Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F210 I1 R1 4928 340.1 5480506 96.9% 5310610 252.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 616,856 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP042583616,8560GC99.2% 882.4 / NA 375intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (1/2);  new base C (188/184);  total (189/186)
Fisher's exact test for biased strand distribution p-value = 6.21e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP042583616,8570CG99.2% 881.6 / NA 375intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (1/0);  major base G (188/183);  minor base T (0/3);  total (189/186)
Fisher's exact test for biased strand distribution p-value = 1.22e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01
*CP042583616,8580TA98.9% 872.1 / NA 375intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/1);  major base A (187/179);  minor base G (0/4);  total (189/186)
Fisher's exact test for biased strand distribution p-value = 5.88e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 375 total aligned reads displayed.

AGCGGTACGCACGGTGGAGGTAGAGGCGTTCTGTTCATGGTCAGCGTGCAGGATCAGAATACGGTCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGG‑CTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTGCTCAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGGCTGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGGCTGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAG‑CAGGATGTAACAAACTTCCAGGTAGTTAGAATCGGTCGCCAGCTGATCGATCGGGAAACCGCGGTGCAGCAAAATACCTTCATCACCATCAATAAAAGTAA  >  CP042583/616577‑617133
                                                                                                                                                                                                                                                                                         |||                                                                                                                                                                                                                                                                                    
               gaaGGTAGAGGCGTTCTGTTCATGGTCAGCGTGCAGGATCGGAATACGGTCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGGACGGCGTGGAGAACATCATATTCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGG‑CTGACCACTGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAgc                                                                                                                                                                                                                                                                <  1:735823/287‑1 (MQ=255)
                  ggTAGAGGCGTTCTGTTCATGGTCAGCGTGCAGGATCAGAATACGGTCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGG‑CTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAgcgc                                                                                                                                                                                                                                                              <  2:534394/288‑1 (MQ=255)
                   gTAGAGGCGTTCTGTTCATGGTCAGCGTGCAGGATCAGAATACGGTCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGG‑CTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAgcgcg                                                                                                                                                                                                                                                             <  1:1967878/288‑1 (MQ=255)
                     agagGCGTTCTGTTCATGGTCAGCGTGCAGGATCAGAATACGGTCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGG‑CTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGcc                                                                                                                                                                                                                                                           <  2:1040184/288‑1 (MQ=255)
                        ggCGTTCTGTTCATGGTCAGCGTGCAGGATCAGAATACGGTCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGG‑CTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTa                                                                                                                                                                                                                                                       >  1:903133/1‑289 (MQ=255)
                          cGTTCTGGTCAGGGTCGGCGTGCAGGATCAAAATACGGTCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGG‑CTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTaa                                                                                                                                                                                                                                                      <  2:142225/288‑1 (MQ=255)
                            ttCTGTTCATGGTCAGCGTGCAGGATCAGAATACGGTCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGG‑CTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATa                                                                                                                                                                                                                                                    >  1:677905/1‑288 (MQ=255)
                              cTGTTCATGGTCAGCGTGCAGGATCAGAATACGGTCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGG‑CTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACca                                                                                                                                                                                                                                                 <  2:2577151/289‑1 (MQ=255)
                                                      cAGAATACGGTCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGG‑CTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATgcgag                                                                                                                                                                                                                         >  1:1638213/1‑285 (MQ=255)
                                                             cGGTCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGG‑CTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGTCGGAACGCGGCAATTGCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGACGCCAGCGCGCCGGTAATACCAACCATGACTGCCATgggcagcgagtcgcgag                                                                                                                                                                                                                  >  2:972663/1‑275 (MQ=255)
                                                             cGGTCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGG‑CTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGACAGAACGCCGCCAGCGCGCCGGTAATACCACAACTGACTGCCCTTGGacgcgagtcgggac                                                                                                                                                                                                                  >  2:2173026/1‑276 (MQ=255)
                                                             cGGTCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGG‑CTGACCAATGGAATACTGGTAACCCATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTGACACA‑CCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAAGAACACACATGAATGCCAGTGGaggcgagttgcga                                                                                                                                                                                                                   >  2:1696548/1‑276 (MQ=255)
                                                                tCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGG‑CTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGa                                                                                                                                                                                                               >  1:542611/1‑289 (MQ=255)
                                                                tCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGG‑CTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGa                                                                                                                                                                                                               >  1:2711910/1‑289 (MQ=255)
                                                                tCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGG‑CTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGa                                                                                                                                                                                                               >  1:1576791/1‑289 (MQ=255)
                                                                 ccATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGG‑CTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGaa                                                                                                                                                                                                              >  1:703159/1‑289 (MQ=255)
