Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A6 F210 I1 R1	4928	340.1	5480506	96.9%	5310610	252.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP042583	1,522,984	3 bp→CGA	intergenic (–/–)	– / –	–/–

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP042583	1,522,984	0	G	C	99.6%	654.6 / NA	280	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base G (1/0); new base C (158/120); total (160/120)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01
*	CP042583	1,522,985	0	C	G	99.6%	652.8 / NA	279	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base C (0/0); major base G (158/119); minor base A (0/1); total (159/120)
Fisher's exact test for biased strand distribution p-value = 4.32e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*	CP042583	1,522,986	0	T	A	100.0%	668.3 / NA	279	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base T (0/0); new base A (159/120); total (159/120)

Only 100 of 280 total aligned reads displayed.

AAGAATGTTTCCGTGTATGACGGCGGCTGGTACGAATGGAGCAGCGATCCAAAAAATCCGGTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATAACATTGCAATTACTGACGCTGGAGGCTCTTCAGCGTCAGATACCCACTCCACACCCGCGTAAAGGTCGTCATCCAGCACAACGCACCGAAGATCCACGCAAA‑CCACGCAAACCATGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAAGCTCTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGAAAGCCGCCCGCGTCGGTAAGCTCTCTGCGCCGCGCCAGCGCACCGTCCAGACCATCAAGCAGCCTGTTCAACAAAATGACGACTAGCGC  >  CP042583/1522697‑1523265

|||

               gaTGACGGCGGCTGGGACGAATGGAGCAGCGATCCAAAACATCCGGTAGCCACCGGTGAACGCGGCCCGGACAGTAGCAAATAACATTGCAATTACTGACGCTGGAGCGACTTCAGCGTCAGATACCCACTCCACACCCGCGTAAAGGTCGTCATCCAGCACAACGCACCGAAGATCCACGCAAA‑CCACGCAAACCATGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATaa                                                                                                                                                                                                                                                                            <  2:2500716/287‑1 (MQ=255)

                aTGACGGCGGCTGGTACGAATGGAGCAGCGATCCAAAAAATCCGGTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATAACATTGCAATTACTGACGCTGGAGCGACTTCAGCGTCAGATACCCACTCCACACCCGCGTAAAGGTCGTCATCCAGCACAACGCACCGAAGATCCACGCAAA‑CCACGCAAACCATGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAAc                                                                                                                                                                                                                                                                           >  2:18147/1‑288 (MQ=255)

                       cggcTGGTACGAATGGAGCAGCGATCCAAAAAATCCGGTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATAACATTGCAATTACTGACGCTGGAGCGACTTCAGCGTCAGATACCCACTCCACACCCGCGTAAAGGTCGTCATCCAGCACAACGCACCGAAGATCCACGCAAA‑CCACGCAAACCATGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTa                                                                                                                                                                                                                                                                   >  1:2157157/1‑289 (MQ=255)

                       cggcTGGTACGAATGGAGCAGCGATCCAAAAAATCCGGTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATAACATTGCAATTACTGACGCTGGAGCGACTTCAGCGTCAGATACCCACTCCACACCCGCGTAAAGGTCGTCATCCAGCACAACGCACCGAAGATCCACGCAAA‑CCACGCAAACCATGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCACCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTa                                                                                                                                                                                                                                                                   >  1:1126392/1‑289 (MQ=255)

                        ggcTGGTACGAATGGAGCAGCGATCCAAAAAATCCGGTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATAACATTGCAATTACTGACGCTGGAGCGACTTCAGCGTCAGATACCCACTCCACACCCGCGTAAAGGTCGTCATCCAGCACAACGCACCGAAGATCCACGCAAA‑CCACGCAAACCATGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTa                                                                                                                                                                                                                                                                   <  2:804139/288‑1 (MQ=255)

