                                                                        tttCCCGCGGTAGAGCCTAAATCGCTTTCAAAT‑CCCGACACGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCCAGTCAAGACTCAATCATTTTTTg                                                                                                                                                >  1:1002800/1‑289 (MQ=255)
                                                                                                        tttCCCGCGGTAGAGCCTAAATCGCTTTCAAAT‑CCCGACACGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCCAGTCAAGACTCAATCATTTTTTg                                                                                                                                                <  1:1972397/289‑1 (MQ=255)
                                                                                                        tttCCCGCGGTAGAGCCTAAATCGCTTTCAAAT‑CCCGACACGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCCAGTCAAGACTCAATCATTTTTTg                                                                                                                                                >  2:1972397/1‑289 (MQ=255)
                                                                                                              gcgGTAGAGCCTAAATCGCTTTCAAAT‑CCCGACACGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCCAGTCAAGACTCAATCATTTTTTGAACaaa                                                                                                                                          <  1:210877/289‑1 (MQ=255)
                                                                                                              gcgGTAGAGCCTAAATCGCTTTCAAAT‑CCCGACACGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCCAGTCAAAACTCAAACATTTTTTGaaaaaa                                                                                                                                          >  2:912527/1‑289 (MQ=255)
                                                                                                               cgGTAGAGCCTAAATCGCTTTCAAAT‑CCCGACACGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTcaca                                                                                                                                                                                            >  1:1514859/1‑238 (MQ=255)
                                                                                                                  tAGAGCCTAAATCGCTTTCAAAT‑CCCGACACGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCCAGTCAAGACTCAATCATTTTTTGAACAAATAGa                                                                                                                                      >  1:1911365/1‑289 (MQ=255)
                                                                                                                     agCCTAAATCGCTTTCAAAT‑CCCGACACGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCcaca                                                                                                                                                                                  >  2:1735669/1‑242 (MQ=255)
                                                                                                                      gCCTAAATCGCTTTCAAAT‑CCCGACACGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAg                                                                                                                                                                         <  1:1969952/250‑1 (MQ=255)
                                                                                                                      gCCTAAATCGCTTTCAAAT‑CCCGACACGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAg                                                                                                                                                                         >  2:1969952/1‑250 (MQ=255)
                                                                                                                           aaTGGCTTTCAAATACCGCTC‑CGGGGCCCACGGGAACCCGGCTCACACCCCAGCTGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACATAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCCAGTCAAGACTCAATCATTTTTTGAACAAAGAGATAAATTTTg                                                                                                                             <  2:1527137/289‑1 (MQ=255)
                                                                                                                                cTTTCAAAT‑CCCGACACGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTcaca                                                                                                                                                                                            <  1:1548861/221‑1 (MQ=255)
                                                                                                                                cTTTCAAAT‑CCCGACACGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGACGCCAGGGCTGCGAGAGAGTCTCGCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCGGACTTAGTACTATTATGTGGTAAAAGTCACATTTTTCCACATTGGATGAGCCAGTCAAGACTCAATCATTTTTTGAACAAATAGATAAATTTTGCGCa                                                                                                                         >  1:696186/1‑288 (MQ=255)
                                                                                                                                      aaatcccgacACGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCCAGTCAAGACTCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCa                                                                                                                   <  1:912527/280‑1 (MQ=255)
                                                                                                                                      aaatcccgacACGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCCAGTCAAGACTCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCa                                                                                                                   <  1:1357533/280‑1 (MQ=255)
                                                                                                                                        atcccgacACGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCCAGTCAAGACTCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGt                                                                                                                 <  1:1062196/282‑1 (MQ=255)
                                                                                                                                        aacccggcACGGGGGCCTCGGGAATCCAGCTCATCACCCGGATGTAACCCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGCAAGCCCACAAAGCCAGTTTGCCGCCAGGGCAGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCTTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCTCATTTTTCCACATTGGATGAGCCAGTCAAGACTCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGt                                                                                                                 <  2:208920/282‑1 (MQ=255)
                                                                                                                                            cgacACGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTca                                                                                                                                                                                              >  1:1037867/4‑208 (MQ=255)
                                                                                                                                                                tCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCCAGTCAAGACTCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAg                                                                                         <  2:649864/289‑1 (MQ=255)
                                                                                                                                                                   ggCTCATCACCCAGATTTAACGCGCCATTGCCCAAACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCCAGTCAAGACTCAATCATTTGTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGa                                                                                      <  1:330517/289‑1 (MQ=255)
                                                                                                                                                                        atcaCCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTAtt                                                                                                                                                                                                                                                      <  2:151149/124‑1 (MQ=255)
                                                                                                                                                                               aGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCCAGTCAAGACTCAATCATTTTTTGAACAAATAGATAAATTTTGCGCaa                                                                                                                        <  1:387454/243‑1 (MQ=255)
                                                                                                                                                                                    tAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCCAGTCAAGACTCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATtttattt                                                                              >  1:176884/1‑280 (MQ=255)
                                                                                                                                                                                    tAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCCAGTCAAGACTCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATtttattt                                                                              <  2:176884/280‑1 (MQ=255)
                                                                                                                                                                                     aaCGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCCAGTCAAGACTCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGata                                                                    <  2:1289544/289‑1 (MQ=255)
                                                                                                                                                                                         cgcCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCCAGTCAAGACTCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCg                                                                 >  2:122402/1‑288 (MQ=255)
                                                                                                                                                                                           ccATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGa                                                                                                                                                                             >  2:2258/1‑178 (MQ=255)
                                                                                                                                                                                           ccATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGa                                                                                                                                                                             <  1:2258/178‑1 (MQ=255)
                                                                                                                                                                                                       cGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCCAGTCAAGACTCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCAt                                                  <  1:909437/289‑1 (MQ=255)