                                                                          gTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGG‑CTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCAt                                                                                                                                                                                                                                   <  1:2523617/259‑1 (MQ=255)
                                                                          gTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGG‑CTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGaa                                                                                                                                                                                                     >  1:1509069/1‑289 (MQ=255)
                                                                            tCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGG‑CTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAg                                                                                                                                                                                                                                                                 >  2:723838/1‑227 (MQ=255)
                                                                            tCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGG‑CTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGa                                                                                                                                                                                                               >  1:1010795/1‑277 (MQ=255)
                                                                            tCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGG‑CTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGAATGCGAGTCGCGACGGAAAGCATGGAACa                                                                                                                                                                                                   >  1:2576876/1‑289 (MQ=255)
                                                                                      gATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGG‑CTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAgcgc                                                                                                                                                                                                                                                              >  1:1438614/1‑220 (MQ=255)
                                                                                      gATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGG‑CTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAgcgc                                                                                                                                                                                                                                                              <  2:1438614/220‑1 (MQ=255)
                                                                                      gATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGG‑CTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTaa                                                                                                                                                                                          >  2:2396610/1‑288 (MQ=255)
                                                                                           aCTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGG‑CTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGc                                                                                                                                                                                     >  1:2654870/1‑288 (MQ=255)
                                                                                                   cGGTTCGCACGGCGTGGAGGACATCATAGTCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATAG‑CTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGTGGATc                                                                                                                                                                            <  1:1209500/289‑1 (MQ=255)
                                                                                                            cGGCGTGGAGAACATCATATTCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGG‑CTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGa                                                                                                                                                                   <  1:980551/289‑1 (MQ=255)
                                                                                                              gCGTGGAGAACATCATATTCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGG‑CTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGGTGATCAGGGTATGACg                                                                                                                                                                 >  2:1924030/1‑289 (MQ=255)
                                                                                                                  ggAGAACATCATATTCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGG‑CTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGt                                                                                                                                                              <  1:1340085/288‑1 (MQ=255)
                                                                                                                         atcatATTCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGG‑CTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAg                                                                                                                                                      >  2:1748838/1‑289 (MQ=255)
                                                                                                                         atcatATTCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGG‑CTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCCTGTGGATCATGGTATGACGGGGCACCGGAg                                                                                                                                                      >  2:479170/1‑289 (MQ=255)
                                                                                                                           catATTCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGG‑CTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGtt                                                                                                                                                    >  1:2214638/1‑289 (MQ=255)
                                                                                                                              atTCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGG‑CTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAgcgcg                                                                                                                                                                                                                                                             <  2:1219883/181‑1 (MQ=255)
                                                                                                                              atTCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGG‑CTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACggg                                                                                                                                                                                             <  2:189917/245‑1 (MQ=255)
                                                                                                                               ttCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGG‑CTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTaa                                                                                                                                                <  2:2229977/289‑1 (MQ=255)
                                                                                                                               ttCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGG‑CTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTaa                                                                                                                                                <  2:677905/289‑1 (MQ=255)
                                                                                                                                tCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGG‑CTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAgcgc                                                                                                                                                                                                                                                              >  1:1259758/1‑178 (MQ=255)