                        ggcTGGTACGAATGGAGCAGAGATCCCAAAAATCCGGTAGCAACCGGTGAACGCGGCACGGACAGTAGCAAATAACATTGCAATTACTGACGCTGGAGCGACTTCAGCGTCAGATACCCACTCCACACCCGCGTAAAGGTCGTCATCCAGCACAACGCACCGAAGATCCACGCAAA‑CCACGCAAACCATGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTa                                                                                                                                                                                                                                                                   <  1:782500/288‑1 (MQ=255)

                         gcTGGTACGAATGGAGCAGCGATCCAAAAAATCCGGTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATAACATTGCAATTACTGACGCTGGAGCGACTTCAGCGTCAGATACCCACTCCACACCCGCGTAAAGGTCGTCATCCAGCACAACGCACCGAAGATCCACGCAAA‑CCACGCAAACCATGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTAtgtg                                                                                                                                                                                                                                                                                 <  1:659786/273‑1 (MQ=255)

                                       agcagcGATCCAAAAAATCCGGTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATAACATTGCAATTACTGACGCTGGAGCGACTTCAGCGTCAGATACCCACTCCACACCCGCGTAAAGGTCGTCATCCAGCACAACGCACCGAAGATCCACGCAAA‑CCACGCAAACCATGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTACAACGACTTATGTGCATAACCGGGGTTACCAATCTGATGtttt                                                                                                                                                                                                                                                    >  2:1750038/1‑288 (MQ=255)

                                             gATCCAAAAAATCCGGTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATAACATTGCAATTACTGACGCTGGAGCGACTTCAGCGTCAGATACCCACGCCACACCCGCGTAAAGGTCGTCATCCAGCACAACGCACCGAAGATCCACGCAAA‑CCACGCAAACCATGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTtgctgc                                                                                                                                                                                                                                               <  1:730001/287‑1 (MQ=255)

                                                 cAAAAAATCCGGTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATAACATTGCAATTACTGACGCTGGAGCGACTTCAGCGTCAGATACCCACTCCACACCCGCGTAAAGGTCGTCATCCAGCACAACGCACCGAAGATCCACGCAAA‑CCACGCAAACCATGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAg                                                                                                                                                                                                                                            <  1:1729630/286‑1 (MQ=255)

                                                 cAAAAAATCCGGTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATAACATTGCAATTACTGACGCTGGAGCGACTTCAGCGTCAGATACCCACTCCACACCCGCGTAAAGGTCGTCATCCAGCACAACGCACCGAAGATCCACGCAAA‑CCACGCAAACCATGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAg                                                                                                                                                                                                                                            >  2:1729630/1‑286 (MQ=255)

                                                       aTCCGGTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATAACATTGCAATTACTGACGCTGGAGCGACTTCAGCGTCAGATACCCACTCCACACCCGCGTAAAGGTCGTCATCCAGCACAACGCACCGAAGATCCACGCAAA‑CCACGCAAACCATGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCaaa                                                                                                                                                                                                                                   <  1:276070/289‑1 (MQ=255)

                                                             tAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATAACATTGCAATTACTGACGCTGGAGCGACTTCAGCGTCAGATACCCACTCCACACCCGCGTAAAGGTCGTCATCCAGCACAACGCACCGAAGATCCACGCAAA‑CCACGCAAACCATGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCga                                                                                                                                                                                                                              <  1:1462027/288‑1 (MQ=255)

                                                                 aaCCGGTGAACGCGGCCCGGACAGTAGCAAATAACATTGCAATTACTGACGCTGGAGCGACTTCAGCGTCAGATACCCACTCCACACCCGCGTAAAGGTCGTCATCCAGCACAACGCACCGAAGATCCACGCAAA‑CCACGCAAACCATGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGaa                                                                                                                                                                                                                           <  2:1543184/287‑1 (MQ=255)

