Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F210 I1 R1 4928 340.1 5480506 96.9% 5310610 252.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,508,151 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,508,1510GC99.4% 792.5 / NA 342intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (1/1);  new base C (200/139);  total (201/141)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,508,1520CG99.1% 799.6 / NA 342intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (1/2);  new base G (200/139);  total (201/141)
Fisher's exact test for biased strand distribution p-value = 5.71e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,508,1530TA99.4% 818.1 / ‑5.2 342intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base A (200/140);  minor base G (1/1);  total (201/141)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

Only 100 of 342 total aligned reads displayed.

AATAACCAGGATTAATCTGTATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGAATAACACATACTCTACATCATGGGTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGGCTGTGGCGAGTAATTTGGCTAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCA‑GCGTACAGGCCAGCGCGCCAAAATGTCTGGCGCTGAAATGGGTAAACGTACCACCAGGTTCCTGATGGAACACCAGCGCCTCCAGCCCCGCCGCACCCAGCCACGTCAGAAATTTCTCGTCCCAGGGAATGTCGCGTTGCG  >  CP042583/1507872‑1508431
                                                                                                                                                                                                                                                                                       |||                                                                                                                                                                                                                                                                                        
aaTAACCAGGATTAATCTTTATTACTTTATAAGAAATCAACTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGAATAACACATACTCTACATCATGGGTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAacca‑cc                                                                                                                                                                                                                                                                                  <  2:1493107/289‑1 (MQ=255)
aaTAACCAGGATTAATCTGTATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGAATAACACATACTCTACATCATGGGTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAacca‑c                                                                                                                                                                                                                                                                                   >  2:853545/1‑288 (MQ=255)
                cTGTATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGAATAACACATACTCTACATCATGGGTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAgcggcg                                                                                                                                                                                                                                                                  <  1:486477/289‑1 (MQ=255)
                   tATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGAATAACACATACTCTACATCATGGGTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑ccc                                                                                                                                                                                                                                                                                 <  1:1494060/271‑1 (MQ=255)
                   tATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGAATAACACATACTCTACATCATGGGTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGgtg                                                                                                                                                                                                                                                               >  2:2705148/1‑289 (MQ=255)
                             taAGAAAGCAACTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGAATAACACATACTCTACATCATGGGTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGAt                                                                                                                                                                                                                                                     >  2:522583/1‑289 (MQ=255)
                             taAGAAAGCAACTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGAATAACACATACTCTACATCATGGGTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCCGCGGTGGTCTCCCGAt                                                                                                                                                                                                                                                     >  2:1503598/1‑289 (MQ=255)
                                   aGCAACTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGAATAACACATACTCTACATCATGGGTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGac                                                                                                                                                                                                                                               >  1:1910765/1‑289 (MQ=255)
                                     cAACTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGAATAACACATACTCTACATCATGGGTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGaca                                                                                                                                                                                                                                              >  1:1577497/1‑288 (MQ=255)
                                          tAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGAATAACACATACTCTACATCATGGGTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCa                                                                                                                                                                                                                                        <  1:2728529/289‑1 (MQ=255)
                                          tAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGAATAACACATACTCTACATCATGGGTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCa                                                                                                                                                                                                                                        <  2:1244225/289‑1 (MQ=255)
                                               cccGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGAATAACACATACTCTACATCATGGGTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGGGTTCTCACGATACCGACACTCCCACCCGa                                                                                                                                                                                                                                   >  2:360548/1‑289 (MQ=255)
                                                  gCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGAATAACACATACTCTACATCATGGGTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATa                                                                                                                                                                                                                                 >  1:383477/1‑288 (MQ=255)
                                                  gCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGAATAACACATACTCTACATCATGGGTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTCGTCTCACGATCCCGCCACTCCCACCAtata                                                                                                                                                                                                                                 >  2:1684907/1‑288 (MQ=255)