                                                                                                                                tCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGG‑CTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGt                                                                                                                                                                                 >  1:288885/1‑255 (MQ=255)
                                                                                                                                 cAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGG‑CTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAAt                                                                                                                                              <  1:569932/289‑1 (MQ=255)
                                                                                                                                  aGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGG‑CTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATAGAACAGACGGGTAATCTGCTCGTg                                                                                                                                                                                >  1:2444846/1‑254 (MQ=255)
                                                                                                                                    gAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGG‑CTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCg                                                                                                                                           >  1:16668/1‑289 (MQ=255)
                                                                                                                                       gTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGG‑CTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACa                                                                                                                                                                                                   <  1:123741/230‑1 (MQ=255)
                                                                                                                                          aCCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGG‑CTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCAt                                                                                                                                       >  1:2041588/1‑287 (MQ=255)
                                                                                                                                           gcGGCGTAGGAGAGCTGATTGCGGAGGTAAAGAGATGGACTCA‑CAAAGCAATACTTGTACCACATCGCGGCCAGGGTAGTCATTTTCGACAACAGCCGGAGCGCGGCGATTTCAGGCTGACGAGGATTGTTA‑ACATCCAGCTTGTCGTGAGAGAACGCCGCCAGCACGCAGGTGATACGACACAGGACTGCCATTGGAGGCGAGTAGCGGCGGAAAGCATGGAACAGACGGGTTATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACt                                                                                                                                    <  2:2495267/288‑1 (MQ=255)
                                                                                                                                                         acggTTGCGCGGGTAAACAAATGG‑ATGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCgg                                                                                                                       <  2:1271899/285‑1 (MQ=255)
                                                                                                                                                         aTCGTTGCGCGGGTAAACAAATGG‑CTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTc                                                                                                                                                                                   >  2:1662250/1‑228 (MQ=255)
                                                                                                                                                         aTCGTTGCGCGGGTAAACAAATGG‑CTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATa                                                                                                                                      <  2:2260775/273‑1 (MQ=255)
                                                                                                                                                         aTCGTTGCGCGGGTAAACAAATGG‑CTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGt                                                                                                                      >  1:650792/1‑289 (MQ=255)
                                                                                                                                                              tGCGCGGGTAAACAAATGG‑CTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGttttt                                                                                                                  <  1:1988841/288‑1 (MQ=255)
                                                                                                                                                                cgcgGGTAAACAAATGG‑CTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCa                                                                                                                >  1:117438/1‑288 (MQ=255)
                                                                                                                                                                   gggTAAACAAATGG‑CTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCAt                                                                                                            >  1:136908/1‑289 (MQ=255)
                                                                                                                                                                    ggTAAACAAATGG‑CTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCAt                                                                                                            <  2:1576791/288‑1 (MQ=255)
                                                                                                                                                                     gTAAACAAATGG‑CTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCAtt                                                                                                           <  2:2654870/288‑1 (MQ=255)
                                                                                                                                                                         aCAAATGG‑CTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTcag‑ca                                                                                                     <  1:183262/289‑1 (MQ=255)
                                                                                                                                                                               gg‑CTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGa                                                                                                                                                                                                               <  1:1411255/178‑1 (MQ=255)
                                                                                                                                                                               gg‑CTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAAt                                                                                                                                              <  2:1253748/243‑1 (MQ=255)
                                                                                                                                                                               gg‑CTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAG‑CAGGATGt                                                                                               >  2:1998052/1‑289 (MQ=255)
                                                                                                                                                                               gg‑CTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAG‑CAGGATGt                                                                                               >  1:811684/1‑289 (MQ=255)
                                                                                                                                                                               gg‑CTGACCAATGGAATACTTGTAACACATAGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCAACGTAGTGTTAAATACGTCATACTGTTCCTGAGTCGGCTGTTCGCCATTCAG‑CAGGATGt                                                                                               >  1:507085/1‑289 (MQ=255)
                                                                                                                                                                                     aCCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGTGGAt                                                                                                                                                                             <  2:2709098/207‑1 (MQ=255)