                                                                  aCCGGTGAACGCGGCCCGGACAGTAGCAAATAACATTGCAATTACTGACGCTGGAGCGACTTCAGCGTCAGATACCCACTCCACCCCCGAGTAAAGGACGTCATCCAGCACAACCCACCGAAGATCCACGCAAA‑CCACGCAAACCATGCAGTGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCCTCGGTTAATCCCCCCAGATAGTAAAACGACTTATTGGTATAACCGGGTATATCAATCTGATGTTTTGCTGCGAGTGTGCCAAAGGCGGGaacat                                                                                                                                                                                                                        >  2:1351041/1‑286 (MQ=255)

                                                                              ggCCCGGACAGTAGCAAATAACATTGCAATTACTGACGCTGGAGCGACTTCAGCGTCAGATACCCACTCCACACCCGCGTAAAGGTCGTCATCCAGCACAACGCACCGAAGATCCACGCAAA‑CCACGCAAACCATGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTg                                                                                                                                                                                                             <  1:2042572/288‑1 (MQ=255)

                                                                                     aCAGTAGCAAATATCATTGAAATTACTGACGCTGGGGCGACTTCAGCGTAAGATACCCACGCCACACCCGCGTAAAGGTCGTCATCCAGCACAACGCACCGAAGATCCACGCAAA‑CGACGCAAACCATGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATaa                                                                                                                                                                                                      <  2:2353048/288‑1 (MQ=255)

                                                                                        gTAGCAAATAACATTGCAATTACTGACGCTGGAGCGACTTCAGCGTCAGATACCCACTCCACACCCGCGTAAAGGTCGTCATCCAGCACAACGCACCGAAGATCCACGCAAA‑CCACGCAAACCATGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGc                                                                                                                                                                                                  >  1:1995260/1‑289 (MQ=255)

                                                                                          aGCAAATAACATTGCAATTACTGACGCTGGAGCGACTTCAGCGTCAGATACCCACTCCACACCCGCGTAAAGGTCGTCATCCAGCACAACGCACCGAAGATCCACGCAAA‑CCACGCAAACCATGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTtgctgc                                                                                                                                                                                                                                               >  2:1132639/1‑242 (MQ=255)

                                                                                              aaTAACATTGCAATTACTGACGCTGGAGCGACTTCAGCGTCAGATACCCACTCCACACCCGCGTAAAGGTCGTCATCCAGCACAACGCACCGAAGATCCACGCAAA‑CCACGCAAACCATGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAaaca                                                                                                                                                                                             >  1:1166324/1‑288 (MQ=255)

                                                                                                   cATTGCAATTACTGACGCTGGAGCGACTTCAGCGTCAGATACCCACTCCACACCCGCGTAAAGGTCGTCATCCAGCACAACGCACCGAAGATCCACGCAAA‑CCACGCAAACCATGCAGGGAATAAACATCCCATCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAaacaac                                                                                                                                                                                           <  2:450764/285‑1 (MQ=255)

                                                                                                   cATTGCAATTACTGACGCTGGAGCGACTTCAGCGTCAGATACCCACTCCACACCCGCGTAAAGGTCGTCATCCAGCACAACGCACCGAAGATCCACGCAAA‑CCACGCAAACCATGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCACTCTGATGTTTTGCTGCCAGTGCAGCAACGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAAcc                                                                                                                                                                                       >  2:876902/1‑289 (MQ=255)

                                                                                                   cATTGCAATTACTGACGCTGGAGCGACTTCAGCGTCAGATACCCACTCCACACCCGCGTAAAGGTCGTCATCCAGCACAACGCACCGAAGATCCACGCAAA‑CCACGCAAACCATGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTtgctgc                                                                                                                                                                                                                                               <  2:2311816/233‑1 (MQ=255)

                                                                                                      tGCAATTACTGACGCTGGAGCGACTTCAGCGTCAGATACCCACTCCACACCCGCGTAAAGGTCGTCATCCAGCACAACGCACCGAAGATCCACGCAAA‑CCACGCAAACCATGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCgg                                                                                                                                                                                                                                                                        <  2:90492/205‑1 (MQ=255)