                                                       aTGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGAATAACACATACTCTACATCATGGGTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAgcagcg                                                                                                                                                                                                                           <  2:755324/289‑1 (MQ=255)
                                                                gCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGAATAACACATACTCTACATCATGGGTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACAct                                                                                                                                                                                                                                            >  1:829092/1‑263 (MQ=255)
                                                                     tAAGTATTAACTTAATTTTTCGAGCATTAATCCAGCGCGTAATCCCAACGCTACAAACGGATTAGGGAATAACACATACTCTACATCATGGGTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCt                                                                                                                                                                                                              <  2:312007/288‑1 (MQ=255)
                                                                         gaTTGGCTTATTTTTTCAAGGTATATGCCCGACACTAATCCCAACGCTACACACAGATTAGGGAATAACACATCCTCTACATCATGGGTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAACATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAg                                                                                                                                                                                                         <  2:2165045/288‑1 (MQ=255)
                                                                          aTTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGAATAACACATACTCTACATCATGGGTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGt                                                                                                                                                                                                        <  1:2014916/289‑1 (MQ=255)
                                                                          aTTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGAATAACACATACTCTACATCATGGGTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGt                                                                                                                                                                                                        <  1:1843457/289‑1 (MQ=255)
                                                                              gCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGAATAACACATACTCTACATCATGGGTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATagcag                                                                                                                                                                                                                             >  2:1934174/1‑264 (MQ=255)
                                                                              gCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGAATAACACATACTCTACATCATGGGTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGtt                                                                                                                                                                                                       >  2:2151739/1‑286 (MQ=255)
                                                                                   ttttttCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGAATAACACATACTCTACATCATGGGTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGacac                                                                                                                                                                                                                                             >  2:1217663/1‑243 (MQ=255)
                                                                                   ttttttCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGAATAACACATACTCTACATCATGGGTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCaaa                                                                                                                                                                                               <  2:1159454/289‑1 (MQ=255)
                                                                                   ttttttCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGAATAACACATACTCTACATCATGGGTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCaa                                                                                                                                                                                                >  1:2293961/1‑288 (MQ=255)
                                                                                   ttttttCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGAATAACACATACTCTACATCATGGGTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCaa                                                                                                                                                                                                >  1:2183443/1‑288 (MQ=255)
                                                                                        tCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGAATAACACATACTCTACATCATGGGTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTgcta                                                                                                                                                                                                          <  1:1210296/273‑4 (MQ=255)
                                                                                                        cgcgTAATCCCAACGCTACCAACGGATTAGGGAATAACACATACTCTACATCATGGGTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCgcagca                                                                                                                                                                                                                      <  1:985532/245‑1 (MQ=255)
                                                                                                          cgTAATCCCAACGCTACCAACGGATTAGGGAATAACACATACTCTACATCATGGGTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCg                                                                                                                                                                                                                                                 <  1:2601435/216‑1 (MQ=255)
                                                                                                          cgTAATCCCAACGCTACCAACGGATTAGGGAATAACACATACTCTACATCATGGGTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCg                                                                                                                                                                                                                                                 >  2:2601435/1‑216 (MQ=255)
                                                                                                                         aCCAACGGATTAGGGAATAACACATACTCTACATCATGGGTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATagcag                                                                                                                                                                                                                             <  1:445784/221‑1 (MQ=255)