                                                                                                                                                                                      ccAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAG‑CAGGATGTAACaaa                                                                                         <  2:811684/289‑1 (MQ=255)
                                                                                                                                                                                              aTACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAG‑CAGGATGTAACAAACTTCCAgg                                                                                 <  1:2413309/289‑1 (MQ=255)
                                                                                                                                                                                              aTACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAG‑CAGGATGTAACAAACTTCCAgg                                                                                 <  2:903133/289‑1 (MQ=255)
                                                                                                                                                                                              aTACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAG‑CAGGATGTAACAAACTTCCAgg                                                                                 <  2:1981103/289‑1 (MQ=255)
                                                                                                                                                                                              aTACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAG‑CAGGATGTAACAAACTTCCAg                                                                                  <  1:113752/288‑1 (MQ=255)
                                                                                                                                                                                                 cTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAG‑CAGGATGTAACAAACTTCCAGGTAg                                                                              >  2:2478974/1‑289 (MQ=255)
                                                                                                                                                                                                    gTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACCTCCAGCGAGTCGTGCTAGAACGACGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGACGCGAGTCGCGACGGAAAGCAGGGAACAGACGGGTAATCTGCTCGTGGGTCATGGTATGTCGGGTCACCGGAAGTCTAAATTCGCCATACTGTTCCTGAGTCGGTTTTTCACCATTCAGTCGGGAT‑TAACAAACTTCCTGGTTGTTa                                                                           >  2:579572/1‑289 (MQ=255)
                                                                                                                                                                                                    gTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATTGTATGACGGGTCACCGTAGTTTTAAATTCGTCATa                                                                                                                                      >  1:1441499/1‑231 (MQ=255)
                                                                                                                                                                                                    gTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAG‑CAGGATGTAACAAACTTCCAGGTAGTTa                                                                           >  1:2246462/1‑289 (MQ=255)
                                                                                                                                                                                                        cacaTCGGGGCCATGGTTGGCATTTTCGACAGCAGGCGGACCTCGGCAATTTCCCGGGGACACGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCAGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAG‑CAGGATGTAACAAACTTCCAGGTAGTTAGAAt                                                                       <  2:1013257/289‑1 (MQ=255)
                                                                                                                                                                                                        cacaTCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGAATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAG‑CAGGATGTAACAAACTTCCAGGTAGTTAGAAt                                                                       <  1:1028205/289‑1 (MQ=255)
                                                                                                                                                                                                           aTCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTcag                                                                                                        >  2:314976/1‑254 (MQ=255)
                                                                                                                                                                                                           aTCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAG‑CAGGATGTAACAAACTTCCAGGTAGTTAGAAt                                                                       <  1:2338359/286‑1 (MQ=255)
                                                                                                                                                                                                           aTCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAG‑CAGGATGTAACAAACTTCCAGGTAGTTAGAAt                                                                       >  2:2338359/1‑286 (MQ=255)
                                                                                                                                                                                                           aTCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAG‑CAGGATGTAACAAACTTCCAGGTAGTTAGAATCgg                                                                    >  1:2158546/1‑289 (MQ=255)
                                                                                                                                                                                                           aTCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATAACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGCGTCGGTTTTTCa                                                                                                                >  1:1306079/1‑246 (MQ=255)
                                                                                                                                                                                                           aTCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGCGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCCCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCCGCTCCTGGATCATGGTCTGACGGGGCACCGTACTTTTAAATTCGTCATACTGTACCTGAGCCGGCTCTTCACCATTCAG‑CAGGATGTAACAAACTTCGCGGCAGGTAGAAACgg                                                                    >  2:1488791/1‑289 (MQ=255)
                                                                                                                                                                                                            tCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAAt                                                                                                                                                                                         <  2:1396303/172‑1 (MQ=255)
                                                                                                                                                                                                            tCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGt                                                                                                                                                                                 >  1:779695/1‑180 (MQ=255)
                                                                                                                                                                                                            tCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGt                                                                                                                                                                                 <  2:779695/180‑1 (MQ=255)
                                                                                                                                                                                                            tCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAG‑CAGGATGTAACAAACTTCCAg                                                                                  <  1:361560/274‑1 (MQ=255)
                                                                                                                                                                                                            tCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAG‑CAGGATGTAACAAACTTCCAGGTAGTTAGAATCgg                                                                    >  2:1647776/1‑288 (MQ=255)