                                                                                                         ggtatcTGACGCTGGAGCGACTTCAGCGTCAGATACCC‑CTCCACACCCGCGTAAAGGTCGTCATCCAGCACAACGCACCGAAGATCCACGCAAA‑CCACGCAAACCATGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGc                                                                                                                                                                                                  >  2:831540/6‑271 (MQ=255)

                                                                                                              cTGACGCTGGAGCGACTTCAGCGTCAGATACCCACTCCACACCCGCGTAAAGGCCGTCATCCACCACAACGCACCGAAGATCCACGCAAA‑CCACCCAAACCATGCAGGGAATAAACATCCCAGCACAAACAGTAAAATC‑GTTTCTTTGCCTCCGGTTAATCCCCCCAGAAAGTAAAACGACTTATTTGCATAACCGGGGTTATCAACCTGATGTTTTCCTTCAAGTGCAGCAAAGGCGAAAAAACTGCTGCCCGGCCCGATCAACGCAAACAACAACCAaccgcacgcc                                                                                                                                                                            >  2:2083896/1‑284 (MQ=255)

                                                                                                                gACGCTGGAGCGACTTCAGCGTCAGATACCCACTCCACACCCGCGTAAAGGTCGTCATCCAGCACAACGCACCGAAGATCCACGCAAA‑CCACGCAAACCATGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATa                                                                                                                                                                                                       >  1:1202694/1‑260 (MQ=255)

                                                                                                                               tCAGCCTAAGACACCCCCTCCACACCCGCGTAAAGGTCGTCATCCAGCACAACGCACCGAAGATCCACGCAAA‑CCACGCAAACCATGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCgg                                                                                                                                                           <  2:2303523/289‑1 (MQ=255)

                                                                                                                                cAGCGTCAGATACCCACTCCACACCCGCGTAAAGGTCGTCATCCAGCACAACGCACCGAAGATCCACGCAAA‑CCACGCAAACCATGCAGGGAATAAACATCCCAGCACAAACAGTAAGCTC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGt                                                                                                                                                          <  1:1430698/289‑1 (MQ=255)

                                                                                                                                       aGATACCCACTCCACACCCGCGTAAAGGTCGTCATCCAGCACAACGCACCGAAGATCCACGCAAA‑CCACGCAAACCATGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAACACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTgcagcca                                                                                                                                                   >  2:1043983/1‑287 (MQ=255)

                                                                                                                                       aGATACCCACTCCACACCCGCGTAAAGGTCGTCATCCAGCACAACGCACCGAAGATCCACGCAAA‑CCACGCAAACCATGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACtgctgc                                                                                                                                                                                                                  >  2:493462/1‑226 (MQ=255)

                                                                                                                                                   cacaCCCGCGTAAAGGTCGTCATCCAGCACAACGCACCGAAGATCCACGCAAA‑CCACGCAAACCATGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAACCaa                                                                                                                                       >  2:2553771/1‑289 (MQ=255)

                                                                                                                                                    acacCCGCGTAAAGGTCGTCATCCAGCACAACGCACCGAAGATCCGCGCAAA‑CCACGCAAACCATGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCaaa                                                                                                                                      <  1:2093954/289‑1 (MQ=255)

                                                                                                                                                     cacCCGCGTAAAGGTCGTCATCCAGCACAACGCACCGAAGATCCACGCAAA‑CCACGCAAACCATGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTgcagca                                                                                                                                                                                                                                     <  1:439671/193‑1 (MQ=255)

                                                                                                                                                     cacCCGCGTAAAGGTCGTCATCCAGCACAACGCACCGAAGATCCACGCAAA‑CCACGCAAACCATGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAgccg                                                                                                                                                                                  >  1:1152541/1‑244 (MQ=255)