                                                                                                                                          tAACACATACTCTACATCATGGGTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATCCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACCCTCCCCCGATAGCAGCGCAGCAATTGCGCTGGCAGGTACTGCAAACTGCCACAGATCGTTTTCCCCAAAGGACAACGCTTCGCCAA‑TTCCACGCATACAg                                                                                                                                       >  2:392651/1‑289 (MQ=255)
                                                                                                                                           aaCACATACTCTACATCATGGGTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGa                                                                                                                                                                                                                                                      <  2:1874979/178‑1 (MQ=255)
                                                                                                                                           aaCACATACTCTACATCATGGGTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATag                                                                                                                                                                                                                                >  1:2208714/1‑200 (MQ=255)
                                                                                                                                           aaCACATACTCTACATCATGGGTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCa                                                                                                                                                <  1:1029236/280‑1 (MQ=255)
                                                                                                                                            acacATACTCTACATCATGGGTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCA‑GCGTACAGGc                                                                                                                                     <  1:1810895/289‑1 (MQ=255)
                                                                                                                                                  aCTCTACATCATGGGTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAg                                                                                                                                                                                                         >  2:232084/1‑216 (MQ=255)
                                                                                                                                                  aCTCTACATCATGGGTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCA‑GCGTACAGGCCAgcgc                                                                                                                               >  1:2257497/1‑289 (MQ=255)
                                                                                                                                                  aCTCTACATCATGGGTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCA‑GCGTACAGGCCAgcgc                                                                                                                               >  1:287459/1‑289 (MQ=255)
                                                                                                                                                     ctACATCATGGGTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCTCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCA‑GCGTACAGGCCAGCGCGcc                                                                                                                            >  1:2445866/1‑289 (MQ=255)
                                                                                                                                                      tACATCATGGGTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAAAACGTTTGGCCCCAAGGGCAACGCTTTGCCAACTTCCA‑GCGTACCGGCCAGCGCGCCa                                                                                                                           >  2:1819048/1‑289 (MQ=255)
                                                                                                                                                        catcatGGGTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGc                                                                                                                                                                            <  2:1403652/239‑1 (MQ=255)
                                                                                                                                                        catcatGGGTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCA‑GCGTACAGGCCAGCGCGCCaaa                                                                                                                         >  1:246605/1‑289 (MQ=255)
                                                                                                                                                           catGGGTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACg                                                                                                                                                                                                                                                       <  1:2102998/161‑1 (MQ=255)
                                                                                                                                                             tGGGTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACActct                                                                                                                                                                                                                                          <  1:1786475/172‑1 (MQ=255)
                                                                                                                                                             tGGGTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACActct                                                                                                                                                                                                                                          >  2:1786475/1‑172 (MQ=255)
                                                                                                                                                             tGGGTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCA‑GCGTACAGGCCAGCGCGCCAAAATg                                                                                                                      >  1:2323468/1‑287 (MQ=255)
                                                                                                                                                             tGGGTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCA‑GCGTACAGGCCAGCGCGCCAAAATg                                                                                                                      >  1:1997519/1‑287 (MQ=255)
                                                                                                                                                             tGGGTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCA‑GCGTACAGGCCAGCGCGCCAAAATGTc                                                                                                                    <  1:2055159/289‑1 (MQ=255)
                                                                                                                                                              gggTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGgt                                                                                                                                                                                                                                                                >  1:1197804/1‑149 (MQ=255)