                                                                                                                                                                                                          aaTCGCCACACGCTGTCTGGCAAGGCCACAAAGCCAGTTGGCCGCCAGGTCTGCGAGAGAATCTCTCTTCCATCTGTGT‑CGATCCGTATTCCATTTTGAGATAGCCCTGAAAAGTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCCAGTCAAGACTCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTa                                               <  2:1277200/289‑1 (MQ=255)
                                                                                                                                                                                                           aTAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCCAGTCAAGACTCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTaa                                              >  2:890441/1‑289 (MQ=255)
                                                                                                                                                                                                             aGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCCAGTCAAGACTCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTAATc                                            <  1:867011/289‑1 (MQ=255)
                                                                                                                                                                                                               ccaacccATTTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCAGTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCCAGTCAAGACTCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTAATCaa                                          <  2:647511/284‑1 (MQ=255)
                                                                                                                                                                                                                cacacaCTGTATAGCAAGCCCACCAAGACAGTTTTCCGCCAGGGCTGCTAGAGTGTCTCTCTTCCATCTTGGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTTGATGAGCCAGTTAAGACTCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTAATCaa                                          <  2:1596329/288‑1 (MQ=255)
                                                                                                                                                                                                                cacaCCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCCAGTCAAGACTCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTAATCaa                                          <  1:122402/288‑1 (MQ=255)
                                                                                                                                                                                                                cacaCCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCCAGTCAAGACTCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTAATCaa                                          <  2:1866359/288‑1 (MQ=255)
                                                                                                                                                                                                                cacaCCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCCAGTCAAGACTCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTAATCaa                                          <  2:313690/288‑1 (MQ=255)
                                                                                                                                                                                                                   acCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCCAGTCAAGACTCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAACAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTAATCAatata                                      >  1:1596329/1‑289 (MQ=255)
                                                                                                                                                                                                                    ccATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCCAGTCAAGACTCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTAATCAatatat                                     >  1:180951/1‑289 (MQ=255)
                                                                                                                                                                                                                         tataGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCCAGTCAAGACTCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTAATCAATATATTAGCa                                <  2:1002800/289‑1 (MQ=255)
                                                                                                                                                                                                                          ataGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCCAGTCAAGACTCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTAATCAATATATTAGCa                                <  2:1984902/288‑1 (MQ=255)
                                                                                                                                                                                                                             gAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCCAGTCAAGACTCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTAATCAATATATTAGCACTGa                            >  2:828216/1‑289 (MQ=255)
                                                                                                                                                                                                                              aaaGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCCAGTCAAGACTCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTaa                                                       <  1:1346880/261‑1 (MQ=255)
                                                                                                                                                                                                                              aaaGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCCAGTCAAGACTCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTaa                                                       >  2:1346880/1‑261 (MQ=255)
                                                                                                                                                                                                                                 gCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCCAGTCAAGACTCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTAATCaa                                          >  1:1645380/1‑271 (MQ=255)
                                                                                                                                                                                                                                  cccACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTca                                                                                                                                                                                              >  1:212819/1‑122 (MQ=255)
                                                                                                                                                                                                                                   ccACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCCAGTCAAGACTCAATCATTTTTTGAACAAATAGATAAATTTTgcgc                                                                                                                          >  1:591354/1‑189 (MQ=255)
                                                                                                                                                                                                                                            cAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCCAGTCAAGACTCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTAATCAATATATTAGCACTGATTACAATTATACCt              <  2:1229888/288‑1 (MQ=255)
                                                                                                                                                                                                                                               tttGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCCAGTCAAGACTCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAg                                                                                         >  1:1221768/1‑210 (MQ=255)
                                                                                                                                                                                                                                                ttGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCCAGTCAAGACTCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTAATCAATATATTAGCACTGATTACAATTATACCTTTtta         <  1:506240/289‑1 (MQ=255)
                                                                                                                                                                                                                                                       cAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCCAGTCAAGACTCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTAATCAATATATTAGCACTGATTACAATTATACCTTTTTATTATTCt  <  2:180951/289‑1 (MQ=255)
                                                                                                                                                                                                                                                               cGAGAGAGTCTCTCTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACt                                                                                                                                                                                                                       <  2:1867764/68‑1 (MQ=255)
                                                                                                                                                                                                                                                                       tctctcTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCCAGTCAAGACTCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTAATCAATATATTAGCa                                >  2:1097146/1‑243 (MQ=255)
                                                                                                                                                                                                                                                                       tctctcTTCCATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCCAGTCAAGACTCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTAATCAATATATTAGCa                                <  1:1097146/243‑1 (MQ=255)
                                                                                                                                                                                                                                                                                cATCTTTGT‑CGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCCAGTCAAGACTCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTAATCAatatat                                     >  2:351191/1‑229 (MQ=255)
                                                                                                                                                                                                                                                                                          |||                                                                                                                                                                                                                                                            
AGCGTCTGCTACGTGCGGGACGAGGTCGGGTGTACCAGGCAATGCTGCCTAACAATGCCCCGACCAGAGCCATAAATAAAAATCCGACCAGTGCCCCTAACCACTTTCCCGCGGTAGAGCCTAAATCGCTTTCAAAT‑CCGCTCACGGGGGCATCGGGAATCCGGCTCATCACCCAGATGTAACGCGCCATTGCCCAGACGAAATAGCCACACCATGTATAGAAAGCCCACAAAGCCAGTTTGCCGCCAGGGCTGCGAGAGAGTCTCTCTTCCATCTTTGT‑GCTACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCCAGTCAAGACTCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTAATCAATATATTAGCACTGATTACAATTATACCTTTTTATTATTCT  >  CP042583/1670650‑1671184

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A