                                                                                                                                                     cacCCGCGTAAAGGTCGTCATCCAGCACAACGCACCGAAGATCCACGCAAA‑CCACGCAAACCATGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGAAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCCCCGGTGCAGCAAAAATAAAGCCaaa                                                                                                                                      >  2:2133907/1‑288 (MQ=255)

                                                                                                                                                        ccGCGTAAAGGTCGTCATCCAGCACAACGCACCGAAGATCCACGCAAA‑CCACGCAAACCATGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACg                                                                                                                                                                                                   <  1:887671/224‑1 (MQ=255)

                                                                                                                                                          gcgTAAAGGTCGTCATCCAGCACAACGCACCGAAGATCCACGCAAA‑CCACGCAAACCATGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCAc                                                                                                                                <  1:1112387/289‑1 (MQ=255)

                                                                                                                                                           cgTAAAGGTCGTCATCCAGCACAACGCACCGAAGATCCACGCAAA‑CCACGCAAACCATGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTtgctgc                                                                                                                                                                                                                                               <  2:1225002/177‑1 (MQ=255)

                                                                                                                                                           cgTAAAGGTCGTCATCCAGCACAACGCACCGAAGATCCACGCAAA‑CCACGCAAACCATGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCaaa                                                                                                                                                                                                                                   <  2:220274/189‑1 (MQ=255)

                                                                                                                                                           cgTAAAGGTCGTCATCCAGCACAACGCACCGAAGATCCACGCAAA‑CCACGCAAACCATGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCAc                                                                                                                                <  2:1654843/288‑1 (MQ=255)

                                                                                                                                                           cgTAAAGGTCGTCATCCAGCACAACGCACCGAAGATCCACGCAAA‑CCACGCAAACCATGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCAc                                                                                                                                >  1:1654843/1‑288 (MQ=255)

                                                                                                                                                           cgTAAAGGTCGTCATCCAGCACAACGCACCGAAGATCCACGCAAA‑CCACGCAAACCATGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGGTCAGCAAGAAAAAAACCAAAACGCAcc                                                                                                                               >  2:1112387/1‑289 (MQ=255)

                                                                                                                                                                  gtcgtcATCCAGCACAACGCACCGAAGATCCACGCAAA‑CCACGCAAACCATGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGcgcga                                                                                                                        >  2:2365191/1‑288 (MQ=255)

                                                                                                                                                                     gtcATCCAGCACAACGCACCGAAGATCCACGCAAA‑CCACGCAAACCATGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTg                                                                                                                                                                              <  1:220524/232‑1 (MQ=255)

                                                                                                                                                                     gtcATCCAGCACAACGCACCGAAGATCCACGCAAA‑CCACGCAAACCATGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTaaa                                                                                                                     >  2:2012992/1‑289 (MQ=255)

                                                                                                                                                                             gCACAACGCACCGAAGATCCACGCAAA‑CCACGCAAACCATGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAg                                                                                                                                                                                                                                            >  2:1163131/1‑162 (MQ=255)

                                                                                                                                                                                   cGCACCGAAGATCCACGCAAA‑CCACGCAAACCATGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCa                                                                                                                                                                                                                                                                <  2:1945062/136‑1 (MQ=255)

                                                                                                                                                                                   cGCACCGAAGATCCACGCAAA‑CCACGCAAACCATGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTcc                                                                                                                                                             >  1:1356560/1‑235 (MQ=255)

                                                                                                                                                                                   cGCACCGAAGATCCACGCAAA‑CCACGCAAACCATGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCgaga                                                                                                       >  1:531120/1‑289 (MQ=255)

                                                                                                                                                                                   cGCACCGAAGATCCACGCAAA‑CCACGCAAACCATGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCgaga                                                                                                       >  1:1738124/1‑289 (MQ=255)

                                                                                                                                                                                   cGCACCGAAGATCCACGCAAA‑CCACGCAAACCATGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAAACgaga                                                                                                       >  1:356044/1‑289 (MQ=255)