                                                                                                                                                              gggTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGgt                                                                                                                                                                                                                                                                <  2:1197804/149‑1 (MQ=255)
                                                                                                                                                              gggTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCCGTTACTGCAAACTGGCCAAGATCTTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCA‑GCGTACCGGCCAGCGCGCCAAACTg                                                                                                                      >  2:2493648/1‑286 (MQ=255)
                                                                                                                                                              gggTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCa                                                                                                                                                                         >  2:2283599/1‑236 (MQ=255)
                                                                                                                                                              gggTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCtt                                                                                                                                                            <  1:1709875/249‑1 (MQ=255)
                                                                                                                                                                gTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGAACGTTTTGCCCAAAGGGCAACGCTTGTCCAAGTTCCA‑GCGTACAGGCACGCGCTCCAAAATGTCTg                                                                                                                  >  2:1521892/1‑288 (MQ=255)
                                                                                                                                                                gTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGCCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTATCACGATACCCACACTCACACCAGATAGCAGCGCAGCAAGTGCTCTGGCAGTTACTCCGAACTGGCGAAGATCGTTTTTCCCAAAGGGCAACCATTTGCCAAATTCCA‑GTGTACAGGCCAGCGCGCCCAAATGTCTg                                                                                                                  >  2:1624414/1‑288 (MQ=255)
                                                                                                                                                                 ttACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCA‑GCGTACAGGCCAGCGCGCCAAAATGTCTgg                                                                                                                 <  1:2162194/288‑1 (MQ=255)
                                                                                                                                                                  tACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCa                                                                                                                                                                         >  2:2001384/1‑232 (MQ=255)
                                                                                                                                                                  tACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCA‑GCGTACAGGCCAGCGCGCCAAAATGTCTGgc                                                                                                                >  1:766369/1‑288 (MQ=255)
                                                                                                                                                                    cGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCA‑GCGTACAGGCCAGCGCGCCAAAATGTCTGgc                                                                                                                >  1:2550282/1‑286 (MQ=255)
                                                                                                                                                                        aaaaCGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCA‑GCGTACAGGCCAGCGCGCCAAAATGTCTGGCGCTGaaa                                                                                                         <  2:682452/289‑1 (MQ=255)
                                                                                                                                                                             gTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCA‑GCGTACAGGCCAGCGCGCCAAAATGTCTGGCGCTGAAATGGGt                                                                                                    <  1:2710411/289‑1 (MQ=255)
                                                                                                                                                                               tCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCA‑GCGTACAGGCCAGCGCGCCAAAATGTCTGGCGCTGAAATgg                                                                                                      <  1:974254/285‑1 (MQ=255)
                                                                                                                                                                               tCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCA‑GCGTACAGGCCAGCGCGCCAAAATGTCTGGCGCTGAAATGGGTaa                                                                                                  <  1:1559896/289‑1 (MQ=255)
                                                                                                                                                                                        tCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCA‑GCGTACAGGCCAGCGCGCCAAAATGTCTGGCGCt                                                                                                             <  2:2719083/269‑1 (MQ=255)
                                                                                                                                                                                         ccTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCA‑GCGTACAGGCCAGCGCGCCAAAATGTCTGGCGCTGAAATGGGTAAACGTaccacc                                                                                        <  1:2151739/289‑1 (MQ=255)
                                                                                                                                                                                         ccTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCA‑GCGTACAGGCCAGCGCGCCAAAATGTCTGGCGCTGAAATGGGTAAACGTaccacc                                                                                        <  1:1428788/289‑1 (MQ=255)
                                                                                                                                                                                             cgcCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCA‑GCGTACAGGCCAGCGCGCCAAAATGTCTGGCGCTGAAATGGGTAAACGTACCACCAGGt                                                                                    >  1:1616463/1‑289 (MQ=255)
                                                                                                                                                                                             cgcCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCA‑GCGTACAGGCCAGCGCGCCAAAATGTCTGGCGCTGAAATGGGTAAACGTACCACCAGGt                                                                                    >  1:867298/1‑289 (MQ=255)