                                                                                                                                                                                                             cgcgGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGTTGCTCCTGGTATGACgg                                                                                                                                                                >  2:2204333/1‑196 (MQ=255)
                                                                                                                                                                                                             cgcgGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAG‑CAGGATGGAACAAACTTTCAGGTAGTTAGAATCggc                                                                   >  2:1828670/1‑287 (MQ=255)
                                                                                                                                                                                                               cgGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAAt                                                                                                                                              >  1:1791613/1‑212 (MQ=255)
                                                                                                                                                                                                                          ggCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGc                                                                                                                                                                                     <  1:2474489/162‑1 (MQ=255)
                                                                                                                                                                                                                                ttcggcgacagggcgAACGCGTCACTTTCACGGGGACGGTGATTGTTA‑ACATCCAGCTAGTCGTGATAGAGCGCCGACAGCGCGCCGGTAATCCCACACATGACTGCCATTGGATGCGAGTCTCGACGTAAAGCATGGAACAGACGGGTATTCTGCTCGTTGATCATGGTATGACTGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTAACCATTCAG‑CAGGATGTAACAAACTTCCAGGTCGTGAGAATCGGTCGCCAGCTGATCTATCGGGa                                               <  2:245609/275‑1 (MQ=255)
                                                                                                                                                                                                                                      agcagGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAG‑CAGGATGTAACAAACTTCCAGGTAGTTAGAATCGGTCGCCAGCTGATCGATCGGGAAACcgc                                         >  2:2729463/1‑289 (MQ=255)
                                                                                                                                                                                                                                        cagGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTcag‑ca                                                                                                     >  1:1904127/1‑227 (MQ=255)
                                                                                                                                                                                                                                         agGCGGAACGCGGCAATTTCACGGTGACGGGGAGTGTTA‑ACATCCAGCGAGGCGTGAGAGCACGCCGCCAGCGCGACGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAG‑CAGGATGTAACAAACTTCCAGGTAGTTAGAATCGGTCGCCAGCTGATCGATCGGGAAACcg                                          <  2:794966/285‑1 (MQ=255)
                                                                                                                                                                                                                                         agGCGGAACGCGGCAATTGCACGGGGACGGGGATTGTTA‑ACATCCGGCGAGTCGGGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAG‑CAGGATGTAACAAACTTCCAGGTAGTTAGAATCGGTCGCCAGCTGATCGATCGGGAAACcg                                          <  2:2041588/285‑1 (MQ=255)
                                                                                                                                                                                                                                          ggCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACcaca                                                                                                                                                                                                                                               >  2:1162992/1‑88 (MQ=255)
                                                                                                                                                                                                                                                aCGGGGGAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGGGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAG‑CAGGATGTAACAAACTTCCAGGTAGTTAGAATCGGTCGCCAGCTGATCGATCGGGAAACCGCGGTgcagca                                <  2:1345643/288‑1 (MQ=255)
                                                                                                                                                                                                                                                     gCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAG‑CAGGATGTAACAAACTTCCAGGTAGTTAGAATCGGTCGCCAGCTGATCGATCGGGAAACCGCGGTGCAGCAAAATa                           >  1:789530/1‑288 (MQ=255)
                                                                                                                                                                                                                                                             aCGGTGGAGAGGATTGTTA‑ACCTCCAGCGGGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAG‑CAGGATGTAACAAACTTCCAGGTAGTTAGAATCGGTCGCCAGCTGATCGATCGGGAAACCGCGGTGCAGCAAAATACCTtcatca                  <  2:664303/289‑1 (MQ=255)
                                                                                                                                                                                                                                                             aCGGTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAG‑CAGGATGTAACAAACTTCCAGGTAGTTAGAATCGGTCGCCAGCTGATCGATCGGGAAACCGCGGTGCAGCAAAATACCTtcatca                  <  1:1714955/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                gTGACGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAG‑CAGGATGTAACAAACTTCCAGGTAGTTAGAATCGGTCGCCAGCTGATCGATCGGGAAACCGCGGTGCAGCaaaa                             >  1:2175099/1‑275 (MQ=255)
                                                                                                                                                                                                                                                                    cGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGTGGAt                                                                                                                                                                             >  1:1088250/1‑128 (MQ=255)
                                                                                                                                                                                                                                                                    cGAGGATTGTTA‑ACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGTGGAt                                                                                                                                                                             <  2:1088250/128‑1 (MQ=255)
                                                                                                                                                                                                                                                                          tcgTTA‑CCATCCAGCGCGTCGGGATAGACCGCAGCCAGCGCGCCGGTAATACCACCCATGACTGCCATTGGGTGCGAGTAGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAG‑CAGGATGTAACAAACTTCCAGGTAGTTAGAATCGGTCGCCAGCTGATCGATCGGGAAACCGCGGTGCAGCAAAATACCTTCATCACCATCAATAAAAg     <  2:369321/287‑1 (MQ=255)
                                                                                                                                                                                                                                                                                         |||                                                                                                                                                                                                                                                                                    
AGCGGTACGCACGGTGGAGGTAGAGGCGTTCTGTTCATGGTCAGCGTGCAGGATCAGAATACGGTCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGG‑CTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTGCTCAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTA‑ACATCCAGGCTGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGGCTGTCGCGACGGAAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAG‑CAGGATGTAACAAACTTCCAGGTAGTTAGAATCGGTCGCCAGCTGATCGATCGGGAAACCGCGGTGCAGCAAAATACCTTCATCACCATCAATAAAAGTAA  >  CP042583/616577‑617133

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A