                                                                                                                                                                                        ccaaGATCCCCCCAAACCCCCACAAACATGGCAGGAAAAAACCACCCCAGCA‑AAACAGGTAGGTCGGTTTCTGGGCATTGGTTTAATCCCCCCGGATGGTAAAACGACTTGTGTGAATAACCGGGGTTATCAATCTGAGGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACGGCTGCCCGTGCCGATAACCGCAAAAAACACCCAGCCGCCGGCAGGCGCATTTTGCCCCGGTGCGGC‑AGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAat                                                                                                  <  2:369258/287‑1 (MQ=255)

                                                                                                                                                                                        cGAAGATCCACGCAAA‑CCACGCAAACCATGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAat                                                                                                  >  1:981247/1‑289 (MQ=255)

                                                                                                                                                                                             aTCCACGCAAA‑CCACGCAAACCATGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATa                                                                                                                                                                                                       <  2:332226/183‑1 (MQ=255)

                                                                                                                                                                                             aTCCACGCAAA‑CCACGCAAACCATGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATa                                                                                                                                              <  1:333668/240‑1 (MQ=255)

                                                                                                                                                                                             aTCCACGCAAA‑CCACGCAAACCATGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATCTTGCTCCGGGTCAGCCAGAATAACGACAAACGGCAACAGCGAGTAAAAGAGAAACACGAGAGAAATATCaa                                                                                             >  2:2383372/1‑289 (MQ=255)

                                                                                                                                                                                                cacgcaaa‑ccacgcaaacCATGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTc                                                                                                                                                              <  1:2583693/221‑1 (MQ=255)

                                                                                                                                                                                                cacgcaaa‑ccacgcaaacCATGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAACATCAAGaa                                                                                          >  1:840752/1‑289 (MQ=255)

                                                                                                                                                                                                cacgcaaa‑ccacgcaaacCATGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTCTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGaa                                                                                          >  1:249828/1‑289 (MQ=255)

                                                                                                                                                                                                  cgcaaa‑ccacgcaaaccaTGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGaaa                                                                                         >  1:1009036/1‑288 (MQ=255)

                                                                                                                                                                                                            cgcaaaccaTGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAAcc                                                                                                                                                                                       >  1:903110/1‑185 (MQ=255)

                                                                                                                                                                                                                  ccaTGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTg                                                                                                                                                                              <  2:2038204/188‑1 (MQ=255)

                                                                                                                                                                                                                    aTGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCt                                                                                                                                                               <  2:1372052/201‑1 (MQ=255)

                                                                                                                                                                                                                      gCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAACGCGTAAAAGAGAAAATCGAGAAAAATATCAAGAAAGCCGCCCGCGTCGGTAAGc                                                                      >  2:2340596/1‑288 (MQ=255)

                                                                                                                                                                                                                             aTAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGAAAGCCGCCCGCGTCGGTAAGCTCTCTgc                                                               >  1:1241837/1‑288 (MQ=255)

                                                                                                                                                                                                                                    tCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGAAAGCCGCCCGCGTCGGTAAGCTCTCTgcgccgcgcc                                                       >  1:2640397/1‑289 (MQ=255)

                                                                                                                                                                                                                                    tCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGAAAGCCGCCCGCGTCGGTAAGCTCTCTgcgccgcgc                                                        >  2:428785/1‑288 (MQ=255)

                                                                                                                                                                                                                                     cccAGCACAAACAGTACGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAACCGACTTATGTTCATAACCGGGGTTATCAATCTATTGTTTTGCTGCCAGTGCAGCAAAGGCGATAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCTCGTAAAAGAGAAAATCGAGAGAAATATCAAGAAAGCCGCCCGCGTCGGTAAGCTCTCTGCGCCGCGCCa                                                      <  1:2383372/289‑1 (MQ=255)

                                                                                                                                                                                                                                     cccAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGAAAGCCGCCCGCGTCGGTAAGCTCTCTGCGCCGCGCCa                                                      >  2:2176126/1‑289 (MQ=255)