                                                                                                                                                                                             cgcCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCA‑GCGTACAGGCCAGCGCGCCAAAATGTCTGGCGCTGAAATGGGTAAACGTACCACCAGGt                                                                                    >  1:521192/1‑289 (MQ=255)
                                                                                                                                                                                                  gCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCA‑GCGTACAGGCAAGCGCGCCAAAATGTCTGGCGCGGAAATGGGTAAACGTACCACCAGGTTACTg                                                                               >  1:66441/1‑289 (MQ=255)
                                                                                                                                                                                                              cttcAAAGGGCCTAAAATTCAGCGTGGCACTGGCCATATGCATTTGGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCA‑GCGTACAGGCCAGCGCGCCAAAATGTCTGGCGCTGAAATGGGTAAACGTACCACCAGGTTCCTGATGGAACACCAg                                                                   <  2:1704601/287‑1 (MQ=255)
                                                                                                                                                                                                                        cATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACActct                                                                                                                                                                                                                                          <  2:2622882/113‑1 (MQ=255)
                                                                                                                                                                                                                        cATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGtt                                                                                                                                                                                >  2:1086270/1‑171 (MQ=255)
                                                                                                                                                                                                                        cATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCA‑GCGTACAGGCCAGCGCGCCAAAATGTCTGGCGCTGAAATGGGTAAACGTACCACCAGGTTCCTGATGGAACACCAGCGCCTCCAg                                                          >  1:1382494/1‑288 (MQ=255)
                                                                                                                                                                                                                                  aGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCt                                                                                                                                                                                                              <  2:2262879/131‑1 (MQ=255)
                                                                                                                                                                                                                                     gtgtCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCA‑GCGTACAGGCCAGCGCGCCAAAATGTCTGGCGCTGAAATGGGTAAACGTACCACCAGGTTCCTGATGGAACACCAGCGCCTCCAGCCCCGCCGCAccc                                             >  1:1477336/1‑288 (MQ=255)
                                                                                                                                                                                                                                       gtCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCA‑GCGTACAGGCCAGCGCGCCAAAATGTCTGGCGCTGAAATGGGTAAACGTACCACCAGGTTCCTGATGGAACACCAGCGCCTCCAGCCCCGCCGCAcccct                                           >  1:1103055/1‑286 (MQ=255)
                                                                                                                                                                                                                                       gtCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCA‑GCGTACAGGCCAGCGCGCCAAAATGTCTGGCGCTGAAATGGGTAAACGTACCACCAGGTTCCTGATGGAACACCAGCGCCTCCAGCCCCGCCGCACCCAg                                           >  1:556800/1‑288 (MQ=255)
                                                                                                                                                                                                                                                cATTTGCATTGCGAGGGAGGGCGGGGGGCGAGTAAGTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCAAAAGGGCAACGCTTTGCCAAGTTCCA‑GCGTACAGGCCAGCGCGCCAAAATGTCTGGCGCTGAAATGGGTAAACGTACCACCAGGTTCCTGATGGAACACCAGCGCCTCCAGCCCCGCCGCACCCAGCCACGTCAGa                                 <  2:1577497/289‑1 (MQ=255)
                                                                                                                                                                                                                                                cATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCA‑GCGTACAGGCCAGCGCGCCAAAATGTCTGGCGCTGAAATGGGTAAACGTACCACCAGGTTCCTGATGGAACACCAGCGCCTCCAGCCCCGCCGCACCCAGCCACGTCAGa                                 <  2:2115690/289‑1 (MQ=255)
                                                                                                                                                                                                                                                      cATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCA‑GCGTACAGGCCAGCGCGCCAAAATGTCTGGCGCTGAAATGGGTAAACGTACCACCAGGTTCCTGa                                                                              <  1:2616349/238‑1 (MQ=255)
                                                                                                                                                                                                                                                       aTTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCA‑GCGTACAGGCCAGCGCGCCAAAATGTCTGGCGCTGAAATGGGTAAACGTACCACCAGGTTCCTGATGGAACACCAGCGCCTCCAGCCCCGCCGCACCCAGCCACGTCAGAAATTtc                           <  1:1263851/288‑1 (MQ=255)
                                                                                                                                                                                                                                                         ttCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCA‑GCGTACAGGCCAGCGCGCCAAAATGTCTGGCGCTGAAATGGGTAAACGTACCACCAGGTTCCTGATGGAACACCAGCGCCTCCAGCCCCGCCGCACCCAGCCACGTCAGAAATTtct                          <  1:352544/287‑1 (MQ=255)
                                                                                                                                                                                                                                                         ttCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCA‑GCGTACAGGCCAGCGCGCCAAAATGTCTGGCGCTGAAATGGGTAAACGTACCACCAGGTTCCTGATGGAACACCAGCGCCTCCAGCCCCGCCGCACCCAGCCACGTCAGAAATTTCTCg                        >  1:1934633/1‑289 (MQ=255)
                                                                                                                                                                                                                                                             aaGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCA‑GCGTACAGGCCAGCGCGCCAAAATGTCTGGCGCTGAAATGGGTAAACGTACCCCCAGGTTCCTGATGGAACACCAGCGCCTCCAGCCCCGCCGCACCCACCCACGTCAGAAAGTCCCCGTcc                     >  2:2590390/1‑288 (MQ=255)