                                                                                                                                                                                                                                        aGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGAAAGCCGCCCGCGTCGGTAAGAGACCTGCGCCGCGCCAgc                                                    >  2:1973007/1‑288 (MQ=255)

                                                                                                                                                                                                                                          cacaAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGAAAGCCGCCCGCGTCGGTAAGCTCTCTGCGCCGCGCCAgcgc                                                  >  1:2126719/1‑288 (MQ=255)

                                                                                                                                                                                                                                          cacaAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGAAAGCCGCCCGCGTCGGTAAGCTCTCCGCGCCGCGCCAGCGCa                                                 <  2:1009036/289‑1 (MQ=255)

                                                                                                                                                                                                                                           acaAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGAAAGCCGCCCGCGTCGGTAAGCTCTCTGCGCCGCGCCAGCGCa                                                 <  1:370248/288‑1 (MQ=255)

                                                                                                                                                                                                                                           acaAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGAAAGCCGCCCGCGTCGGTAAGCTCTCTGCGCCGCGCCAGCGCa                                                 <  1:1867947/288‑1 (MQ=255)

                                                                                                                                                                                                                                           acaAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGAAAGCCGCCCGCGTCGGTAAGCTCTCTGCGCCGCGCCAGCGCa                                                 <  1:1790041/288‑1 (MQ=255)

                                                                                                                                                                                                                                           acaAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGAAAGCCGCCCGCGTCGGTAAGCTCTCTGCGCCGCGCCAGCGCa                                                 <  2:682200/288‑1 (MQ=255)

                                                                                                                                                                                                                                                    aaGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAg                                                                                                                                                                                                                                            <  1:1938002/92‑1 (MQ=255)

                                                                                                                                                                                                                                                    aaGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGAAAGCCGCCCGCGTCGGTAAGCTCTCTGCGCCGCGCCAGCGCACCGTCCa                                          <  1:2012992/286‑1 (MQ=255)

                                                                                                                                                                                                                                                    aaGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGAAAGCCGCCCGCGTCGGTAAGCTCTCTGCGCCGCGCCAGCGCACCGTCCAGa                                        <  1:468606/288‑1 (MQ=255)

                                                                                                                                                                                                                                                            tttCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTc                                                                                                                                                              >  2:571661/1‑163 (MQ=255)

                                                                                                                                                                                                                                                            tttCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGAAAGCCGCCCGCGTCGGTAAGCTCTCTGCGCCGCGCCAGCGCa                                                 >  2:759620/1‑272 (MQ=255)

                                                                                                                                                                                                                                                            tttCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGAAAGCCGCCCGCGTCGGTAAGCTCTCTGCGCCGCGCCAGCGCa                                                 <  2:2680864/272‑1 (MQ=255)

                                                                                                                                                                                                                                                            tttCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGAAAGCCGCCCGCGTCGGTAAGCTCTCTGCGCCGCGCCAGCGCACCGTCCa                                          <  1:2693465/279‑1 (MQ=255)

                                                                                                                                                                                                                                                            tttCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGAAAGCCGCCCGCGTCGGTAAGCTCTCTGCGCCGCGCCAGCGCACCGTCCAGACCATCaa                                 >  1:2324507/1‑288 (MQ=255)

                                                                                                                                                                                                                                                                tgtgCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGAAAGCCGCCCGCGTCGGTAAGCTCTCTGCGCCGCGCCAGCGCACCGTCCAGACCATCAagcagc                            <  1:1961462/289‑1 (MQ=255)

                                                                                                                                                                                                                                                                  tgCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGAAAGCCGCCCGCGTCGGTAAGCTCTCTGCGCCGCGCCAGCGCACCGTCCAGACCATCAagcag                             >  1:822842/1‑286 (MQ=255)

                                                                                                                                                                                                                                                                       tCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAGCTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGAAAGCCGCCCGCGTCGGTAAGCTCTCTGCGCCGCGCCAGCGCACCGTCCAGACCATCAAGCAGCCTGTTca                     >  2:1582205/1‑289 (MQ=255)

                                                                                                                                                                                                                                                                       tCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGAAAGCCGCCCGCGTCGGTAAGCTCTCTGCGCCGCGCCAGCGCACCGTCCa                                          >  2:1192003/1‑268 (MQ=255)

                                                                                                                                                                                                                                                                         ggTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGAAAGccgcccg                                                                                 >  1:2346291/1‑227 (MQ=255)

                                                                                                                                                                                                                                                                              aTCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGAAAGCCGCCCGCGTCGGTAAGCTCTCTGCGCCGCGCCAGCGCACCGTCCAGACCATCAAGCAGCCTGTTCAACAAAAt              >  1:874226/1‑289 (MQ=255)

                                                                                                                                                                                                                                                                              aTCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGAAAGCCGCCCGCGTCGGTAAGCTCTCTGCGCCGCGCCAGCGCACCGTCCAGACCATCAAGCAGCCTGTTCAACAAAAt              >  1:2717815/1‑289 (MQ=255)

                                                                                                                                                                                                                                                                                   cccAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGAAAGCCGCCCGCGTCGGTAAGCTCTCTGCGCCGCGCCAGCGCACCGTCCAGACCATCAAGCAGCCTGTTCAACAAAATgacg          >  2:1277641/1‑288 (MQ=255)

                                                                                                                                                                                                                                                                                    ccAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGt                                                                                                                                                          <  1:2176315/143‑1 (MQ=255)

                                                                                                                                                                                                                                                                                    ccAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGAAAGCCGCCCGCGTCGGTAAGCTCTCTGCGCCGCGCCAGCGCACCGTCCAGACCATCAagcagc                            <  2:2418909/269‑1 (MQ=255)

                                                                                                                                                                                                                                                                                    ccAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGAAAGCCGCCCGCGTCGGTAAGCTCTCTGCGCCGCGCCAGCGCACCGTCCAGACCATCAagcagc                            >  1:2418909/1‑269 (MQ=255)

                                                                                                                                                                                                                                                                                        aTAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGCGAGAAATATCAAGAAAGCCGCCCGCGTCGGTAAGCTCTCTGCGCCGCGCCAGCGCACCGTCCAGACCACCAAGCAGCCTGGTCAACAAACTGACGACTAg     >  2:314026/1‑288 (MQ=255)

                                                                                                                                                                                                                                                                                         tAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCaaa                                                                                                                                      <  1:60747/158‑1 (MQ=255)

                                                                                                                                                                                                                                                                                         tAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGAAAGCCGCCCGCGTCGGTAAGCTCTCTGCGCCGCGCCAGCGCACCGTCCAGACCATCAAGCAGCCTGTTCAACAAAATGACGACTAg     <  2:2717815/287‑1 (MQ=255)

                                                                                                                                                                                                                                                                                          aGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGAAAGCCGCCCGCGTCGGTAAGCTCTCTGCGCCGCGCCAGCGCACCGTCCAGACCATCAAGCAGCCTGTTCAACAAAATGACGACTAgcg   >  2:888039/1‑288 (MQ=255)

|||

AAGAATGTTTCCGTGTATGACGGCGGCTGGTACGAATGGAGCAGCGATCCAAAAAATCCGGTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATAACATTGCAATTACTGACGCTGGAGGCTCTTCAGCGTCAGATACCCACTCCACACCCGCGTAAAGGTCGTCATCCAGCACAACGCACCGAAGATCCACGCAAA‑CCACGCAAACCATGCAGGGAATAAACATCCCAGCACAAACAGTAAGATC‑GTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAAGCTCTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGAAAGCCGCCCGCGTCGGTAAGCTCTCTGCGCCGCGCCAGCGCACCGTCCAGACCATCAAGCAGCCTGTTCAACAAAATGACGACTAGCGC  >  CP042583/1522697‑1523265

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A