                                                                                                                                                                                                                                                              aGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCA‑GCGTACAGGCCAGCGCGCCAAAATGTCTGGCGCTGAAATGGGt                                                                                                    <  2:2207475/208‑1 (MQ=255)
                                                                                                                                                                                                                                                              aGGACGGCGAGTGGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCA‑GCGTACAGGCCAGCGCGCCAAAATGTCTGGCGCTGAAATGGGTAAACGTACCACCAGGTTCCTGATGGAACACCAGCGCCTCCAGCCCCGCCGCACCCAGCCACGTCAGAAATTTCTCGTCCCa                   >  1:1302727/1‑289 (MQ=255)
                                                                                                                                                                                                                                                              aGGACGGCGAGTGGCGAGTAATTGGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATGGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCA‑TCGTACAGGCCAGCGCGCCAAAATGTCTGGCGCTGAAATGGGTAAACGTACCACCAGGTTCCTGATGGAACACCAGCGCCTCCAGCCCCGCCGCACCCAGCCACGTCAGAAATTTCTCGTccc                    <  1:1054470/288‑1 (MQ=255)
                                                                                                                                                                                                                                                                 acggcgagtgGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCA‑GCGTACAGGCCAGCGCGCCAAAATGTCTGGCGCTGAAATGGGTAAACGTACCACCAGGTTCCTGATGGAACACCAGCGCCTCCAGCCCCGCCGCACCCAGCCACGTCAGAAATTTCTCGTCCCAgg                 <  2:1302727/281‑1 (MQ=255)
                                                                                                                                                                                                                                                                     cgagtgGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCA‑GCGTACAGGCCAGCGCGCCAAAATGTCTGGCGCTGaa                                                                                                          >  2:616111/4‑195 (MQ=255)
                                                                                                                                                                                                                                                                     cgagtgGCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCA‑GCGTACAGGCCAGCGCCCCAAAATGTCTGGCGCTCAAATGGGTAAACGTACCACCAGGTTCCTGATGGAACACCAGCGCCTCCAGCCCCGCCGCACCCAGCACCCTCACAAATTTCCCCTCCCAGGGaag             >  2:2354392/4‑287 (MQ=255)
                                                                                                                                                                                                                                                                       ggtagCGAGTAATGT‑GCGAACCACCCCGATAACGGAGAGCCGGTGTTCTCACACTACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAACGGGCAACGCTTTGCCAAGTTCCA‑GCGTACAGGCCAGCGCGCCAAAATGTCTGGCGCTGAAATGGGTAAACGTACCACCAGGTTCCTGATGGAACACCAGCGCCTCCAGCCCCGCCGCACCCAGCCACGTCAGAAATTTCTCGTCCCAGGGAATGt           <  2:877997/284‑1 (MQ=255)
                                                                                                                                                                                                                                                                          ggCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCA‑GCGTACAGGCCAGCGCGCCAAAATGTCTGGCGCTGAAATGGGTa                                                                                                   >  2:511534/1‑197 (MQ=255)
                                                                                                                                                                                                                                                                          ggCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTG‑CCAAAGGGCAACGCGTTGCCAAGTTCCA‑GCGTACAGGCCAGCGCGCCAAAATGTCTGGCGCTGAAATGGGTAAACGTACCAACAGGTTCCTGATGGAACACCAGCGCCTCCAGCCCCGCCGCACCCAGCCACGTCCGAACATTCCCGTCCCAGGGAATGTcgcct      >  2:2061824/1‑287 (MQ=255)
                                                                                                                                                                                                                                                                           gCGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCA‑GCGTACAGGCCAGCGCGCCAAAATGTCTGGCGCTGAAATGGGTAAACGTACCACCAGGTTCCTGATGGAACACCAGCGCCTCCAGCCCCGCCGCACCCAGCCACGTCAGAAATTTCTCGTCCCAGGGAATGTCGCGt      >  1:2366/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                            cGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCA‑GCGTACAGGCCAGCGCGCCAAAATGTCTGGCGCTGAAATGGGTAAACGTACCACCAGGTTCCTGATGGAACACCAGCGCCTCCAGCCCCGCCGCACCCAGCCACGTCAGAAATTTCTCGTCCCAGGGAATGTCGCGt      <  1:1684907/288‑1 (MQ=255)
                                                                                                                                                                                                                                                                            cGAGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACAGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCA‑GCGTACAGGCCAGCGCGCCAAAATGTCTGGCGCTGAAATGGGTAAACGTACCACCAGGTTCCTGATGGAGCACCAGCGCCTCCAGCCCCGCCGCACCCAGCCACGTCAGAAATTTCTCGTCCCAGGGAATGTCGCGt      <  1:1499012/288‑1 (MQ=255)
                                                                                                                                                                                                                                                                              aGTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCG‑TTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCA‑GCGTACAGGCCAGCGCGCCAAAATGTCTGGCGCTGAAATGGGTAAACGTACCACCAGGTTCCTGATGGAACACCAGCGCCTCCAGCCCCGCCGCACCCAGCCACGTCAGAAATTTCCCGTCCCAGGGAATGGcgcggttcg  >  2:46662/1‑284 (MQ=255)
                                                                                                                                                                                                                                                                               gTAATTTGCGAAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCA‑GCGTACAGGCCAGCGCGCCAAAATGTCTGGCGCTGAAATGGGTAAACGTACCACCAGGTTCCTGATGGAACACCAGCGCCTCCAGCCCCGCCGCACCCAGCCACGTCAGAAATTTCTCGTCCCAGGGAATGTCGCGTTGCg  >  1:618690/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                                       |||                                                                                                                                                                                                                                                                                        
AATAACCAGGATTAATCTGTATTAATTTATAAGAAAGCAACTTAATACCCGCAGAATGATTTCTGCGGGTAAGTATTAGCTTATTTTTTCGAGCATTAATCCCGCGCGTAATCCCAACGCTACCAACGGATTAGGGAATAACACATACTCTACATCATGGGTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGGCTGTGGCGAGTAATTTGGCTAACCA‑CCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCA‑GCGTACAGGCCAGCGCGCCAAAATGTCTGGCGCTGAAATGGGTAAACGTACCACCAGGTTCCTGATGGAACACCAGCGCCTCCAGCCCCGCCGCACCCAGCCACGTCAGAAATTTCTCGTCCCAGGGAATGTCGCGTTGCG  >  CP042583/1507872‑1508431

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A